FFCP PHASE1:Mm9::chr10:12728340..12728353,+: Difference between revisions
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{{FFCP|EntrezGene=66125|HGNC=|UniProt=Q923D4|association_with_transcript=84bp_to_ENSMUST00000105139,NM_175102,uc007eki.2_5end|description=CAGE_peak_3_at_Sf3b5_5end|id=chr10:12728340..12728353,+|ontology_enrichment_celltype=CL:0000221!3.52e-14!44;CL:0000133!3.52e-14!44;CL:0002319!8.71e-14!43;CL:0000055!1.14e-12!50;CL:0000540!9.03e-12!33;CL:0000047!9.03e-12!33;CL:0000031!9.03e-12!33;CL:0000404!9.03e-12!33;CL:0000393!1.60e-11!39;CL:0000211!1.60e-11!39;CL:0000117!1.34e-10!23;CL:0000337!1.34e-10!23;CL:0000548!3.35e-09!115;CL:0000004!3.35e-09!115;CL:0000255!3.35e-09!115;CL:0000723!3.86e-09!91;CL:0000048!3.86e-09!91;CL:0000144!1.09e-08!121;CL:0000012!1.09e-08!121;CL:0000034!1.77e-08!97;CL:0002371!1.83e-08!118;CL:0002321!1.33e-07!70;CL:0000220!1.33e-07!70|ontology_enrichment_celltype_v019_2=CL:0000221,1.86e-14,44;CL:0000133,1.86e-14,44;CL:0002319,4.70e-14,43;CL:0000540,5.40e-12,33;CL:0000047,5.40e-12,33;CL:0000031,5.40e-12,33;CL:0000404,5.40e-12,33;CL:0000393,1.43e-11,39;CL:0000211,1.43e-11,39;CL:0000117,8.49e-11,23;CL:0000337,8.49e-11,23;CL:0000723,4.43e-09,91;CL:0000048,4.43e-09,91;CL:0000034,1.92e-08,97;CL:0002321,3.93e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.61e-27!73;UBERON:0005743!1.61e-27!73;UBERON:0000073!7.51e-27!75;UBERON:0001016!7.51e-27!75;UBERON:0001049!1.70e-20!52;UBERON:0005068!1.70e-20!52;UBERON:0006241!1.70e-20!52;UBERON:0007135!1.70e-20!52;UBERON:0000955!4.81e-20!50;UBERON:0006238!4.81e-20!50;UBERON:0002616!1.21e-19!49;UBERON:0004121!4.19e-18!102;UBERON:0000924!4.19e-18!102;UBERON:0006601!4.19e-18!102;UBERON:0002020!2.27e-17!34;UBERON:0003080!1.16e-16!40;UBERON:0002346!2.51e-16!71;UBERON:0003075!2.51e-16!71;UBERON:0007284!2.51e-16!71;UBERON:0002780!4.78e-16!39;UBERON:0001890!4.78e-16!39;UBERON:0006240!4.78e-16!39;UBERON:0000033!7.77e-16!63;UBERON:0002791!3.03e-15!29;UBERON:0003528!3.03e-15!29;UBERON:0001893!3.03e-15!29;UBERON:0003056!7.25e-14!49;UBERON:0007811!4.97e-12!86;UBERON:0000956!5.77e-12!21;UBERON:0001869!5.77e-12!21;UBERON:0000203!5.77e-12!21;UBERON:0000153!1.69e-11!94;UBERON:0002619!2.91e-10!17;UBERON:0002021!4.26e-08!10;UBERON:0000411!4.26e-08!10;UBERON:0001950!4.26e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.34e-28,73;UBERON:0001016,2.09e-27,75;UBERON:0000073,2.05e-22,54;UBERON:0001049,6.54e-21,52;UBERON:0005068,6.54e-21,52;UBERON:0006241,6.54e-21,52;UBERON:0007135,6.54e-21,52;UBERON:0004121,3.42e-20,95;UBERON:0000924,3.42e-20,95;UBERON:0006601,3.42e-20,95;UBERON:0002346,8.59e-19,64;UBERON:0003075,8.59e-19,64;UBERON:0007284,8.59e-19,64;UBERON:0000955,1.13e-18,47;UBERON:0006238,1.13e-18,47;UBERON:0002616,2.85e-18,46;UBERON:0002020,1.02e-17,34;UBERON:0003080,5.43e-17,40;UBERON:0002780,2.30e-16,39;UBERON:0001890,2.30e-16,39;UBERON:0006240,2.30e-16,39;UBERON:0010371,4.16e-16,73;UBERON:0003528,1.52e-15,29;UBERON:0002791,1.52e-15,29;UBERON:0001893,1.52e-15,29;UBERON:0003056,4.15e-14,49;UBERON:0000956,3.42e-12,21;UBERON:0001869,3.42e-12,21;UBERON:0000203,3.42e-12,21;UBERON:0002619,1.87e-10,17;UBERON:0010314,2.52e-10,92;UBERON:0002021,3.06e-08,10;UBERON:0000411,3.06e-08,10;UBERON:0001950,3.06e-08,10|phase1_expression=2.40223270657191,0.348975407639361,3.63999391511629,0.60492842261366,0,1.17515490338323,1.16806320297763,1.54947988129892,5.63154888606667,3.97909694747389,1.02730780935303,2.07407613387875,1.54080656938085,1.22388563386596,2.33176833270964,1.21485160433896,0.699561878128147,0.946386496074713,0.959801035240171,0.84877930359606,1.78590909317247,2.28369187762036,4.70159620450084,0.95995453676044,1.60586496747019,1.14846392823004,1.7230479846363,2.58565479223067,1.33016393619462,2.26827116783938,3.10422714917427,1.90509202037889,1.23012957516914,0,1.44425809875637,1.49611180822643,1.42918549383658,0.837063261473815,1.5626706890476,0.523523743973798,0,0.683045484958446,0,3.27331726736501,3.04130793658544,5.13930906052708,7.82391344348039,2.8343270329458,4.61340983742391,4.08302788055995,2.79972843250725,2.87505128729943,0.335565212115473,1.45072428402269,3.02484419228218,1.02903774414379,0.85960031981627,2.57836046138721,4.45096213891115,5.81890077199236,6.97214543856797,3.72728985276045,2.66788438833342,3.1496490104849,2.96659908770092,5.6838409195688,2.39680088414724,7.68436610643109,3.00699875694585,4.59020190327748,5.25812403378455,3.42781181284564,6.18431914664518,3.91970557487853,2.01275489138296,7.35375029288017,6.60695285996332,5.10749352340751,4.91540906419979,4.87979264601717,3.01909223887952,4.68822033501084,5.02529398202486,4.50210088025344,3.20876320331301,4.41942878210502,3.84403538157578,4.10078780815661,1.66597625333005,1.43585964202892,0.579728977403356,0,0,0,1.29955283489534,0.896053774194671,0.421333260395256,3.74946709671727,4.93593408745451,5.65343319216544,3.94361575374705,0,2.54805239706646,0,2.59789249213457,5.32055717497707,3.0331466700887,0.79928715803342,0,0.742210695324124,2.25530924795977,2.74018930480927,0.922461989024234,1.65794904607885,1.41106448562846,1.0053327306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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=66125 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=Q923D4 | |||
|association_with_transcript=84bp_to_ENSMUST00000105139,NM_175102,uc007eki.2_5end | |||
|cluster_id=chr10:12728340..12728353,+ | |||
|description=CAGE_peak_3_at_Sf3b5_5end | |||
|id=chr10:12728340..12728353,+ | |||
|ontology_enrichment_celltype=CL:0000221!3.52e-14!44;CL:0000133!3.52e-14!44;CL:0002319!8.71e-14!43;CL:0000055!1.14e-12!50;CL:0000540!9.03e-12!33;CL:0000047!9.03e-12!33;CL:0000031!9.03e-12!33;CL:0000404!9.03e-12!33;CL:0000393!1.60e-11!39;CL:0000211!1.60e-11!39;CL:0000117!1.34e-10!23;CL:0000337!1.34e-10!23;CL:0000548!3.35e-09!115;CL:0000004!3.35e-09!115;CL:0000255!3.35e-09!115;CL:0000723!3.86e-09!91;CL:0000048!3.86e-09!91;CL:0000144!1.09e-08!121;CL:0000012!1.09e-08!121;CL:0000034!1.77e-08!97;CL:0002371!1.83e-08!118;CL:0002321!1.33e-07!70;CL:0000220!1.33e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.86e-14,44;CL:0000133,1.86e-14,44;CL:0002319,4.70e-14,43;CL:0000540,5.40e-12,33;CL:0000047,5.40e-12,33;CL:0000031,5.40e-12,33;CL:0000404,5.40e-12,33;CL:0000393,1.43e-11,39;CL:0000211,1.43e-11,39;CL:0000117,8.49e-11,23;CL:0000337,8.49e-11,23;CL:0000723,4.43e-09,91;CL:0000048,4.43e-09,91;CL:0000034,1.92e-08,97;CL:0002321,3.93e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.61e-27!73;UBERON:0005743!1.61e-27!73;UBERON:0000073!7.51e-27!75;UBERON:0001016!7.51e-27!75;UBERON:0001049!1.70e-20!52;UBERON:0005068!1.70e-20!52;UBERON:0006241!1.70e-20!52;UBERON:0007135!1.70e-20!52;UBERON:0000955!4.81e-20!50;UBERON:0006238!4.81e-20!50;UBERON:0002616!1.21e-19!49;UBERON:0004121!4.19e-18!102;UBERON:0000924!4.19e-18!102;UBERON:0006601!4.19e-18!102;UBERON:0002020!2.27e-17!34;UBERON:0003080!1.16e-16!40;UBERON:0002346!2.51e-16!71;UBERON:0003075!2.51e-16!71;UBERON:0007284!2.51e-16!71;UBERON:0002780!4.78e-16!39;UBERON:0001890!4.78e-16!39;UBERON:0006240!4.78e-16!39;UBERON:0000033!7.77e-16!63;UBERON:0002791!3.03e-15!29;UBERON:0003528!3.03e-15!29;UBERON:0001893!3.03e-15!29;UBERON:0003056!7.25e-14!49;UBERON:0007811!4.97e-12!86;UBERON:0000956!5.77e-12!21;UBERON:0001869!5.77e-12!21;UBERON:0000203!5.77e-12!21;UBERON:0000153!1.69e-11!94;UBERON:0002619!2.91e-10!17;UBERON:0002021!4.26e-08!10;UBERON:0000411!4.26e-08!10;UBERON:0001950!4.26e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.34e-28,73;UBERON:0001016,2.09e-27,75;UBERON:0000073,2.05e-22,54;UBERON:0001049,6.54e-21,52;UBERON:0005068,6.54e-21,52;UBERON:0006241,6.54e-21,52;UBERON:0007135,6.54e-21,52;UBERON:0004121,3.42e-20,95;UBERON:0000924,3.42e-20,95;UBERON:0006601,3.42e-20,95;UBERON:0002346,8.59e-19,64;UBERON:0003075,8.59e-19,64;UBERON:0007284,8.59e-19,64;UBERON:0000955,1.13e-18,47;UBERON:0006238,1.13e-18,47;UBERON:0002616,2.85e-18,46;UBERON:0002020,1.02e-17,34;UBERON:0003080,5.43e-17,40;UBERON:0002780,2.30e-16,39;UBERON:0001890,2.30e-16,39;UBERON:0006240,2.30e-16,39;UBERON:0010371,4.16e-16,73;UBERON:0003528,1.52e-15,29;UBERON:0002791,1.52e-15,29;UBERON:0001893,1.52e-15,29;UBERON:0003056,4.15e-14,49;UBERON:0000956,3.42e-12,21;UBERON:0001869,3.42e-12,21;UBERON:0000203,3.42e-12,21;UBERON:0002619,1.87e-10,17;UBERON:0010314,2.52e-10,92;UBERON:0002021,3.06e-08,10;UBERON:0000411,3.06e-08,10;UBERON:0001950,3.06e-08,10 | |||
|phase1_expression=2.40223270657191,0.348975407639361,3.63999391511629,0.60492842261366,0,1.17515490338323,1.16806320297763,1.54947988129892,5.63154888606667,3.97909694747389,1.02730780935303,2.07407613387875,1.54080656938085,1.22388563386596,2.33176833270964,1.21485160433896,0.699561878128147,0.946386496074713,0.959801035240171,0.84877930359606,1.78590909317247,2.28369187762036,4.70159620450084,0.95995453676044,1.60586496747019,1.14846392823004,1.7230479846363,2.58565479223067,1.33016393619462,2.26827116783938,3.10422714917427,1.90509202037889,1.23012957516914,0,1.44425809875637,1.49611180822643,1.42918549383658,0.837063261473815,1.5626706890476,0.523523743973798,0,0.683045484958446,0,3.27331726736501,3.04130793658544,5.13930906052708,7.82391344348039,2.8343270329458,4.61340983742391,4.08302788055995,2.79972843250725,2.87505128729943,0.335565212115473,1.45072428402269,3.02484419228218,1.02903774414379,0.85960031981627,2.57836046138721,4.45096213891115,5.81890077199236,6.97214543856797,3.72728985276045,2.66788438833342,3.1496490104849,2.96659908770092,5.6838409195688,2.39680088414724,7.68436610643109,3.00699875694585,4.59020190327748,5.25812403378455,3.42781181284564,6.18431914664518,3.91970557487853,2.01275489138296,7.35375029288017,6.60695285996332,5.10749352340751,4.91540906419979,4.87979264601717,3.01909223887952,4.68822033501084,5.02529398202486,4.50210088025344,3.20876320331301,4.41942878210502,3.84403538157578,4.10078780815661,1.66597625333005,1.43585964202892,0.579728977403356,0,0,0,1.29955283489534,0.896053774194671,0.421333260395256,3.74946709671727,4.93593408745451,5.65343319216544,3.94361575374705,0,2.54805239706646,0,2.59789249213457,5.32055717497707,3.0331466700887,0.79928715803342,0,0.742210695324124,2.25530924795977,2.74018930480927,0.922461989024234,1.65794904607885,1.41106448562846,1.0053327306374,1.23597483867187,0.433798070759735,1.76922110389975,1.61766849947409,0.220841518460394,0.484875253135222,0,1.75668478206928,2.30391377494801,0.510914110417183,3.83408398418945,9.59844369589452,3.55796635804581,6.14141621559773,5.03250663100489,5.02617408451458,6.25767552692195,5.11430914660661,3.32460871295296,5.353961681236,1.73126918545538,0.870848794270651,2.0217820674694,0.420883711772948,2.60240885925407,3.90833577536904,0.720248519221397,2.41127708537144,1.15662048557257,1.66547836370305,1.49922759295566,1.55222022443409,2.37124792226126,2.08016688184601,2.11141348996739,3.5071317188412,2.50242524303038,1.39300866608867,1.02891068203972,2.58744546864041,5.61770549850588,4.37491442095016,5.96743348730745,2.48550927042602,2.57978665979206,2.52086886045421,0.473489471170421,1.96764231747404,2.00547246753592,0.697601834251224,1.07309360559848,0.583826711835847,1.15191894939436,0.985004784474571,0.162137619091711,0.438599962275997,0,0.268412837520744,5.88811855979556,3.2929475961371,0,0.264450566663544,3.41261200856374,1.16118335930219,1.67527699718721,0.605050573870028,0.889512175379481,1.14135375667535,1.89811624617805,1.4822905925161,1.00534083520108,0.994782360205754,0.38992817423824,1.79763881730844,0.648414149624083,0.199141273254367,2.0863469104839,2.28497025219458,2.25415471346161,1.83286195060783,0.775809948670503,1.05203729835478,1.13825766823663,0.442830443938806,0.627994911365499,0.740382983530803,0.592905254174298,1.33476084572875,1.17935397067922,0.224862112384854,0,0.72353147925725,1.78238096246994,1.15078454980324,0.486405680325106,0.823684239564244,1.43768206527355,0,0.312037673114561,0.757736633841335,0.179397413521912,0,0.184753190166605,3.97931964718018,1.46668478797823,3.90413697282933,2.34690248288502,1.34005005953453,0.476087281772027,2.53673742215138,0.472905432318573,1.55025282754142,0.637819074629948,0.327726629431476,1.38147985492716,0.578596234326046,4.52373851817817,1.63171705145613,1.47529281905711,0.827810238914197,3.21101179975584,3.98519734413491,1.63934945376675,0.504941854408746,3.78609863299508,1.95219372148319,3.66219776145758,2.62865677747807,2.22798674082394,3.11384183867716,2.42886421004937,3.50707029493574,2.76701444562566,3.85585579706168,0.709700426041343,1.78065603667255,1.30309567482861,0.824850614862677,0,4.85561272309963,2.41858845571801,1.88605079755898,2.95301892880773,1.22974059177571,2.06742634534577,2.54473610634254,3.20847640546249,1.26414703174326,0,2.06271086496374,3.06395645178409,2.88097750450096,2.58717367565509,3.00071849044229,1.59606210278046,1.96205699362278,1.81003922662333,3.34911444026059,0.938686832254841,1.48282449604674,1.54369878638473,0.16488625294148,1.45317984026315,1.74907482291652,1.79058516004705,0.820704498725306,0.291480836629851,3.33765543618917,0.854354403989263,2.68302928352189,0.925972636848558,0.188368457004691,0.136694227721025,1.14389086603261,2.20971958992012,3.63873776041511,1.38199973804424,0,4.27053591334533,1.62655573701479,2.59212817972323,2.50905955217362,2.40198820120795,2.29269388854195,0.991841468704031,1.30877970992015,0.777689839750757,0,5.07323644815771,1.79419855252775,3.30916980914195,1.75006069509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| |||
|short_description=p3@Sf3b5 | |||
}} |
Latest revision as of 18:14, 25 September 2015
Short description: | p3@Sf3b5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Sf3b5_5end |
Coexpression cluster: | NA |
Association with transcript: | 84bp_to_ENSMUST00000105139, NM_175102, uc007eki.2_5end |
EntrezGene: | Sf3b5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.86e-14 | 44 |
neurectodermal cell | 1.86e-14 | 44 |
neural cell | 4.70e-14 | 43 |
neuron | 5.40e-12 | 33 |
neuronal stem cell | 5.40e-12 | 33 |
neuroblast | 5.40e-12 | 33 |
electrically signaling cell | 5.40e-12 | 33 |
electrically responsive cell | 1.43e-11 | 39 |
electrically active cell | 1.43e-11 | 39 |
CNS neuron (sensu Vertebrata) | 8.49e-11 | 23 |
neuroblast (sensu Vertebrata) | 8.49e-11 | 23 |
somatic stem cell | 4.43e-09 | 91 |
multi fate stem cell | 4.43e-09 | 91 |
stem cell | 1.92e-08 | 97 |
embryonic cell | 3.93e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.34e-28 | 73 |
nervous system | 2.09e-27 | 75 |
regional part of nervous system | 2.05e-22 | 54 |
neural tube | 6.54e-21 | 52 |
neural rod | 6.54e-21 | 52 |
future spinal cord | 6.54e-21 | 52 |
neural keel | 6.54e-21 | 52 |
ectoderm-derived structure | 3.42e-20 | 95 |
ectoderm | 3.42e-20 | 95 |
presumptive ectoderm | 3.42e-20 | 95 |
neurectoderm | 8.59e-19 | 64 |
neural plate | 8.59e-19 | 64 |
presumptive neural plate | 8.59e-19 | 64 |
brain | 1.13e-18 | 47 |
future brain | 1.13e-18 | 47 |
regional part of brain | 2.85e-18 | 46 |
gray matter | 1.02e-17 | 34 |
anterior neural tube | 5.43e-17 | 40 |
regional part of forebrain | 2.30e-16 | 39 |
forebrain | 2.30e-16 | 39 |
future forebrain | 2.30e-16 | 39 |
ecto-epithelium | 4.16e-16 | 73 |
brain grey matter | 1.52e-15 | 29 |
regional part of telencephalon | 1.52e-15 | 29 |
telencephalon | 1.52e-15 | 29 |
pre-chordal neural plate | 4.15e-14 | 49 |
cerebral cortex | 3.42e-12 | 21 |
cerebral hemisphere | 3.42e-12 | 21 |
pallium | 3.42e-12 | 21 |
regional part of cerebral cortex | 1.87e-10 | 17 |
structure with developmental contribution from neural crest | 2.52e-10 | 92 |
occipital lobe | 3.06e-08 | 10 |
visual cortex | 3.06e-08 | 10 |
neocortex | 3.06e-08 | 10 |