FFCP PHASE1:Hg19::chr1:94535957..94535970,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr1:94535957..94535970,+ | |||
|description=CAGE_peak_at_chr1:94535957..94535970,+ | |||
|id=chr1:94535957..94535970,+ | |||
|ontology_enrichment_celltype=CL:0002078!5.49e-15!44;CL:0000115!5.54e-15!35;CL:0002139!4.38e-14!24;CL:0000213!7.04e-14!57;CL:0000215!7.04e-14!57;CL:0002144!8.29e-11!3;CL:0000071!2.14e-10!18;CL:0002546!2.14e-10!18;CL:0002549!7.60e-08!2;CL:0002575!1.20e-07!2;CL:0000066!6.56e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0000167;1.12e-17;1!CL:0000164;1.12e-17;1!CL:0000502;1.12e-17;1!CL:0000172;1.12e-17;1!CL:0000173;1.12e-17;1!CL:0002262;1.64e-09;2!CL:0002549;1.64e-09;2!CL:1000398;1.64e-09;2!CL:0000322;5.80e-07;3!CL:0002144;9.37e-07;3!CL:0002590;9.37e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000167,8.72e-18,1;CL:0000164,8.72e-18,1;CL:0000502,8.72e-18,1;CL:0000172,8.72e-18,1;CL:0000173,8.72e-18,1;CL:0002351,8.72e-18,1;CL:0002549,1.33e-09,2;CL:0002262,1.71e-09,2;CL:1000398,1.71e-09,2;CL:0000322,5.80e-07,3;CL:0002144,9.12e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002351;1.12e-17;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4430;1.12e-17;1!DOID:1325;1.46e-10;7!DOID:3904;1.46e-10;7!DOID:3910;7.98e-10;2!DOID:3905;2.05e-08;9 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,8.72e-18,1;DOID:1325,1.46e-10,7;DOID:3904,1.46e-10,7;DOID:3910,7.98e-10,2;DOID:3905,2.05e-08,9 | |||
|ontology_enrichment_uberon=UBERON:0006914!3.75e-11!25;UBERON:0001915!8.29e-11!3;UBERON:0001982!8.29e-11!3;UBERON:0000487!1.43e-10!22;UBERON:0001986!2.14e-10!18;UBERON:0004638!2.14e-10!18;UBERON:0004852!2.14e-10!18;UBERON:0002049!5.92e-10!79;UBERON:0007798!5.92e-10!79;UBERON:0003947!7.60e-08!2;UBERON:0005629!7.60e-08!2;UBERON:0005358!7.60e-08!2;UBERON:0001886!7.60e-08!2;UBERON:0004086!7.60e-08!2;UBERON:0005282!7.60e-08!2;UBERON:0005281!7.60e-08!2;UBERON:0002200!3.00e-07!11;UBERON:0006876!3.00e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0005284;4.69e-14;5!UBERON:0004903;7.98e-10;2!UBERON:0002173;7.98e-10;2!UBERON:0002186;7.98e-10;2!UBERON:0001281;1.64e-09;2!UBERON:0003497;1.64e-09;2!UBERON:0003909;1.64e-09;2!UBERON:0005629;1.64e-09;2!UBERON:0003835;1.64e-09;2!UBERON:0005358;1.64e-09;2!UBERON:0001886;1.64e-09;2!UBERON:0004086;1.64e-09;2!UBERON:0005282;1.64e-09;2!UBERON:0005281;1.64e-09;2!UBERON:0004821;5.80e-07;3!UBERON:0007499;5.80e-07;3!UBERON:0003215;5.80e-07;3!UBERON:0010368;5.80e-07;3!UBERON:0009911;5.80e-07;3!UBERON:0002299;5.80e-07;3!UBERON:0006524;5.80e-07;3!UBERON:0008874;5.80e-07;3!UBERON:0002169;5.80e-07;3!UBERON:0004894;5.80e-07;3!UBERON:0006876;6.94e-07;11!UBERON:0010523;9.37e-07;3!UBERON:0001915;9.37e-07;3!UBERON:0001280;9.37e-07;3!UBERON:0004647;9.37e-07;3!UBERON:0001982;9.37e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005284,4.69e-14,5;UBERON:0004903,7.98e-10,2;UBERON:0002173,7.98e-10,2;UBERON:0002186,7.98e-10,2;UBERON:0005629,1.33e-09,2;UBERON:0005358,1.33e-09,2;UBERON:0001886,1.33e-09,2;UBERON:0004086,1.33e-09,2;UBERON:0005282,1.33e-09,2;UBERON:0005281,1.33e-09,2;UBERON:0001281,1.71e-09,2;UBERON:0003497,1.71e-09,2;UBERON:0003909,1.71e-09,2;UBERON:0003835,1.71e-09,2;UBERON:0000058,1.93e-08,19;UBERON:0004821,5.80e-07,3;UBERON:0003215,5.80e-07,3;UBERON:0010368,5.80e-07,3;UBERON:0009911,5.80e-07,3;UBERON:0002299,5.80e-07,3;UBERON:0006524,5.80e-07,3;UBERON:0008874,5.80e-07,3;UBERON:0002169,5.80e-07,3;UBERON:0004894,5.80e-07,3;UBERON:0006876,6.94e-07,11;UBERON:0010523,9.12e-07,3;UBERON:0001915,9.12e-07,3;UBERON:0001982,9.12e-07,3;UBERON:0001280,9.64e-07,3;UBERON:0004647,9.64e-07,3;UBERON:0005171,9.64e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0.596287222100115,0,0.694281003215189,0,0,0,0.417989933073621,0,0,0.33472061276467,0.805658634218294,1.52054421143703,0.488124115096339,0,0,0.17859945656816,0,0,0,0,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96764655938411,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0.882926198829301,0.122988438543114,0.171567810298526,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.761016608938393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0.979005787313703,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13733384070897,0.510281115829547,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.116475108079,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.497992903438899,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,7.10340367016033,0,0,0,0,0,0,0,4.01138275443188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.945550727071745,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0.313932918407225,0,6.26141001265544,0,0.694238953340524,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.951329442515298,0.523014231561666,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.2323817051342,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857766365499703,0,0,0,0,0,0.308801447160972,0.438568099157414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,2.41540549706678,0,0,4.23285566725371,0,1.88541237681301,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129177819672012,0.124149428591716,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p@chr1:94535957..94535970,+ | |||
}} |
Latest revision as of 11:30, 28 July 2015
Short description: | p@chr1:94535957..94535970, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:94535957..94535970, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 8.72e-18 | 1 |
enteroendocrine cell | 8.72e-18 | 1 |
type D enteroendocrine cell | 8.72e-18 | 1 |
somatostatin secreting cell | 8.72e-18 | 1 |
pancreatic D cell | 8.72e-18 | 1 |
progenitor cell of endocrine pancreas | 8.72e-18 | 1 |
fibroblast of choroid plexus | 1.33e-09 | 2 |
endothelial cell of sinusoid | 1.71e-09 | 2 |
endothelial cell of hepatic sinusoid | 1.71e-09 | 2 |
pneumocyte | 5.80e-07 | 3 |
capillary endothelial cell | 9.12e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
brain vasculature | 4.69e-14 | 5 |
bronchoalveolar duct junction | 7.98e-10 | 2 |
alveolar duct | 7.98e-10 | 2 |
bronchiole | 7.98e-10 | 2 |
vascular plexus | 1.33e-09 | 2 |
ventricle of nervous system | 1.33e-09 | 2 |
choroid plexus | 1.33e-09 | 2 |
brain ventricle | 1.33e-09 | 2 |
ventricular system of brain | 1.33e-09 | 2 |
ventricular system of central nervous system | 1.33e-09 | 2 |
hepatic sinusoid | 1.71e-09 | 2 |
abdomen blood vessel | 1.71e-09 | 2 |
sinusoid | 1.71e-09 | 2 |
abdominal segment blood vessel | 1.71e-09 | 2 |
duct | 1.93e-08 | 19 |
pulmonary alveolus epithelium | 5.80e-07 | 3 |
alveolus | 5.80e-07 | 3 |
pulmonary lobule | 5.80e-07 | 3 |
lobule | 5.80e-07 | 3 |
alveolus of lung | 5.80e-07 | 3 |
alveolar system | 5.80e-07 | 3 |
pulmonary acinus | 5.80e-07 | 3 |
alveolar sac | 5.80e-07 | 3 |
alveolar wall | 5.80e-07 | 3 |
vasculature of organ | 6.94e-07 | 11 |
microcirculatory vessel | 9.12e-07 | 3 |
endothelium of capillary | 9.12e-07 | 3 |
capillary | 9.12e-07 | 3 |
liver parenchyma | 9.64e-07 | 3 |
liver lobule | 9.64e-07 | 3 |
hepatic duct | 9.64e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 8.72e-18 | 1 |
bronchus cancer | 1.46e-10 | 7 |
bronchogenic carcinoma | 1.46e-10 | 7 |
lung adenocarcinoma | 7.98e-10 | 2 |
lung carcinoma | 2.05e-08 | 9 |