FFCP PHASE1:Hg19::chr22:30642738..30642754,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3976 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6596 | |||
|TSSclassifier=strong | |||
|UniProt=B5MC23 | |||
|association_with_transcript=-10bp_to_ENST00000403987_5end | |||
|cluster_id=chr22:30642738..30642754,- | |||
|description=CAGE_peak_1_at_LIF_5end | |||
|id=chr22:30642738..30642754,- | |||
|ontology_enrichment_celltype=CL:0000680!2.32e-19!57;CL:0000056!2.32e-19!57;CL:0000355!2.32e-19!57;CL:0000192!1.41e-18!42;CL:0000514!1.41e-18!42;CL:0000187!3.65e-18!54;CL:0000183!2.42e-17!59;CL:0000359!2.60e-17!32;CL:0000393!1.89e-16!60;CL:0000211!1.89e-16!60;CL:0000055!4.77e-15!180;CL:0000222!1.63e-11!119;CL:0000220!6.88e-09!246;CL:0002321!1.85e-08!248 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.75e-17;32!CL:0000192;5.93e-14;43!CL:0000187;4.33e-10;55!CL:0000393;1.80e-08;61!CL:0000211;1.80e-08;61!CL:0002539;5.67e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,2.40e-20,58;CL:0000056,2.40e-20,58;CL:0000355,2.40e-20,58;CL:0000192,2.75e-19,43;CL:0000514,2.75e-19,43;CL:0000187,4.41e-19,55;CL:0000359,3.40e-18,32;CL:0000393,1.83e-17,61;CL:0000211,1.83e-17,61;CL:0000222,1.35e-12,121;CL:0002321,1.77e-09,250;CL:0002539,5.47e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000514;5.93e-14;43!CL:0000355;2.48e-10;58 | |||
|ontology_enrichment_disease=DOID:2394!2.84e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;8.95e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.04e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0001134!1.13e-17!61;UBERON:0002036!1.13e-17!61;UBERON:0003082!1.13e-17!61;UBERON:0000486!1.19e-17!82;UBERON:0005256!1.75e-17!143;UBERON:0000914!4.20e-17!83;UBERON:0002329!4.20e-17!83;UBERON:0003077!4.20e-17!83;UBERON:0003059!4.20e-17!83;UBERON:0007282!4.20e-17!83;UBERON:0009618!4.20e-17!83;UBERON:0007285!4.20e-17!83;UBERON:0002385!4.44e-17!63;UBERON:0001015!4.44e-17!63;UBERON:0000383!4.44e-17!63;UBERON:0004290!7.42e-17!70;UBERON:0002204!4.86e-12!167;UBERON:0002100!2.17e-11!216;UBERON:0000481!5.66e-11!347;UBERON:0003104!7.74e-10!238;UBERON:0009142!7.74e-10!238;UBERON:0000119!3.96e-09!312;UBERON:0004573!6.14e-09!33;UBERON:0004571!6.14e-09!33;UBERON:0001637!7.91e-09!42;UBERON:0003509!7.91e-09!42;UBERON:0004572!7.91e-09!42;UBERON:0000483!7.94e-09!309;UBERON:0003914!2.40e-08!118;UBERON:0000923!1.76e-07!604;UBERON:0005291!1.76e-07!604;UBERON:0006598!1.76e-07!604;UBERON:0002532!1.76e-07!604;UBERON:0000475!1.82e-07!365;UBERON:0000490!1.98e-07!138;UBERON:0002050!1.99e-07!605;UBERON:0005423!1.99e-07!605;UBERON:0002049!3.05e-07!79;UBERON:0007798!3.05e-07!79;UBERON:0003103!3.47e-07!69;UBERON:0000467!5.87e-07!625;UBERON:0000922!8.39e-07!612;UBERON:0000480!9.23e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;7.80e-09;33!UBERON:0004571;7.80e-09;33!UBERON:0004237;5.67e-07;10!UBERON:0004695;5.67e-07;10!UBERON:0002111;5.67e-07;10!UBERON:0004178;5.67e-07;10!UBERON:0001637;9.64e-07;42!UBERON:0003509;9.64e-07;42!UBERON:0004572;9.64e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,2.26e-18,62;UBERON:0002036,2.26e-18,62;UBERON:0003082,2.26e-18,62;UBERON:0002385,9.23e-18,64;UBERON:0001015,9.23e-18,64;UBERON:0000383,9.23e-18,64;UBERON:0000486,1.19e-17,83;UBERON:0003104,1.68e-17,160;UBERON:0009142,1.68e-17,160;UBERON:0007503,3.04e-17,78;UBERON:0002329,4.54e-17,71;UBERON:0003059,4.54e-17,71;UBERON:0007282,4.54e-17,71;UBERON:0004290,4.54e-17,71;UBERON:0009618,4.54e-17,71;UBERON:0007524,5.66e-17,73;UBERON:0003077,2.09e-16,72;UBERON:0007285,2.09e-16,72;UBERON:0005256,2.78e-14,122;UBERON:0002204,1.90e-12,167;UBERON:0002100,5.82e-11,199;UBERON:0001637,3.49e-10,42;UBERON:0003509,3.49e-10,42;UBERON:0004572,3.49e-10,42;UBERON:0004573,5.13e-10,33;UBERON:0004571,5.13e-10,33;UBERON:0003914,1.59e-09,117;UBERON:0000119,6.29e-09,309;UBERON:0000483,1.28e-08,306;UBERON:0002049,5.87e-08,78;UBERON:0007798,5.87e-08,78;UBERON:0000490,8.22e-08,148;UBERON:0003103,1.59e-07,68;UBERON:0004237,5.47e-07,10;UBERON:0004695,5.47e-07,10;UBERON:0002111,5.47e-07,10;UBERON:0004178,5.47e-07,10;UBERON:0000926,5.56e-07,315;UBERON:0004120,5.56e-07,315;UBERON:0006603,5.56e-07,315;UBERON:0004535,5.91e-07,109;UBERON:0001009,8.81e-07,112 | |||
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| |||
|short_description=p1@LIF | |||
}} |
Latest revision as of 16:58, 19 September 2015
Short description: | p1@LIF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LIF_5end |
Coexpression cluster: | NA |
Association with transcript: | -10bp_to_ENST00000403987_5end |
EntrezGene: | LIF |
HGNC: | 6596 |
UniProt: | B5MC23 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 2.40e-20 | 58 |
myoblast | 2.40e-20 | 58 |
multi-potent skeletal muscle stem cell | 2.40e-20 | 58 |
smooth muscle cell | 2.75e-19 | 43 |
smooth muscle myoblast | 2.75e-19 | 43 |
muscle cell | 4.41e-19 | 55 |
vascular associated smooth muscle cell | 3.40e-18 | 32 |
electrically responsive cell | 1.83e-17 | 61 |
electrically active cell | 1.83e-17 | 61 |
mesodermal cell | 1.35e-12 | 121 |
embryonic cell | 1.77e-09 | 250 |
aortic smooth muscle cell | 5.47e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.04e-08 | 14 |