FFCP PHASE1:Hg19::chr2:20251744..20251790,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9741 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6924 | |||
|TSSclassifier=strong | |||
|UniProt=Q15012,Q6IBP4 | |||
|association_with_transcript=0bp_to_ENST00000175091,NM_014713,uc002rdm.2,uc002rdn.2,uc010yjx.1_5end | |||
|cluster_id=chr2:20251744..20251790,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_4_at_LAPTM4A_5end | |||
|id=chr2:20251744..20251790,- | |||
|ontology_enrichment_celltype=CL:0000860!1.70e-18!45;CL:0002057!9.81e-18!42;CL:0000557!8.41e-13!71;CL:0000766!1.28e-12!76;CL:0000839!1.34e-11!70;CL:0002009!2.75e-11!65;CL:0002194!1.11e-10!63;CL:0000576!1.11e-10!63;CL:0000040!1.11e-10!63;CL:0000559!1.11e-10!63;CL:0000048!1.34e-07!430;CL:0000723!3.72e-07!436;CL:0000034!4.91e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.32e-30;33!CL:0002057;6.32e-30;33!CL:0000473;1.85e-21;39!CL:0000234;1.85e-21;39!CL:0000576;5.00e-18;48!CL:0000766;4.94e-13;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.19e-33,42;CL:0002057,4.19e-33,42;CL:0000473,1.10e-29,48;CL:0000234,1.10e-29,48;CL:0000557,1.75e-25,67;CL:0000839,1.79e-24,66;CL:0000766,2.10e-24,72;CL:0002009,5.59e-22,61;CL:0002194,1.57e-21,59;CL:0000576,1.57e-21,59;CL:0000040,1.57e-21,59;CL:0000559,1.57e-21,59;CL:0002031,9.46e-17,120;CL:0000738,6.51e-15,136;CL:0000763,3.13e-13,108;CL:0000049,3.13e-13,108;CL:0002087,5.63e-13,115;CL:0000134,2.03e-12,354;CL:0000048,7.86e-12,427;CL:0002320,9.72e-12,361;CL:0000723,2.56e-11,433;CL:0000034,1.17e-10,441;CL:0002032,1.64e-10,161;CL:0000837,1.64e-10,161;CL:0000219,2.63e-10,386;CL:0000037,1.52e-09,168;CL:0000988,1.65e-09,177 | |||
|ontology_enrichment_development_v019=CL:0002057;1.40e-23;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.96e-12!80;UBERON:0001474!4.18e-12!86;UBERON:0004765!4.08e-10!101;UBERON:0001434!4.08e-10!101;UBERON:0002204!1.24e-09!167;UBERON:0002405!3.72e-08!115;UBERON:0002193!1.66e-07!112 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.20e-22,76;UBERON:0001474,3.15e-21,82;UBERON:0004765,3.02e-18,90;UBERON:0002405,2.55e-17,93;UBERON:0001434,3.35e-16,100;UBERON:0002390,1.06e-14,98;UBERON:0003061,1.06e-14,98;UBERON:0002193,2.81e-13,108;UBERON:0003081,2.83e-13,203;UBERON:0002204,3.33e-12,167;UBERON:0002384,2.37e-11,371;UBERON:0000926,2.14e-10,315;UBERON:0004120,2.14e-10,315;UBERON:0006603,2.14e-10,315 | |||
|phase1_expression=0.908391896352783,1.49870366723688,0.986680828671798,0,1.34088328328186,2.61701557230111,0,0.631719873426831,0.783556884599516,0.491467873003018,0,1.09220686065086,0.263766978228454,0,0.331397375727916,0,0.602694528023977,0,0.975865597581014,0,0.204000691244253,1.25381888591235,0,0.273748850145768,0,0.305653622991805,0.164201178899891,0.236132343941038,2.75354993794233,0.767658796194425,1.23852898652861,0,0,0.369754010166788,0.387336002901508,0,0.293600439334847,3.87796785972314,1.60435557976113,3.47217393145363,0.223915474239924,0,0,1.45398238779565,1.13362783106643,1.69808842831471,3.95129362739664,0.411167888021826,3.71647645074124,2.58923153089935,1.7931249457037,3.07426898855161,2.75796544589295,0.645484683583826,6.77132432971709,3.9530891303947,2.45615535052061,2.02251136000576,5.50951006267625,2.88836124368484,5.11469700639233,1.31940520074686,0.997318288108159,2.55734850319616,3.77272010217159,0.56738522469114,1.86846674698672,5.27622197039161,2.60741459210101,4.77815458351257,1.21079900526674,2.20966581592539,3.16462387440884,0,1.06302149982522,0.838634582033504,1.01095768031846,1.20141514273205,0.48217676009124,0,0.99458338599545,0.182664153764634,0,0,0,0,0.800791974072025,0,0,0,1.1384259382189,1.76171156811282,0.382273228125229,0,0,0.526768169550154,0.393419540227666,0.393010762749165,2.05601498999509,0,0.651844533267181,0,0,0,0,0,1.08321545506006,0.128091319725675,0.130059347559878,0,0,0,0.741432815810302,0.267540828089713,0,0,0.766440987203842,0.34362744548263,0.253019692019503,0,0,0,0.301150238155546,0,0,0.710331756132051,0,1.41124720257313,1.06976078313403,1.44824403882799,0,0,0.383587685530591,1.80719576192283,0.50133791063589,1.59331170856906,0,1.94653948121054,0.0945348171640679,0.221729397462564,0.43917392846563,29.2083338359899,0.364295288292542,0,0,0,0.132957960518865,0.715471872916026,0,0,0.198762407366705,0,0,0.56530794192401,1.67799774483962,0.825354125820202,0.417989933073621,0,0.71153252537342,0,0,0,0,0.367663080345869,0.81014194788176,0.0892997282840798,0,0.112611480483322,0,0.949265659568129,0.183201743930407,0,0,0,1.49091585508596,0.379891534993739,1.05927344650575,1.14734648299525,0.354668382198357,0,0,0.74000264525148,0,0.269421344139376,0.163461903113459,0.605429710579726,0,0.468642863667593,0.312160076830321,1.1409436430889,0.448346041655403,0.117434498643765,0.323745888736263,0.280901613404497,0,0.122834317311768,0,1.18800285728205,0.247266929278557,0.910161361938026,0.718618141816238,0.336672227908132,0,0,0,0.612975591598039,0.751190294532984,0.113432183160021,0.717558542755448,0.213557388818567,0.211931901159562,1.20036438433761,0.721367704669072,0.515281080091258,0.744467425326359,0.506328996723799,0.389748020644795,0,0.736399189138395,0,1.06502877754984,0.302256294682921,0.67824236924195,0.193260853163297,0.545492241181669,0.286804595389004,0.243947412259191,0.132529768321485,0.580969714347592,0.518305275076852,0.504641701751257,0,0,0.643240938192885,0,0,1.44375896333917,1.30137480043828,0.674338760312407,1.20505514941741,0.772057809126758,0.871517776369625,0.71181185733329,1.07865046528132,0.196221465125346,1.15424147083917,0,0,0,0,0,0,0,0,0.245976877086227,0.343135620597051,0,0,0.301586917234893,0.462942225792648,0.325808305310325,1.03993478527958,0,0.34779121492523,0.234817388471643,0.866198686566443,3.24089858803628,0.951270761172991,1.58040879591855,1.71697232418975,0.246217006087397,0,0.594524649154913,0,0.839910640994298,0.283550194484773,0.626909658919938,0.290633938513962,0,2.46331618947972,0.616339038092582,3.7319060797339,5.76479813667846,1.76739406796932,0.317489471460845,0,0,0,0,0,0.285826432630578,0.784917590417525,0.43596006883328,0.2933531432838,1.03417372606222,0,0,1.06375246633948,1.04007436911366,0.257207374262142,1.41849132023278,0.799266537048298,0.142977993658148,0.542621605391443,0,0,0.355391948742546,0,0,0,0.399891964728228,0,0,2.10833939483032,1.19812427745791,1.14861935834114,0,1.01346914667305,0.205476322550383,0.358121926479791,0,0.197030760201927,1.2937654491571,1.79680250791648,1.52456774533478,0,0,0.335032530668698,0,0.749007023947182,0,0.828831026872071,0.24538298343828,0.500170521059677,0.542530047399471,0.831883446123229,0.535286966391485,0.157702415033935,0,1.20378439891088,2.27407504055985,0,0,0.184369168541703,0.521301686808497,0.587403472388222,0.686286847621712,0.413536052245775,0.647142602455851,0.426910231213777,0.909382714338778,0,1.5119514666484,0.992431231275107,0.767309866440312,1.12264037773229,1.02511319404561,0,0.482561763430822,0,0.308419387605311,0.532685175939381,0.410635780069046,0.519254429183621,0.232420756919918,0.846016147141356,0.200506470303285,0.552485933615378,0.459257792658427,0.182091168006717,0.655622074797121,0,0.462092022626489,0.784349769176855,0,0.105551628892876,0,0.850468526382578,0.215915916102139,1.54227252690289,0,0,0,0,0.671624264166535,0,0,0.512900250232778,0,3.25378394664303,0.412164046590889,0.54941678891006,0.41254749960294,0.574265537996172,0,1.6068392984416,0.96670718292122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| |||
|short_description=p4@LAPTM4A | |||
}} |
Latest revision as of 13:40, 19 September 2015
Short description: | p4@LAPTM4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LAPTM4A_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000175091, NM_014713, uc002rdm.2, uc002rdn.2, uc010yjx.1_5end |
EntrezGene: | LAPTM4A |
HGNC: | 6924 |
UniProt: | Q15012Q6IBP4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.19e-33 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.19e-33 | 42 |
defensive cell | 1.10e-29 | 48 |
phagocyte | 1.10e-29 | 48 |
granulocyte monocyte progenitor cell | 1.75e-25 | 67 |
myeloid lineage restricted progenitor cell | 1.79e-24 | 66 |
myeloid leukocyte | 2.10e-24 | 72 |
macrophage dendritic cell progenitor | 5.59e-22 | 61 |
monopoietic cell | 1.57e-21 | 59 |
monocyte | 1.57e-21 | 59 |
monoblast | 1.57e-21 | 59 |
promonocyte | 1.57e-21 | 59 |
hematopoietic lineage restricted progenitor cell | 9.46e-17 | 120 |
leukocyte | 6.51e-15 | 136 |
myeloid cell | 3.13e-13 | 108 |
common myeloid progenitor | 3.13e-13 | 108 |
nongranular leukocyte | 5.63e-13 | 115 |
mesenchymal cell | 2.03e-12 | 354 |
multi fate stem cell | 7.86e-12 | 427 |
connective tissue cell | 9.72e-12 | 361 |
somatic stem cell | 2.56e-11 | 433 |
stem cell | 1.17e-10 | 441 |
hematopoietic oligopotent progenitor cell | 1.64e-10 | 161 |
hematopoietic multipotent progenitor cell | 1.64e-10 | 161 |
motile cell | 2.63e-10 | 386 |
hematopoietic stem cell | 1.52e-09 | 168 |
hematopoietic cell | 1.65e-09 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.20e-22 | 76 |
bone element | 3.15e-21 | 82 |
skeletal element | 3.02e-18 | 90 |
immune system | 2.55e-17 | 93 |
skeletal system | 3.35e-16 | 100 |
hematopoietic system | 1.06e-14 | 98 |
blood island | 1.06e-14 | 98 |
hemolymphoid system | 2.81e-13 | 108 |
lateral plate mesoderm | 2.83e-13 | 203 |
musculoskeletal system | 3.33e-12 | 167 |
connective tissue | 2.37e-11 | 371 |
mesoderm | 2.14e-10 | 315 |
mesoderm-derived structure | 2.14e-10 | 315 |
presumptive mesoderm | 2.14e-10 | 315 |