FFCP PHASE1:Hg19::chr20:55966444..55966462,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55544 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15818 | |||
|TSSclassifier=strong | |||
|UniProt=Q9H0Z9 | |||
|association_with_transcript=0bp_to_ENST00000356208,NM_017495,NM_183425,uc010zzj.1,uc010zzk.1_5end | |||
|cluster_id=chr20:55966444..55966462,+ | |||
|coexpression_cluster_id=C14 | |||
|description=CAGE_peak_1_at_RBM38_5end | |||
|id=chr20:55966444..55966462,+ | |||
|ontology_enrichment_celltype=CL:0000988!8.71e-28!182;CL:0000037!2.01e-26!172;CL:0000566!2.01e-26!172;CL:0000542!3.05e-24!53;CL:0000051!3.05e-24!53;CL:0000838!5.69e-24!52;CL:0002032!1.80e-23!165;CL:0000837!1.80e-23!165;CL:0000738!2.43e-21!140;CL:0002031!1.82e-17!124;CL:0002087!1.14e-16!119;CL:0000945!1.15e-11!24;CL:0000826!1.15e-11!24;CL:0000084!1.15e-11!25;CL:0000827!1.15e-11!25;CL:0000791!7.01e-10!18;CL:0000789!7.01e-10!18;CL:0002420!7.01e-10!18;CL:0002419!7.01e-10!18;CL:0000790!7.01e-10!18;CL:0000236!1.15e-08!14 | |||
|ontology_enrichment_celltype_v019=CL:0000542;2.29e-14;53!CL:0000945;1.09e-11;24!CL:0000084;1.17e-11;25!CL:0000791;6.97e-10;18!CL:0000789;6.97e-10;18!CL:0002419;6.97e-10;18!CL:0000236;3.88e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.61e-29,177;CL:0000037,4.35e-28,168;CL:0002032,4.72e-25,161;CL:0000837,4.72e-25,161;CL:0000542,3.05e-24,53;CL:0000051,3.05e-24,53;CL:0000838,5.69e-24,52;CL:0000738,5.37e-23,136;CL:0002031,4.97e-19,120;CL:0002087,3.17e-18,115;CL:0000945,1.15e-11,24;CL:0000826,1.15e-11,24;CL:0000084,1.15e-11,25;CL:0000827,1.15e-11,25;CL:0000791,7.01e-10,18;CL:0000789,7.01e-10,18;CL:0002420,7.01e-10,18;CL:0002419,7.01e-10,18;CL:0000790,7.01e-10,18;CL:0000236,1.15e-08,14;CL:0000763,7.73e-07,108;CL:0000049,7.73e-07,108 | |||
|ontology_enrichment_development_v019=CL:0000051;2.29e-14;53!CL:0000790;6.97e-10;18 | |||
|ontology_enrichment_disease=DOID:2531!2.04e-07!51;DOID:0060083!2.04e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2531,2.04e-07,51;DOID:0060083,2.04e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0000178!5.36e-11!15;UBERON:0000179!5.36e-11!15;UBERON:0000463!5.36e-11!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.32e-11;15!UBERON:0000179;5.32e-11;15!UBERON:0000463;5.32e-11;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,5.36e-11,15;UBERON:0000179,5.36e-11,15;UBERON:0000463,5.36e-11,15;UBERON:0002193,7.29e-07,108 | |||
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| |||
|short_description=p1@RBM38 | |||
}} |
Latest revision as of 04:10, 17 September 2015
Short description: | p1@RBM38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RBM38_5end |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | 0bp_to_ENST00000356208, NM_017495, NM_183425, uc010zzj.1, uc010zzk.1_5end |
EntrezGene: | RBM38 |
HGNC: | 15818 |
UniProt: | Q9H0Z9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.61e-29 | 177 |
hematopoietic stem cell | 4.35e-28 | 168 |
hematopoietic oligopotent progenitor cell | 4.72e-25 | 161 |
hematopoietic multipotent progenitor cell | 4.72e-25 | 161 |
lymphocyte | 3.05e-24 | 53 |
common lymphoid progenitor | 3.05e-24 | 53 |
lymphoid lineage restricted progenitor cell | 5.69e-24 | 52 |
leukocyte | 5.37e-23 | 136 |
hematopoietic lineage restricted progenitor cell | 4.97e-19 | 120 |
nongranular leukocyte | 3.17e-18 | 115 |
lymphocyte of B lineage | 1.15e-11 | 24 |
pro-B cell | 1.15e-11 | 24 |
T cell | 1.15e-11 | 25 |
pro-T cell | 1.15e-11 | 25 |
mature alpha-beta T cell | 7.01e-10 | 18 |
alpha-beta T cell | 7.01e-10 | 18 |
immature T cell | 7.01e-10 | 18 |
mature T cell | 7.01e-10 | 18 |
immature alpha-beta T cell | 7.01e-10 | 18 |
B cell | 1.15e-08 | 14 |
myeloid cell | 7.73e-07 | 108 |
common myeloid progenitor | 7.73e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
blood | 5.36e-11 | 15 |
haemolymphatic fluid | 5.36e-11 | 15 |
organism substance | 5.36e-11 | 15 |
hemolymphoid system | 7.29e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 2.04e-07 | 51 |
immune system cancer | 2.04e-07 | 51 |