FFCP PHASE1:Hg19::chr9:134615306..134615315,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr9:134615306..134615315,-
|short_description=p10@RAPGEF1
|description=CAGE_peak_10_at_RAPGEF1_5end
|association_with_transcript=15bp_to_ENST00000438647_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2889 | |EntrezGene=2889 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4568 | |HGNC=4568 | ||
|TSSclassifier=strong | |||
|UniProt=Q5JUE9 | |UniProt=Q5JUE9 | ||
|association_with_transcript=15bp_to_ENST00000438647_5end | |||
|cluster_id=chr9:134615306..134615315,- | |||
|description=CAGE_peak_10_at_RAPGEF1_5end | |||
|id=chr9:134615306..134615315,- | |||
|ontology_enrichment_celltype=CL:0000738!2.72e-30!140;CL:0000988!2.33e-23!182;CL:0002057!2.38e-23!42;CL:0000860!3.37e-23!45;CL:0002087!6.09e-23!119;CL:0002009!6.55e-23!65;CL:0000557!7.57e-23!71;CL:0000037!8.58e-23!172;CL:0000566!8.58e-23!172;CL:0000766!3.25e-22!76;CL:0002031!6.37e-22!124;CL:0002194!3.18e-21!63;CL:0000576!3.18e-21!63;CL:0000040!3.18e-21!63;CL:0000559!3.18e-21!63;CL:0002032!8.74e-20!165;CL:0000837!8.74e-20!165;CL:0000839!2.73e-19!70;CL:0000763!3.63e-16!112;CL:0000049!3.63e-16!112;CL:0000451!8.49e-09!10;CL:0000990!6.67e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000784;2.87e-30;3!CL:0000860;4.44e-20;33!CL:0002057;4.44e-20;33!CL:0000451;8.13e-15;10!CL:0000576;8.26e-14;48!CL:0000473;4.73e-13;39!CL:0000234;4.73e-13;39!CL:0002032;2.81e-11;1!CL:0000557;2.81e-11;1!CL:0000766;3.38e-09;69!CL:0000738;5.10e-08;136!CL:0000763;1.07e-07;100!CL:0000840;1.11e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,4.10e-30,3;CL:0000557,8.85e-23,67;CL:0000860,3.10e-22,42;CL:0002057,3.10e-22,42;CL:0002009,2.35e-21,61;CL:0000766,3.54e-21,72;CL:0000473,2.75e-19,48;CL:0000234,2.75e-19,48;CL:0000738,1.31e-18,136;CL:0002194,1.88e-18,59;CL:0000576,1.88e-18,59;CL:0000040,1.88e-18,59;CL:0000559,1.88e-18,59;CL:0000763,2.13e-18,108;CL:0000049,2.13e-18,108;CL:0000037,1.33e-16,168;CL:0000839,2.33e-16,66;CL:0000988,1.24e-15,177;CL:0000451,9.57e-15,10;CL:0002032,1.90e-13,161;CL:0000837,1.90e-13,161;CL:0002031,5.75e-12,120;CL:0002087,1.46e-10,115;CL:0000840,9.26e-08,5;CL:0001029,9.26e-08,5 | |||
|ontology_enrichment_development_v019=CL:0002057;9.07e-19;42!CL:0000049;6.46e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.68e-19!80;UBERON:0002193!1.62e-17!112;UBERON:0001474!3.48e-17!86;UBERON:0002390!3.55e-17!102;UBERON:0003061!3.55e-17!102;UBERON:0002405!7.60e-17!115;UBERON:0004765!2.03e-16!101;UBERON:0001434!2.03e-16!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.87e-20,76;UBERON:0001474,2.61e-18,82;UBERON:0004765,1.58e-16,90;UBERON:0002405,6.18e-16,93;UBERON:0002390,4.97e-15,98;UBERON:0003061,4.97e-15,98;UBERON:0001434,1.08e-14,100;UBERON:0002193,1.82e-13,108;UBERON:0002204,5.10e-08,167 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0.204000691244253,0,0,0,0,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0.383829398097213,0.154816123316076,0,0,0,1.85921281392724,0.142169232487422,0.293600439334847,0.553995408531877,0.401088894940283,1.30206522429511,0.223915474239924,0,0.257575567634187,1.45398238779565,1.13362783106643,0.242584061187816,1.39457422143411,0.822335776043652,0,0.575384784644301,0.512321413058201,0.236482229888585,0.689491361473237,0,0,0.564727018627814,1.36453075028923,0.898893937780338,0.306083892370903,1.60464513538047,3.19668562899521,0.329851300186716,0.199463657621632,0,1.16083695451434,0.56738522469114,0,0.502497330513487,0.521482918420201,0.217188844705117,0.605399502633369,1.10483290796269,1.26584954976354,0.422510572623884,0.212604299965044,0,0.336985893439485,0.300353785683013,0.16072558669708,0.570025487482497,0.19891667719909,0.365328307529268,0,0,0,0.426730222566507,0,0,0,0,0,0,0.382273228125229,1.32171328579026,1.12101712596307,0,0,0,0.411202997999018,0.167186495390678,0,0,0,0,0,0,0,0.128091319725675,0.130059347559878,0.164437904603676,0,0,0,0.267540828089713,0,0,0,0.34362744548263,0,0.318565414324097,0,0,0.150575119077773,0.127986611154418,0,0.473554504088034,0.821127996921047,0.403213486449465,0.534880391567015,0,0,0,0,0,0,0,0.795285947051099,0,0,0,0,0,0,0,0.649094787309367,0,0.132957960518865,1.66943437013739,1.14398982156026,1.11437250398869,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0.225222960966644,0,0.949265659568129,0.366403487860815,2.63560834872127,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0.30648779579902,0.300476117813194,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0.184099797284599,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0.590789906681404,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0.288732895522148,0.462985512576611,0.190254152234598,0,0,0.246217006087397,0.234004265139238,0.297262324577456,0,0,0.141775097242386,0,0,0,0,0.264145302039678,0,0.144119953416961,0,0.063497894292169,0.381988425558278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0.224170287987055,0.197030760201927,0.215627574859517,0.128343036279748,0.254094624222463,0,0.773288812777695,0.335032530668698,0.637938751653163,0,2.99161459204025,0.828831026872071,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0.184369168541703,0,0,0.343143423810856,0.206768026122887,0,0.533637789017222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0.0770153371044148,0,0,0,0,0.170093705276516,0.215915916102139,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0.170453254832202,0.356128142586949,0,0.192190067365106,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0.476463550915578,0,0,0,0,0,0,0,0.557409525377156,0.144269212976445,0.0711418433484141,0,0,0,0,0,0,0,0,0,0.50787533340481,0.1605880751037,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0,0.16480387422676,0,0,0.276283915531148,0.251932747854276,0.102268682502155,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0.120596438625408,0,0.331737779793674,0,0,0.10893846351899,0.697118721393016,0.153900517007594,0.113942055847001,0,0.179515288819544,0,0.31900115973192,0.274792780205587,0,0,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0.104421949505455,0.067401132980677,0,0,0,0,0,0.789168805698781,0,0,0.31593289814244,0.751617097072463,0,0,0,0,0,0,0.277349346026277,0,0.0979923974143777,0,0,0,0,0.0730893170861856,0.246346371159628,0,0,0,0,0,0.126621591911757,0.195551382734803,0,0,0,0,0,0,0,0,0.235694034616795,0,0.209205692624666,0.101998217636322,0.577901179803038,0,0,1.27746588066972,0,0.262887354279314,0,0,0,0,0.858452096273142,0,0.134366944973453,0,0,0,0.164831716762333,0.13480708770837,0,0.0846733320657845,0,0,0,0,0,2.4747128070665,0.77380195455795,0.121499113316049,0.670869375198532,0.394028536495991,0.0524545881349981,0,0,0.191915197319445,0,0.662091970365432,0,0,0,0,0,0,0,0,0.146552233678082,0,0.258565912723101,0,0,0,0,0,0.414239055347196,0,0,0.243585196761792,0,0,0,0,0,0.157054096250234,0,0,0,0,0.221858103073705,0.0620964029413835,0.138348634936231,0,0,0,0.470531639396343,0.468334905806882,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0.308801447160972,0,0.176689145945881,0,0,0,0,0,0.138258436151731,0.584580926518165,0.664324201566815,0.327130788511688,0,0,0,0.19998739585493,0,0,0.567515953566836,0.368211900503681,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0.128458450192919,0,0,0.41023272848151,0,0.0691572524642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| ||
|short_description=p10@RAPGEF1 | |||
}} | }} |
Latest revision as of 03:45, 16 September 2015
Short description: | p10@RAPGEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_RAPGEF1_5end |
Coexpression cluster: | NA |
Association with transcript: | 15bp_to_ENST00000438647_5end |
EntrezGene: | RAPGEF1 |
HGNC: | 4568 |
UniProt: | Q5JUE9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 4.10e-30 | 3 |
granulocyte monocyte progenitor cell | 8.85e-23 | 67 |
classical monocyte | 3.10e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.10e-22 | 42 |
macrophage dendritic cell progenitor | 2.35e-21 | 61 |
myeloid leukocyte | 3.54e-21 | 72 |
defensive cell | 2.75e-19 | 48 |
phagocyte | 2.75e-19 | 48 |
leukocyte | 1.31e-18 | 136 |
monopoietic cell | 1.88e-18 | 59 |
monocyte | 1.88e-18 | 59 |
monoblast | 1.88e-18 | 59 |
promonocyte | 1.88e-18 | 59 |
myeloid cell | 2.13e-18 | 108 |
common myeloid progenitor | 2.13e-18 | 108 |
hematopoietic stem cell | 1.33e-16 | 168 |
myeloid lineage restricted progenitor cell | 2.33e-16 | 66 |
hematopoietic cell | 1.24e-15 | 177 |
dendritic cell | 9.57e-15 | 10 |
hematopoietic oligopotent progenitor cell | 1.90e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.90e-13 | 161 |
hematopoietic lineage restricted progenitor cell | 5.75e-12 | 120 |
nongranular leukocyte | 1.46e-10 | 115 |
immature conventional dendritic cell | 9.26e-08 | 5 |
common dendritic progenitor | 9.26e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.87e-20 | 76 |
bone element | 2.61e-18 | 82 |
skeletal element | 1.58e-16 | 90 |
immune system | 6.18e-16 | 93 |
hematopoietic system | 4.97e-15 | 98 |
blood island | 4.97e-15 | 98 |
skeletal system | 1.08e-14 | 100 |
hemolymphoid system | 1.82e-13 | 108 |
musculoskeletal system | 5.10e-08 | 167 |