FFCP PHASE1:Hg19::chr2:131113593..131113604,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26469 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9649 | |||
|TSSclassifier=strong | |||
|UniProt=Q99952,B4E1E6 | |||
|association_with_transcript=13bp_to_,-13bp_to_ENST00000175756,ENST00000347849,NM_001142370,NM_014369,uc002trb.2,uc002trc.2,uc002trd.2_5end | |||
|cluster_id=chr2:131113593..131113604,+ | |||
|description=CAGE_peak_6_at_PTPN18_5end | |||
|id=chr2:131113593..131113604,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.51e-23!115;UBERON:0003080!3.37e-14!42;UBERON:0001049!4.27e-14!57;UBERON:0005068!4.27e-14!57;UBERON:0006241!4.27e-14!57;UBERON:0007135!4.27e-14!57;UBERON:0002780!7.00e-14!41;UBERON:0001890!7.00e-14!41;UBERON:0006240!7.00e-14!41;UBERON:0002616!2.33e-12!59;UBERON:0001869!2.42e-12!32;UBERON:0001893!2.99e-12!34;UBERON:0000955!3.85e-12!69;UBERON:0006238!3.85e-12!69;UBERON:0002791!4.79e-12!33;UBERON:0002020!7.04e-12!34;UBERON:0003528!7.04e-12!34;UBERON:0001017!5.15e-11!82;UBERON:0002619!8.45e-11!22;UBERON:0005743!2.44e-10!86;UBERON:0001950!2.72e-10!20;UBERON:0000956!2.93e-09!25;UBERON:0000203!2.93e-09!25;UBERON:0003075!3.03e-09!86;UBERON:0007284!3.03e-09!86;UBERON:0000073!1.13e-08!94;UBERON:0001016!1.13e-08!94;UBERON:0002346!1.47e-08!90;UBERON:0003056!2.73e-08!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;5.13e-14;32!UBERON:0001893;1.55e-13;34!UBERON:0002791;4.28e-13;32!UBERON:0003528;2.21e-12;34!UBERON:0002020;2.21e-12;34!UBERON:0002619;2.67e-12;22!UBERON:0002780;6.71e-12;41!UBERON:0001890;6.71e-12;41!UBERON:0001950;2.17e-11;20!UBERON:0000956;3.21e-11;25!UBERON:0000203;3.21e-11;25!UBERON:0000073;2.84e-09;53!UBERON:0002616;2.84e-09;53!UBERON:0007023;4.46e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.53e-21,114;UBERON:0001869,2.04e-16,32;UBERON:0002780,2.17e-16,41;UBERON:0001890,2.17e-16,41;UBERON:0003080,2.17e-16,41;UBERON:0006240,2.17e-16,41;UBERON:0000073,2.68e-16,53;UBERON:0002616,2.68e-16,53;UBERON:0001893,4.64e-16,34;UBERON:0001049,7.46e-16,56;UBERON:0005068,7.46e-16,56;UBERON:0006241,7.46e-16,56;UBERON:0007135,7.46e-16,56;UBERON:0002791,2.66e-15,32;UBERON:0003528,6.61e-15,34;UBERON:0002020,6.61e-15,34;UBERON:0002619,4.53e-13,22;UBERON:0001950,3.12e-12,20;UBERON:0000956,1.12e-11,25;UBERON:0000203,1.12e-11,25;UBERON:0000955,1.77e-11,68;UBERON:0006238,1.77e-11,68;UBERON:0001017,7.92e-10,81;UBERON:0003056,6.02e-09,61;UBERON:0001016,2.71e-08,89;UBERON:0003075,4.15e-08,82;UBERON:0007284,4.15e-08,82;UBERON:0002346,7.15e-08,86;UBERON:0011216,6.00e-07,223 | |||
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| |||
|short_description=p6@PTPN18 | |||
}} |
Latest revision as of 22:43, 16 September 2015
Short description: | p6@PTPN18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PTPN18_5end |
Coexpression cluster: | NA |
Association with transcript: | 13bp_to_, -13bp_to_ENST00000175756, ENST00000347849, NM_001142370, NM_014369, uc002trb.2, uc002trc.2, uc002trd.2_5end |
EntrezGene: | PTPN18 |
HGNC: | 9649 |
UniProt: | Q99952B4E1E6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 6.53e-21 | 114 |
cerebral hemisphere | 2.04e-16 | 32 |
regional part of forebrain | 2.17e-16 | 41 |
forebrain | 2.17e-16 | 41 |
anterior neural tube | 2.17e-16 | 41 |
future forebrain | 2.17e-16 | 41 |
regional part of nervous system | 2.68e-16 | 53 |
regional part of brain | 2.68e-16 | 53 |
telencephalon | 4.64e-16 | 34 |
neural tube | 7.46e-16 | 56 |
neural rod | 7.46e-16 | 56 |
future spinal cord | 7.46e-16 | 56 |
neural keel | 7.46e-16 | 56 |
regional part of telencephalon | 2.66e-15 | 32 |
brain grey matter | 6.61e-15 | 34 |
gray matter | 6.61e-15 | 34 |
regional part of cerebral cortex | 4.53e-13 | 22 |
neocortex | 3.12e-12 | 20 |
cerebral cortex | 1.12e-11 | 25 |
pallium | 1.12e-11 | 25 |
brain | 1.77e-11 | 68 |
future brain | 1.77e-11 | 68 |
central nervous system | 7.92e-10 | 81 |
pre-chordal neural plate | 6.02e-09 | 61 |
nervous system | 2.71e-08 | 89 |
neural plate | 4.15e-08 | 82 |
presumptive neural plate | 4.15e-08 | 82 |
neurectoderm | 7.15e-08 | 86 |
organ system subdivision | 6.00e-07 | 223 |