FFCP PHASE1:Hg19::chr9:123163075..123163103,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:123163075..123163103,-
|short_description=p17@CDK5RAP2
|description=CAGE_peak_17_at_CDK5RAP2_5end
|association_with_transcript=193bp_to_ENST00000474262_5en...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55755 | |EntrezGene=55755 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18672 | |HGNC=18672 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=193bp_to_ENST00000474262_5end | |||
|cluster_id=chr9:123163075..123163103,- | |||
|coexpression_cluster_id=C125 | |||
|description=CAGE_peak_17_at_CDK5RAP2_5end | |||
|id=chr9:123163075..123163103,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000319;2.66e-18;1!CL:0000228;8.72e-18;1!CL:0002372;8.72e-18;1!CL:0002591;8.72e-18;1!CL:0000056;2.02e-17;4!CL:0000235;4.55e-12;6!CL:0000680;2.24e-10;7!CL:0000159;7.97e-10;2!CL:0000346;8.62e-07;3!CL:1000428;8.62e-07;3!CL:0000515;8.62e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000319,2.66e-18,1;CL:0000228,6.23e-18,1;CL:0002372,6.23e-18,1;CL:0000515,1.33e-17,4;CL:0002591,1.44e-17,1;CL:0000235,4.81e-12,6;CL:0000159,7.98e-10,2;CL:0000346,8.15e-07,3;CL:1000428,8.15e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000515;2.02e-17;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3030;2.66e-18;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,2.66e-18,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0007195;8.72e-18;1!UBERON:0000078;1.44e-09;2!UBERON:0002012;1.44e-09;2!UBERON:0008886;1.44e-09;2!UBERON:0000412;8.62e-07;3!UBERON:0001992;8.62e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007195,1.70e-17,1;UBERON:0000078,1.86e-09,2;UBERON:0007497,1.86e-09,2;UBERON:0003643,1.86e-09,2;UBERON:0003504,1.86e-09,2;UBERON:0003469,1.86e-09,2;UBERON:0003496,1.86e-09,2;UBERON:0002012,1.86e-09,2;UBERON:0008886,1.86e-09,2;UBERON:0007303,1.86e-09,2;UBERON:0002061,1.86e-09,2;UBERON:0005432,1.86e-09,2;UBERON:0004363,1.86e-09,2;UBERON:0000412,8.15e-07,3;UBERON:0001992,8.15e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0,0,0,0,0.37129905888014,0.331397375727916,0,0.602694528023977,0,0.487932798790507,0,0.204000691244253,0,0.286235987131057,0,0,0.152826811495903,0,0,0,0,0,0,0,0.369754010166788,0.0774672005803016,0,0,0,0,0,0,0,0,0.145398238779565,0.377875943688809,0,0,0,0.309706370895104,0.575384784644301,0.256160706529101,0,0,0,0,0,0.545812300115692,0,0,0,0.639337125799041,0.329851300186716,0,0.426224750532694,0.290209238628584,1.70215567407342,0,0,0,0.217188844705117,0.605399502633369,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0.786021525498329,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0.276350017785848,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0.670700859703636,0,0,0,0.289693037921647,0,0,0,0.221729397462564,0.087834785693126,0,0,0,0.649094787309367,0,0.132957960518865,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0.117434498643765,0,0,0.204154171254893,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0.717558542755448,0,0,0,0,0,0.18611685633159,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0.36497735907583,0,0,1.38134921352481,0,0,0,0,0.241011029883482,0,0.217879444092406,0.237270619111097,0.134831308160164,0,0.38474715694639,0,0,0,0,1.26755034821831,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0.148631162288728,0,0,0,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57656445851882,0,0,0,0.257207374262142,0,0,0.142977993658148,0,0,0,0,0,0,0,0,1.2162378064119,0,2.10833939483032,0.239624855491583,0,1.42636905040718,0.144781306667579,1.64381058040307,0,0,0,0,0,0.254094624222463,0,0.773288812777695,0,0,0,0,0,0.24538298343828,0.500170521059677,0.271265023699736,0,0.356857977594324,0,0,0.300946099727719,0,0,0,0.368738337083406,0,0.391602314925481,0,0,0,0,0,0,0,0,0.306923946576125,0,0.256278298511402,0,0.160853921143607,0,0,0,0.164254312027618,0,0.232420756919918,0.120859449591622,0,0.184161977871793,0,0.182091168006717,0,0,0.0770153371044148,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.183138929636687,0.082509499920588,0,0,0,0.096670718292122,0.462145851343933,0.460511024178389,0,0,0,0.0852266274161009,0.267096106940212,0.165284915360978,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0.274537029736055,0.235624804691373,0,0,0,0,0,0,0,0,1.13008116620243,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0.106824071127473,0,0,0.185803175125719,0,0,0.159426272728822,0,0,0,0,0,0.228234679033192,0.156679895773023,0,0,0.1605880751037,0,0,0,0,0.223676107892416,0,0,0.278406173895242,0,0,0.33307196799782,0,0,0,0.121360521749513,0.111443384277478,0,0,0,0.307160702099232,0,0,0.111308705022906,0.824019371133798,0,0,0,0,0,0,0,0,0.179021174675609,0.511572370226872,0.0986434056369336,0,1.11136990144637,0,0,0,0,0,0.724999575434793,0,0,0,0.689486746482929,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0.063186579628488,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0.0967563312890851,0.146178634172371,0.0821154570532092,0,0,0.225980740780532,0,0,0,0,0,0,0.39961921916426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0.0671834724867263,0.360299883542404,0,0,0.164831716762333,0,0,0.169346664131569,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0.233713309847224,0.554805861502613,0,0.754703705257725,0.889811221596536,0,0.151230923763239,0.15543720058278,0.73927574994817,0,0,0.310525913752519,0.414706207840855,0.265841714557995,0,0,0,0,0,0,0,0,1.20008329398946,0,0,0,0,0.214441591374926,0,0,0,0,0,0.308801447160972,0.219284049578707,0,0.192914038270915,0.506827321959218,0,0.345430341731199,0.303859956177382,0.138258436151731,0.194860308839388,0,0,0.982829546539238,12.288645437686,0,0,0.106691729694141,0,0,0,0,0,0,0,0.157265941855896,0,0,0.212574920101683,0.123935764259002,0,0,0,0,0.352675943690684,0,0.128458450192919,0,0.319267718114302,0.205116364240755,0.252071696221718,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0.157115589916002,0,0,0,0,0,0,0.348724276104376,0,0,0,0,0,0,0.118332000730565,0,0,0,0.31020638566432,0,0,0.098150233615243,0,0,0,0,0,0,0,0.118920090777569,0,0.109940516745429,0.150962843566674,0,0,0.470317296361523,0,0,0.392616934229891,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0.143339583151451,0.157771562193185,0,0,0,0,0,0.432626562123789,0.126166424835079,0.109265571963696,0.126698501011437,0,0,0,0.50141507858475,0,0,0.829169439458779,0.103432995861895,0.213233981900981,0,0,0.0620747142958579,0.112131862580613,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0,0,0,0,0.37129905888014,0.331397375727916,0,0.602694528023977,0,0.487932798790507,0,0.204000691244253,0,0.286235987131057,0,0,0.152826811495903,0,0,0,0,0,0,0,0.369754010166788,0.0774672005803016,0,0,0,0,0,0,0,0,0.145398238779565,0.377875943688809,0,0,0,0.309706370895104,0.575384784644301,0.256160706529101,0,0,0,0,0,0.545812300115692,0,0,0,0.639337125799041,0.329851300186716,0,0.426224750532694,0.290209238628584,1.70215567407342,0,0,0,0.217188844705117,0.605399502633369,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0.786021525498329,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0.276350017785848,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0.670700859703636,0,0,0,0.289693037921647,0,0,0,0.221729397462564,0.087834785693126,0,0,0,0.649094787309367,0,0.132957960518865,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0.117434498643765,0,0,0.204154171254893,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0.717558542755448,0,0,0,0,0,0.18611685633159,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0.36497735907583,0,0,1.38134921352481,0,0,0,0,0.241011029883482,0,0.217879444092406,0.237270619111097,0.134831308160164,0,0.38474715694639,0,0,0,0,1.26755034821831,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0.148631162288728,0,0,0,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57656445851882,0,0,0,0.257207374262142,0,0,0.142977993658148,0,0,0,0,0,0,0,0,1.2162378064119,0,2.10833939483032,0.239624855491583,0,1.42636905040718,0.144781306667579,1.64381058040307,0,0,0,0,0,0.254094624222463,0,0.773288812777695,0,0,0,0,0,0.24538298343828,0.500170521059677,0.271265023699736,0,0.356857977594324,0,0,0.300946099727719,0,0,0,0.368738337083406,0,0.391602314925481,0,0,0,0,0,0,0,0,0.306923946576125,0,0.256278298511402,0,0.160853921143607,0,0,0,0.164254312027618,0,0.232420756919918,0.120859449591622,0,0.184161977871793,0,0.182091168006717,0,0,0.0770153371044148,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.183138929636687,0.082509499920588,0,0,0,0.096670718292122,0.462145851343933,0.460511024178389,0,0,0,0.0852266274161009,0.267096106940212,0.165284915360978,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0.274537029736055,0.235624804691373,0,0,0,0,0,0,0,0,1.13008116620243,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0.106824071127473,0,0,0.185803175125719,0,0,0.159426272728822,0,0,0,0,0,0.228234679033192,0.156679895773023,0,0,0.1605880751037,0,0,0,0,0.223676107892416,0,0,0.278406173895242,0,0,0.33307196799782,0,0,0,0.121360521749513,0.111443384277478,0,0,0,0.307160702099232,0,0,0.111308705022906,0.824019371133798,0,0,0,0,0,0,0,0,0.179021174675609,0.511572370226872,0.0986434056369336,0,1.11136990144637,0,0,0,0,0,0.724999575434793,0,0,0,0.689486746482929,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0.063186579628488,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0.0967563312890851,0.146178634172371,0.0821154570532092,0,0,0.225980740780532,0,0,0,0,0,0,0.39961921916426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0.0671834724867263,0.360299883542404,0,0,0.164831716762333,0,0,0.169346664131569,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0.233713309847224,0.554805861502613,0,0.754703705257725,0.889811221596536,0,0.151230923763239,0.15543720058278,0.73927574994817,0,0,0.310525913752519,0.414706207840855,0.265841714557995,0,0,0,0,0,0,0,0,1.20008329398946,0,0,0,0,0.214441591374926,0,0,0,0,0,0.308801447160972,0.219284049578707,0,0.192914038270915,0.506827321959218,0,0.345430341731199,0.303859956177382,0.138258436151731,0.194860308839388,0,0,0.982829546539238,12.288645437686,0,0,0.106691729694141,0,0,0,0,0,0,0,0.157265941855896,0,0,0.212574920101683,0.123935764259002,0,0,0,0,0.352675943690684,0,0.128458450192919,0,0.319267718114302,0.205116364240755,0.252071696221718,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0.157115589916002,0,0,0,0,0,0,0.348724276104376,0,0,0,0,0,0,0.118332000730565,0,0,0,0.31020638566432,0,0,0.098150233615243,0,0,0,0,0,0,0,0.118920090777569,0,0.109940516745429,0.150962843566674,0,0,0.470317296361523,0,0,0.392616934229891,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0.143339583151451,0.157771562193185,0,0,0,0,0,0.432626562123789,0.126166424835079,0.109265571963696,0.126698501011437,0,0,0,0.50141507858475,0,0,0.829169439458779,0.103432995861895,0.213233981900981,0,0,0.0620747142958579,0.112131862580613,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p17@CDK5RAP2 | |||
}} | }} |
Latest revision as of 19:09, 24 September 2015
Short description: | p17@CDK5RAP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_CDK5RAP2_5end |
Coexpression cluster: | C125_mucinous_alveolar_mesothelioma_Smooth_lung_CD14_Nucleus |
Association with transcript: | 193bp_to_ENST00000474262_5end |
EntrezGene: | CDK5RAP2 |
HGNC: | 18672 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mucus secreting cell | 2.66e-18 | 1 |
multinucleate cell | 6.23e-18 | 1 |
myotube | 6.23e-18 | 1 |
skeletal muscle myoblast | 1.33e-17 | 4 |
smooth muscle cell of the pulmonary artery | 1.44e-17 | 1 |
macrophage | 4.81e-12 | 6 |
seromucus secreting cell | 7.98e-10 | 2 |
hair follicle dermal papilla cell | 8.15e-07 | 3 |
stem cell of epidermis | 8.15e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
stroma of bone marrow | 1.70e-17 | 1 |
mixed ectoderm/mesoderm/endoderm-derived structure | 1.86e-09 | 2 |
developing epithelial placode | 1.86e-09 | 2 |
respiratory system arterial blood vessel | 1.86e-09 | 2 |
respiratory system blood vessel | 1.86e-09 | 2 |
respiratory system artery | 1.86e-09 | 2 |
head blood vessel | 1.86e-09 | 2 |
pulmonary artery | 1.86e-09 | 2 |
pulmonary vascular system | 1.86e-09 | 2 |
pharyngeal vasculature | 1.86e-09 | 2 |
truncus arteriosus | 1.86e-09 | 2 |
aortic sac | 1.86e-09 | 2 |
pharyngeal arch artery | 1.86e-09 | 2 |
dermal papilla | 8.15e-07 | 3 |
papillary layer of dermis | 8.15e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 2.66e-18 | 1 |