FFCP PHASE1:Hg19::chr20:45313122..45313125,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64849 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=14430 | |||
|TSSclassifier=strong | |||
|UniProt=F6WI18,Q8WWT9 | |||
|association_with_transcript=0bp_to_NM_001011554,NM_001193340_5end | |||
|cluster_id=chr20:45313122..45313125,- | |||
|description=CAGE_peak_2_at_SLC13A3_5end | |||
|id=chr20:45313122..45313125,- | |||
|ontology_enrichment_celltype=CL:0002321!1.74e-16!248;CL:0000055!2.02e-16!180;CL:0000220!9.17e-16!246;CL:0000183!1.11e-14!59;CL:0000187!5.68e-14!54;CL:0000393!1.19e-13!60;CL:0000211!1.19e-13!60;CL:0000680!2.48e-13!57;CL:0000056!2.48e-13!57;CL:0000355!2.48e-13!57;CL:0000192!4.03e-12!42;CL:0000514!4.03e-12!42;CL:0000359!6.79e-08!32 | |||
|ontology_enrichment_celltype_v019=CL:0000192;2.40e-09;43!CL:0000187;1.07e-08;55!CL:0000393;6.23e-08;61!CL:0000211;6.23e-08;61!CL:0000359;9.33e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.80e-17,250;CL:0000187,1.33e-15,55;CL:0000393,1.91e-15,61;CL:0000211,1.91e-15,61;CL:0000680,2.99e-14,58;CL:0000056,2.99e-14,58;CL:0000355,2.99e-14,58;CL:0000192,1.70e-13,43;CL:0000514,1.70e-13,43;CL:0000359,2.07e-08,32 | |||
|ontology_enrichment_development_v019=CL:0000514;2.40e-09;43!CL:0000355;9.07e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!6.15e-16!82;UBERON:0000914!5.07e-15!83;UBERON:0002329!5.07e-15!83;UBERON:0003077!5.07e-15!83;UBERON:0003059!5.07e-15!83;UBERON:0007282!5.07e-15!83;UBERON:0009618!5.07e-15!83;UBERON:0007285!5.07e-15!83;UBERON:0005256!5.55e-15!143;UBERON:0000475!1.43e-14!365;UBERON:0000481!6.96e-14!347;UBERON:0002100!1.32e-13!216;UBERON:0004290!2.00e-13!70;UBERON:0001134!1.18e-12!61;UBERON:0002036!1.18e-12!61;UBERON:0003082!1.18e-12!61;UBERON:0003104!1.21e-12!238;UBERON:0009142!1.21e-12!238;UBERON:0002385!2.44e-12!63;UBERON:0001015!2.44e-12!63;UBERON:0000383!2.44e-12!63;UBERON:0000119!1.77e-11!312;UBERON:0000483!3.06e-11!309;UBERON:0003102!1.08e-07!95;UBERON:0000468!2.17e-07!659;UBERON:0000466!4.04e-07!126;UBERON:0004119!4.50e-07!169;UBERON:0000925!4.50e-07!169;UBERON:0006595!4.50e-07!169;UBERON:0000464!9.23e-07!104;UBERON:0000490!9.82e-07!138 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,1.43e-16,83;UBERON:0002329,8.94e-14,71;UBERON:0003059,8.94e-14,71;UBERON:0007282,8.94e-14,71;UBERON:0004290,8.94e-14,71;UBERON:0009618,8.94e-14,71;UBERON:0007503,1.38e-13,78;UBERON:0003077,2.94e-13,72;UBERON:0007285,2.94e-13,72;UBERON:0007524,3.12e-13,73;UBERON:0003104,4.73e-13,160;UBERON:0009142,4.73e-13,160;UBERON:0001134,6.48e-13,62;UBERON:0002036,6.48e-13,62;UBERON:0003082,6.48e-13,62;UBERON:0002100,1.65e-12,199;UBERON:0005256,2.22e-12,122;UBERON:0002385,2.46e-12,64;UBERON:0001015,2.46e-12,64;UBERON:0000383,2.46e-12,64;UBERON:0000119,3.04e-08,309;UBERON:0000483,4.94e-08,306;UBERON:0003102,1.04e-07,99;UBERON:0000490,1.56e-07,148;UBERON:0004119,2.94e-07,160;UBERON:0000925,2.94e-07,160;UBERON:0006595,2.94e-07,160 | |||
|phase1_expression=2.54349730978779,1.49870366723688,2.11431606143957,4.00293193412522,4.46961094427288,1.74467704820074,2.53299878168311,6.31719873426831,1.82829939739887,7.37201809504527,4.88460817580699,2.83973783769224,1.31883489114227,3.21792517696121,4.97096063591874,4.03395087871065,3.61616716814386,5.11217063271161,1.95173119516203,3.44738962615006,2.85600967741954,2.5076377718247,4.57977579409691,3.42186062682211,3.13856598987007,0,0,0,0,0,0,1.83884244895785,7.228942050678,4.43704812200145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,3.35350429851818,2.04580098949649,3.2529523714611,1.50401373190767,0.579386075843295,0,2.91980922181582,2.17430079477356,2.66075276955077,2.28370442802128,0.982343066232845,8.74308691902101,7.41568885568859,0,0,0.132957960518865,0,0,0,0.39752481473341,0,0,0,0,0,0.208994966536811,0,0.35576626268671,0,0,0,0,0,0,0.446498641420399,0.673588117878509,0.675668882899933,0,0.949265659568129,0,0,0,12.6467275121335,1.98788780678127,3.79891534993739,1.98613771219828,9.46560848471085,2.12801029319014,2.24271040056923,1.06748995729705,1.97334038733728,0.933633106199299,1.34710672069688,2.94231425604226,5.44886739521753,1.72852777344,4.21778577300834,5.30672130611545,1.1409436430889,4.03511437489863,1.996386476944,2.75184005425824,2.24721290723598,8.37032102145062,2.21101771161182,6.50952421407322,1.18800285728205,0.741800787835671,3.64064544775211,1.43723628363248,2.35670559535693,2.00189631795143,5.54128230968366,2.19488810440419,0.919463387397059,1.50238058906597,0.340296549480063,2.33206526395521,0.213557388818567,1.48352330811693,0.600182192168805,2.37020817248409,2.83404594050192,1.30281799432113,2.86919764810153,2.72823614451356,3.5340728394176,1.28869858099219,2.58633690910099,3.19508633264953,1.5112814734146,2.54340888465731,2.89891279744945,3.00020732649918,3.15485054927904,8.66013313520127,7.1566074893602,2.78865462886844,5.28671380578389,4.03713361401005,1.09493207722749,3.12899064659632,1.28648187638577,2.76269842704961,3.25057549622385,3.60939740834793,0,0,0,0,0,0,0,0,0,2.21446636387394,2.80483547606892,4.115740113314,5.88034845542168,10.1404027857465,12.7767538168091,12.4065880403095,0,0.245976877086227,2.23038153388083,7.68251997860379,7.86812272803337,4.32274581370013,10.9254365287065,4.56131627434455,5.19967392639789,0,1.73895607462615,2.7003999674239,0.288732895522148,0,0,0,0.858486162094873,0,0,0,15.9347517777521,4.03157107677263,4.67857820899875,3.49278238541108,1.74380363108377,0.383382679165211,0,0,0,0,0.12624243342638,0.888970520090367,3.81988425558278,1.17217447210047,5.13217338068116,0.822619941626588,0,0.857479297891735,1.90622843387113,3.48768055066624,1.39342743059805,3.36106460970222,3.57656445851882,3.381211010224,3.72313363218819,5.2003718455683,4.37252536245642,4.25547396069835,2.66422179016099,6.86294369559108,11.3950537132203,9.87888404136923,4.23457039581856,7.81862287233601,7.91951872933429,3.91871190177462,4.35766729300147,3.09916272664377,0,0,0,1.19812427745791,1.14861935834114,0,1.88215698667853,0.410952645100767,0.537182889719687,0,0,0,0,1.77866236955724,1.30139853857622,0,1.17261385734044,0,0,0,0,4.66227668532732,1.00034104211935,4.06897535549603,4.15941723061614,2.49800584316026,0.788512075169673,2.34282829985426,2.40756879782175,4.5481500811197,1.03473071292505,3.32112799267718,2.02806085395873,4.25729710893606,5.286631251494,2.05886054286514,0,0,0,2.42502057157008,1.66435439510497,8.46692821323105,2.48107807818777,3.6830873589135,1.96462066103151,2.56278298511402,2.55853624533352,2.0911009748669,1.48418066444991,4.31787142647436,2.30830242907065,4.92762936082855,1.55776328755086,3.60252173225874,0,2.6065841139427,10.9576376833717,3.90369123759663,6.55528204824181,3.40923478894503,4.06079651616671,3.77375151811632,4.70609861506113,0,2.21658420675039,0,0.510281115829547,1.0795795805107,1.54227252690289,4.33514300070165,5.01689773854853,2.29388645740534,4.15538004464362,4.02974558499921,0,0,8.97575437907362,4.92021968549559,5.20605431462885,1.03041011647722,0,0,10.3367796839311,11.0510241826209,1.6068392984416,3.38347514022427,4.77550713055398,7.06116903740196,3.85942402956686,10.3123435073543,7.97591816528257,2.64202544989913,3.29418531892928,6.28082678371717,4.22818148203234,20.6732594241226,6.37294019389965,2.78907329578371,7.24068397710472,5.5762981612848,2.7723022215848,2.66153015158511,2.60979897622522,1.29726953372744,1.86062352764589,4.46590043231601,2.53103539774981,7.05331717518152,8.44462711327402,7.70290178461057,1.90921948755562,3.13979456079692,5.93579110024939,6.03981465419321,6.9509317383955,5.25674452090622,4.75530963519025,5.05510147486777,7.31450608634386,5.60541026151954,3.16950440270266,3.27599787379166,5.09059555033366,2.26016233240486,4.41092274836899,7.96126770289464,4.82295973779139,17.3632660280006,13.1178950409327,2.84074527747786,2.16876448669825,3.94373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| |||
|short_description=p2@SLC13A3 | |||
}} |
Latest revision as of 15:10, 16 September 2015
Short description: | p2@SLC13A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SLC13A3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_001011554, NM_001193340_5end |
EntrezGene: | SLC13A3 |
HGNC: | 14430 |
UniProt: | F6WI18Q8WWT9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.80e-17 | 250 |
muscle cell | 1.33e-15 | 55 |
electrically responsive cell | 1.91e-15 | 61 |
electrically active cell | 1.91e-15 | 61 |
muscle precursor cell | 2.99e-14 | 58 |
myoblast | 2.99e-14 | 58 |
multi-potent skeletal muscle stem cell | 2.99e-14 | 58 |
smooth muscle cell | 1.70e-13 | 43 |
smooth muscle myoblast | 1.70e-13 | 43 |
vascular associated smooth muscle cell | 2.07e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 1.43e-16 | 83 |
somite | 8.94e-14 | 71 |
presomitic mesoderm | 8.94e-14 | 71 |
presumptive segmental plate | 8.94e-14 | 71 |
dermomyotome | 8.94e-14 | 71 |
trunk paraxial mesoderm | 8.94e-14 | 71 |
epithelial vesicle | 1.38e-13 | 78 |
paraxial mesoderm | 2.94e-13 | 72 |
presumptive paraxial mesoderm | 2.94e-13 | 72 |
dense mesenchyme tissue | 3.12e-13 | 73 |
mesenchyme | 4.73e-13 | 160 |
entire embryonic mesenchyme | 4.73e-13 | 160 |
skeletal muscle tissue | 6.48e-13 | 62 |
striated muscle tissue | 6.48e-13 | 62 |
myotome | 6.48e-13 | 62 |
trunk | 1.65e-12 | 199 |
trunk mesenchyme | 2.22e-12 | 122 |
muscle tissue | 2.46e-12 | 64 |
musculature | 2.46e-12 | 64 |
musculature of body | 2.46e-12 | 64 |
cell layer | 3.04e-08 | 309 |
epithelium | 4.94e-08 | 306 |
surface structure | 1.04e-07 | 99 |
unilaminar epithelium | 1.56e-07 | 148 |
endoderm-derived structure | 2.94e-07 | 160 |
endoderm | 2.94e-07 | 160 |
presumptive endoderm | 2.94e-07 | 160 |