FFCP PHASE1:Hg19::chr20:44519987..44519999,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5476 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9251 | |||
|TSSclassifier=strong | |||
|UniProt=Q5JZH0 | |||
|association_with_transcript=6bp_to_ENST00000419493_5end | |||
|cluster_id=chr20:44519987..44519999,+ | |||
|coexpression_cluster_id=C1750 | |||
|description=CAGE_peak_3_at_CTSA_5end | |||
|id=chr20:44519987..44519999,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.84e-14!180;CL:0000048!1.75e-10!430;CL:0002371!2.42e-10!591;CL:0000144!5.37e-10!625;CL:0000057!1.44e-09!75;CL:0000723!3.53e-09!436;CL:0000222!7.57e-09!119;CL:0000548!8.27e-09!679;CL:0000004!8.27e-09!679;CL:0000255!8.27e-09!679;CL:0002194!1.20e-08!63;CL:0000576!1.20e-08!63;CL:0000040!1.20e-08!63;CL:0000559!1.20e-08!63;CL:0000012!1.43e-08!682;CL:0000034!4.49e-08!444;CL:0002320!7.04e-08!365;CL:0002009!1.96e-07!65;CL:0000183!5.80e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000134;1.92e-07;55!CL:0000473;7.96e-07;39!CL:0000234;7.96e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,2.28e-10,427;CL:0000057,6.23e-10,76;CL:0000222,2.22e-09,121;CL:0000723,4.47e-09,433;CL:0002194,3.97e-08,59;CL:0000576,3.97e-08,59;CL:0000040,3.97e-08,59;CL:0000559,3.97e-08,59;CL:0000034,5.88e-08,441;CL:0002320,1.46e-07,361;CL:0002009,5.44e-07,61;CL:0000473,8.20e-07,48;CL:0000234,8.20e-07,48 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!2.92e-14!448;UBERON:0004120!2.92e-14!448;UBERON:0006603!2.92e-14!448;UBERON:0002204!5.40e-12!167;UBERON:0003081!8.60e-12!216;UBERON:0000468!1.36e-10!659;UBERON:0000480!7.95e-10!626;UBERON:0000467!1.45e-09!625;UBERON:0002405!6.78e-09!115;UBERON:0002384!7.31e-08!375;UBERON:0000062!9.59e-08!511;UBERON:0003914!1.40e-07!118;UBERON:0004765!5.15e-07!101;UBERON:0001434!5.15e-07!101;UBERON:0001474!5.51e-07!86;UBERON:0002371!8.04e-07!80 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,6.17e-15,315;UBERON:0004120,6.17e-15,315;UBERON:0006603,6.17e-15,315;UBERON:0002204,1.21e-12,167;UBERON:0003081,9.62e-12,203;UBERON:0002384,1.51e-07,371;UBERON:0003914,2.47e-07,117;UBERON:0001434,2.59e-07,100;UBERON:0004765,6.55e-07,90 | |||
|phase1_expression=5.81370813665781,13.274232481241,7.04772020479856,24.0175916047513,27.7115878544918,16.574431957907,15.1979926900986,12.0026775951098,16.4546945765898,5.89761447603621,13.9560233594486,5.46103430325431,7.12170841216825,9.15871011904345,28.1687769368728,16.1358035148426,16.8754467846714,8.76372108464848,15.6138495612962,8.49535300729837,17.1360580645173,10.9709152517331,3.43483184557268,2.6006140763848,2.76193807108566,0.993374274723366,1.14940825229924,0.550975469195755,4.32700704533794,3.0706351847777,12.3852898652861,2.75826367343678,3.614471025339,0.369754010166788,0.542270404062111,1.27952309238679,1.17440175733939,5.53995408531877,5.81578897663411,8.24641308720237,27.0937723830308,31.417685603841,26.272707898687,11.9226555799243,8.69114670484262,7.5201058968223,9.76201955003875,7.40102198439286,11.1494293522237,18.4123131086176,8.45330331546032,10.4052181150977,9.65287906062532,8.39130088658974,9.47985406160392,12.4239944098119,8.18718450173537,7.41587498668779,17.1406979727705,3.85114832491312,8.95071976118658,6.92687730392104,8.17800996248691,5.11469700639233,11.8985787837719,10.2129340444405,9.34233373493363,14.3211739196344,7.30076085788282,13.031330682307,6.05399502633369,5.89244217580104,2.21523671208619,3.80259515361495,5.95292039902122,6.0801007197429,7.97533281140115,11.563620748796,9.16135844173357,3.42015292489498,2.58591680358817,2.73996230646951,0,1.63841583378639,0.889509253863555,1.70692089026603,0,0,1.32208974556972,0.954053754535364,0.569212969109448,0.587237189370939,0.382273228125229,1.32171328579026,2.80254281490768,6.05783394982677,1.57367816091066,0.786021525498329,1.23360899399706,2.17342444007882,1.30368906653436,1.4203434172042,0,3.11949279278486,6.18672405697158,2.65840673500345,2.16643091012012,4.86747014957566,2.60118695119756,1.64437904603676,0.276350017785848,0.579606171470105,0.444859689486181,0.535081656179426,1.04535523804977,2.49280553934646,0.766440987203842,2.40539211837841,2.02415753615602,1.27426165729639,0.651083453856419,2.85135613334512,3.312652619711,2.8157054453972,0,0.710331756132051,3.28451198768419,1.00803371612366,1.60464117470104,0.868946423296794,17.0664806419773,13.4140171940727,19.3072468383731,15.9033227049209,6.51739283826656,15.3537310098473,6.36228757640879,8.27279279514481,3.49778823507051,3.54767035940102,5.97276542713257,12.5085017100316,3.27865759463288,4.07862887062872,25.63924409872,17.587103467226,23.1346851302825,0.953962497221368,1.71598473234038,1.48583000531826,1.78886166630035,13.763753521698,5.9013885273291,1.13061588384802,22.6529695553349,6.32771496462155,4.59788926380983,13.4376714768051,15.6537155582153,9.37217715741077,9.26507429351038,0,14.1555993377938,7.35326160691737,10.5318453224629,2.67899184852239,4.4905874525234,1.68917220724983,7.66583187329416,2.84779697870439,2.93122790288652,0,0,3.92484646928281,10.4364109856017,10.257071444831,29.659656502161,115.021484920274,18.0880874921162,25.7911696065461,8.5399196583764,32.5601163910651,9.33633106199299,8.08264032418128,8.00963325255948,17.557461606812,14.98057403648,4.92075006850973,24.9728061464256,4.56377457235559,10.4614076386261,3.87533845524424,1.61872944368132,3.08991774744947,8.77862936396041,2.45668634623536,10.4359038987523,19.0080457165129,13.3524141810421,7.28129089550421,7.18618141816238,2.18836948140286,2.00189631795143,7.20366700258876,8.34057479673592,7.04921930337745,26.2916603086544,5.89847352432109,14.1717812194201,13.0270007179326,10.8085269591377,39.3119335870567,14.0151439764277,27.5675377848823,12.4698293742165,27.8480948198089,12.3744996554722,19.942268165285,3.49789614840738,42.997851113804,41.8911319169605,10.075209822764,8.13890843090341,4.83152132908242,1.90922284413584,4.01526433544605,1.82960559194393,0.927708378250397,2.20768491452085,1.86589899027667,2.52320850875628,1.09493207722749,3.12899064659632,15.4377825166292,0,18.1103491932472,31.7626971934618,3.90412440131485,3.70886318171824,5.78426471720357,5.73528658208448,6.53638332277218,6.40630671599961,6.20224017536756,4.70931516300831,8.84918460976698,26.5735963664873,15.426595118379,13.5819423739362,19.1111324801205,3.80265104465493,2.94848165003288,23.0408063605748,0.441463099414651,7.74827162821615,12.0097467208968,1.09750285408626,2.24803506515239,1.60846355858609,1.38882667737794,3.9096996637239,14.5590869939141,5.77325368101093,11.5930404975077,16.437217193015,5.77465791044295,4.62985512576611,6.08813287150714,9.4824527755113,8.58486162094873,36.1938998948474,22.9324179836453,27.7940273479922,0.93733833986777,3.86358894857377,1.41775097242386,1.52249488594842,1.16253575405585,4.60059214998253,3.4486426652716,5.37095447480679,0.621984346622316,0,1.00993946741104,15.6839798901658,14.8975485967728,18.7547915536075,10.2643467613623,12.5449541098055,6.9078903304101,22.0086353125545,3.36393253036082,23.5418437169971,1.10007428731425,15.12479074366,28.6125156681506,4.22651376278,24.2003686092232,28.0820079660688,5.14414748524284,5.67396528093113,6.66055447540248,4.71827379071887,28.216323480355,6.58592269424615,7.16619605446217,9.24019066730619,7.12756685640086,13.5647719676814,6.97226766880235,9.49743416229542,86.3528842552452,101.958189560722,52.7084848707579,11.9812427745791,29.8641033168696,11.4109524032575,7.52862794671412,12.9450083206742,10.5645968311538,5.71634234366989,2.36436912242313,0.646882724578552,2.05348858047597,0.254094624222463,0,0.773288812777695,4.18790663335872,0.637938751653163,2.99602809578873,0,2.90090859405225,24.2929153603897,8.50289885801451,21.4299368722791,16.221727199403,5.88815663030634,9.46214490203608,5.85707074963566,5.71797589482666,18.1926003244788,16.5556914068008,9.29915837949611,5.34670588770939,14.5095636161698,60.5025576559868,62.1089597097649,0.413536052245775,2.80428461064202,2.13455115606889,3.63753085735511,3.32870879020994,6.95497674658265,4.21783273291921,19.7965945541601,11.7877239661891,7.68834895534206,6.65219423786715,14.3159989817811,44.5254199334973,1.85051632563187,9.23320971628261,2.62806899244189,1.03850885836724,7.90230573527723,3.2632051389738,1.80455823272956,3.49907757956406,11.2518159201315,10.925470080403,34.7479699642474,10.3775910968705,1.30926073077505,3.13739907670742,8.76835347919564,1.79437769117889,36.3946829026869,11.7364656640796,4.53423423814493,13.880452742126,8.67028600140329,18.0608318587747,2.80363900349542,6.64860807142979,4.25362033972139,3.06963827304308,1.0457418040996,15.8999077572161,21.3209519704809,1.95227036798582,3.81251743096572,6.59300146692073,4.20798449594999,3.44559322797703,2.60024098414608,19.2820715812991,2.22342652071881,5.69979883324184,5.98664331431905,3.44591431211326,5.37101224341368,5.22060098091223,4.60223788046945,3.82837753280971,0.826424576804891,2.30628080838127,2.55225424989168,1.6185244936888,4.64845549297286,75.240150892523,4.8792608911242,7.08477234405004,5.32306030317022,2.60979897622522,7.78361720236464,4.00749682877575,9.67611760335135,14.8698329617801,12.7722229928963,19.7041299309727,17.5454985093907,9.22789418985217,8.63443504219153,6.83515338816596,11.5305552489143,7.65780615246962,8.69384670765259,1.58510321173008,7.16139375606268,14.1413784335981,15.5976633364022,3.16950440270266,20.3384867997899,18.8069224498438,14.6910551606316,1.65409603063837,3.98063385144732,11.3997230165978,22.5722458364008,10.4943160327461,6.08731130888112,4.957175969596,6.47899885824155,6.59692220138637,11.4951377985352,8.56010523555001,4.61189383291777,33.3550063770309,37.5396177974288,5.69209760648573,4.89908608342976,0.962221127255121,1.34060455107157,0,6.68420985515132,1.72202149068492,3.36942951335251,3.54744122829341,2.75668080248351,28.9245137262337,9.94028369285088,15.9501212408766,2.62054953003568,1.64544909234478,16.2118327798179,17.2810059916197,7.9312517629427,2.7774258493143,1.92495971052672,3.43056302373444,1.11481905075431,0.721346064882224,0.782560276832555,1.27541018183058,2.19537308576098,5.55365573383863,3.17510374085824,1.94773164164733,14.6014532618999,3.19528550646469,4.54371697741767,17.5444133963047,0.846458889008016,1.1241165257259,1.41259795033733,2.98092366383228,0.343505344755765,3.99412993600995,5.36822658941798,3.17013369252626,5.86164286206121,3.34087408674291,1.23087398947712,3.51592382018778,1.33228787199128,2.81974010175699,6.36277837387947,1.61158997199083,6.79618921797275,4.56917875537661,5.68272293612826,7.40107902686839,10.690728509975,7.37185685038157,3.97659059106519,1.26602474769461,8.12553546667213,5.10892010102955,1.05562704063997,3.38721580026819,5.52567831062295,1.51159648712566,2.86352311006033,1.10776324914963,6.22079175323615,3.6846023970404,3.9384658428634,3.06943422136123,1.87422470710174,9.57932369387759,8.89095921157095,7.75466196876175,2.87581104301739,1.99613798001194,7.29197731038653,1.48681999993533,8.69999490521752,9.55864965598197,5.33932665614809,7.8007934983419,0,1.16641845353302,1.38899995946634,7.08593108651071,2.05013945663194,4.5774520895125,1.65868889896837,2.95547618953547,1.75508317723178,1.19832309870889,2.78847488557207,1.30815439456455,47.0580690648115,5.30296980092538,0.538545866458633,2.82483166997221,12.7600463892768,8.97656415338251,6.92945208824225,2.04386596391473,5.33732871743084,6.31604391220594,0.902382642468723,0.980312671588698,1.00692952185506,0.37950746544837,2.54298526368606,1.68798451622422,4.08082020397869,3.8165329287164,1.29833183845255,14.9289289661776,5.13053874119367,31.1625373916149,0.296521128680622,1.35920332841153,1.14864144456001,2.96564985114979,0.802577647298789,2.81117334870407,0.547364367646998,1.36965233252463,13.5957012539092,1.97292201424695,15.7287930863263,0.30607276163049,4.17031425548021,0.60129367765797,0.829505531177977,5.98188485436467,7.61281498513647,3.13932918407225,22.6997616568622,2.27687636823834,2.35746944122336,2.2562765983567,4.31166548623262,6.9647365264322,3.14508002835654,15.8227149873887,6.4826741963687,6.79730648901526,8.29366116237413,2.32773639572207,3.97152570111751,4.74559555639118,6.44097045839729,6.75629679790165,2.02594547058812,2.34661659281764,7.21429382263803,4.90941887900511,10.9895285270172,5.47543585185603,5.03961023130029,3.77508995296322,2.16082196982225,5.21860649374817,2.35694034616795,4.21303038828204,5.33474516192899,4.89591444654345,9.2464188768486,1.80126086612937,2.19048606227189,7.66479528401834,6.44648162129936,1.31443677139657,1.11712960508902,2.7499250881402,0.717873024576814,6.7890860169657,3.86303443322914,4.46342914883745,3.29199015184959,15.8531948758658,2.32991899054908,14.1809728153003,16.812835109758,14.4917619286498,4.82294659422269,1.27009998098677,3.18091875923721,0.681017030557878,1.44677833618517,2.06309154895851,2.07720169014593,0.2249738915515,0,1.94398581305679,21.8032546939523,21.1199295561851,10.8580997439446,4.11841312425685,8.96436696664224,1.53532157855556,8.5763439164804,9.93137955548147,4.5768336777855,14.1179896455965,4.32110745600634,9.47103344317287,7.18381149374925,4.18671855821629,19.2538464617527,8.04515849792892,5.8620893471233,11.9256200020999,2.06852730178481,2.11572162788304,7.01456035325751,4.9337051562167,6.51403216662938,1.25763444079733,4.55662960881915,11.9079845234868,15.0184840242438,0.487170393523584,0.638341257770182,2.1760712134779,2.506898940227,1.53172788381731,1.96723578425883,1.88464915500281,5.31640907980192,1.09823638411767,0.876336514945499,5.16068276121064,2.10765197920019,2.54595252059672,0.553394539744923,5.12419672644637,43.8265949695362,5.42384133735438,5.41111385305795,0.468334905806882,1.59413131471908,12.3881486396105,14.4902252105279,9.98650550704704,35.6077649917168,58.3637532065974,16.9064132103342,34.3260102595385,39.4712711022054,17.5644036658542,16.4119216488494,12.4251478387688,8.09645601894488,12.7315624638533,9.53824278033968,19.9381285918496,13.0436265452933,18.0309130796662,15.6130136989206,6.10306099806992,25.8225096067634,8.91507623452654,13.4569790364763,9.15620544006817,0.400027764663154,16.4829938487741,18.5212218821256,6.30924491143255,12.3276691460674,3.64550705337374,2.87093721161733,9.97506072253998,4.86197196080051,7.09736443068756,9.13353089515586,1.85280868296583,12.718474875565,3.88716121080938,5.59450710985653,7.09558250742905,5.12483037175893,3.10887307558079,6.07719912354764,1.93561810612423,2.33832370607266,2.5244319659539,2.45348091383766,7.53502652346749,20.8906972440661,3.16968185037941,2.59983614611409,3.73421053929493,12.3994785355787,1.13503190713367,19.8834426271988,3.35710818526667,2.48830904013189,0.76736622782191,2.04867141653695,5.81883984866817,1.09209638192014,3.22491806912648,1.2754495206101,2.35477952092104,2.23457967189298,9.54013051960256,0.94634094001504,2.40171224485641,17.9864731282249,4.8999276376512,2.63339822895484,5.6678630530234,3.19267718114303,2.87162909937057,1.51243017733031,3.52701987567511,2.42213468447777,5.71077681036618,8.14626063558513,0.707818340086442,4.21885776599862,5.66075764136657,6.48349562294184,3.4517996303005,10.9403922163951,5.26472298444801,18.1534561833168,7.03362610109783,0.785720083444267,6.05956094787358,2.21784129325568,1.95858995393344,3.90539049306924,0.620060389503552,2.91712726891971,0,1.64477330057155,1.98484471355718,1.05522746615772,10.093231783528,24.6422844504012,5.38053955550118,4.24875922965642,2.27662191351298,5.14473746943305,1.49804183822513,20.9215371513651,1.01954599465248,3.09132035745391,4.96414131712666,7.23004112298449,3.21821680687107,1.25692471932802,5.0448989396482,2.73947616152849,4.96633459802829,7.16627531830575,7.71946677107889,1.10609528212909,3.95220846251626,0.521574816907738,13.6290932004143,4.14432328326074,1.19502933965765,9.67763526539729,2.58136415292167,9.58489205917579,7.92484664260167,0,2.2910686854405,13.6490809692301,0.955538938977433,17.8968690876468,5.39826284883836,6.70548587402482,0,1.53994210284371,4.6392577253528,3.88568794447312,3.50909195193158,1.59160620129095,1.78380136166353,0.5647304101948,0.659643100472575,5.43466236840025,7.48589333647063,54.4213305654854,0.940634592723046,4.16752146981639,3.06379511232114,2.35570160537934,1.48523200163543,2.9585900930838,11.7249709134594,6.10895466869048,6.38133090938414,2.79835236589801,2.32120120187355,2.82315897372553,8.82655033580851,2.19100916473955,1.83491713361816,1.72007499781742,4.1020606170228,2.51568513706384,0.872701380680755,3.7031878836078,26.4116462898393,67.0154661515556,19.0355687334467,0.504665699340316,1.31118686356435,2.15387451719443,1.32585478664576,2.40495664739004,5.97316846976492,0.250707539292375,3.56159881625725,1.87574891109325,4.1458471972939,1.55149493792843,2.13233981900981,2.14257988317366,1.0334225573761,2.79336214331361,8.52202155612662,2.92776928079559,1.61693751166575,2.17716747896961,4.44903291410865,2.62673006756891,3.29922144806311,0.99798106963804,2.27929152110729,3.94891179747547,11.5843369372164,36.0199060447413,4.69281884806909,2.93379466038879,3.25516942652591,2.66302709674205,3.01910690386539,3.8468219076388 | |||
|short_description=p3@CTSA | |||
}} |
Latest revision as of 13:00, 16 September 2015
Short description: | p3@CTSA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CTSA_5end |
Coexpression cluster: | C1750_Monocytederived_Fibroblast_Mesenchymal_Smooth_Macrophage_CD14_Pericytes |
Association with transcript: | 6bp_to_ENST00000419493_5end |
EntrezGene: | CTSA |
HGNC: | 9251 |
UniProt: | Q5JZH0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 2.28e-10 | 427 |
fibroblast | 6.23e-10 | 76 |
mesodermal cell | 2.22e-09 | 121 |
somatic stem cell | 4.47e-09 | 433 |
monopoietic cell | 3.97e-08 | 59 |
monocyte | 3.97e-08 | 59 |
monoblast | 3.97e-08 | 59 |
promonocyte | 3.97e-08 | 59 |
stem cell | 5.88e-08 | 441 |
connective tissue cell | 1.46e-07 | 361 |
macrophage dendritic cell progenitor | 5.44e-07 | 61 |
defensive cell | 8.20e-07 | 48 |
phagocyte | 8.20e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 6.17e-15 | 315 |
mesoderm-derived structure | 6.17e-15 | 315 |
presumptive mesoderm | 6.17e-15 | 315 |
musculoskeletal system | 1.21e-12 | 167 |
lateral plate mesoderm | 9.62e-12 | 203 |
connective tissue | 1.51e-07 | 371 |
epithelial tube | 2.47e-07 | 117 |
skeletal system | 2.59e-07 | 100 |
skeletal element | 6.55e-07 | 90 |