FFCP PHASE1:Hg19::chr1:89664551..89664594,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=115361 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20480 | |||
|TSSclassifier=strong | |||
|UniProt=Q96PP9 | |||
|association_with_transcript=20bp_to_ENST00000355754_5end | |||
|cluster_id=chr1:89664551..89664594,- | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_2_at_GBP4_5end | |||
|id=chr1:89664551..89664594,- | |||
|ontology_enrichment_celltype=CL:0002057!2.69e-29!42;CL:0000738!3.17e-29!140;CL:0002087!4.23e-28!119;CL:0000860!5.14e-27!45;CL:0000766!3.67e-26!76;CL:0002031!3.00e-25!124;CL:0000037!6.33e-24!172;CL:0000566!6.33e-24!172;CL:0002194!2.78e-23!63;CL:0000576!2.78e-23!63;CL:0000040!2.78e-23!63;CL:0000559!2.78e-23!63;CL:0002032!1.63e-22!165;CL:0000837!1.63e-22!165;CL:0002009!1.85e-22!65;CL:0000988!1.02e-21!182;CL:0000557!3.20e-21!71;CL:0000839!5.31e-21!70;CL:0000763!1.04e-16!112;CL:0000049!1.04e-16!112;CL:0002393!1.67e-07!9;CL:0002397!1.67e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.71e-26;33!CL:0002057;8.71e-26;33!CL:0000576;1.06e-22;48!CL:0000473;1.68e-18;39!CL:0000234;1.68e-18;39!CL:0000766;1.49e-14;69!CL:0002087;1.42e-11;104!CL:0000763;1.32e-07;100!CL:0000738;2.02e-07;136!CL:0000094;6.84e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.73e-36,42;CL:0002057,3.73e-36,42;CL:0000473,1.17e-31,48;CL:0000234,1.17e-31,48;CL:0002087,2.60e-31,115;CL:0000738,2.40e-30,136;CL:0000766,2.54e-28,72;CL:0002194,1.01e-26,59;CL:0000576,1.01e-26,59;CL:0000040,1.01e-26,59;CL:0000559,1.01e-26,59;CL:0002031,1.57e-25,120;CL:0002009,3.63e-25,61;CL:0000037,3.11e-24,168;CL:0002032,7.89e-23,161;CL:0000837,7.89e-23,161;CL:0000557,6.53e-22,67;CL:0000839,1.01e-21,66;CL:0000988,3.31e-21,177;CL:0000763,9.79e-17,108;CL:0000049,9.79e-17,108;CL:0002393,5.73e-09,9;CL:0002397,5.73e-09,9;CL:0000094,6.08e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;6.71e-26;42!CL:0000049;9.85e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!8.27e-26!112;UBERON:0002390!2.24e-24!102;UBERON:0003061!2.24e-24!102;UBERON:0007023!3.97e-20!115;UBERON:0002405!1.43e-18!115;UBERON:0002371!1.29e-16!80;UBERON:0001474!1.31e-13!86;UBERON:0003081!7.37e-12!216;UBERON:0004765!4.30e-09!101;UBERON:0001434!4.30e-09!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,6.06e-27,108;UBERON:0002390,2.37e-25,98;UBERON:0003061,2.37e-25,98;UBERON:0002405,4.05e-22,93;UBERON:0002371,6.33e-18,76;UBERON:0007023,5.49e-16,114;UBERON:0001474,3.28e-15,82;UBERON:0003081,4.22e-13,203;UBERON:0004765,3.03e-12,90;UBERON:0001434,2.63e-10,100 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01697543935533,0,0.730310090387373,0.487932798790507,0,0,0,0,0,0.125542639594803,9.398848906998,14.3676031537405,12.4363034475613,6.68719270643137,3.83829398097213,4.33485145285013,0,0,0,0,0,3.81680571135301,7.20194031091441,10.6288557159175,14.1057065965304,3.58264758783879,3.88672399222775,3.09090681161024,4.9435401185052,4.53451132426571,9.94594650870046,7.43772918098191,4.11167888021826,7.43295290148249,258.923153089935,199.549190386169,212.124560210061,9.65287906062532,4.51839278508678,14.8969135253776,5.83551252582075,4.91231070104122,8.31476892446813,41.3213254700718,19.5766706516417,19.8194508997703,249.037731640971,232.774088444444,248.062804810028,83.2900514864036,31.2061873580127,44.2203796786858,151.251696484559,112.640310378764,148.774358623005,108.971910474006,50.0857584943088,78.7991344727802,14.576614755524,18.0713654970287,15.3050811221114,4.83013113929929,4.6554836780867,8.03627933485401,10.2604587746849,9.74691718275542,16.0744455312878,0,1.63841583378639,3.55803701545422,0.426730222566507,3.2031678962881,3.4485146397269,1.98313461835459,0,0,5.87237189370939,2.6759125968766,10.5737062863221,13.4522055115569,2.37045676297569,4.32761494250433,2.75107533924415,1.64481199199607,1.5046784585161,0.977766799900771,1.89379122293893,3.89653456815823,2.45103005147382,3.82987679717288,1.32920336750173,4.33286182024025,2.81800903396485,4.1618991219161,4.43982342429925,3.03985019564433,4.34704628602579,1.18629250529648,1.60524496853828,0,3.05935225283429,6.89796888483458,4.46715679127419,7.84361045260459,3.50421955756506,3.25541726928209,1.90090408889675,2.71035214339991,2.43174561193395,3.74792179657038,1.65744076430812,0.821127996921047,5.04016858061831,1.60464117470104,2.89648807765598,2.43806866313962,7.37770945674,1.53435074212236,0,0,0,0,1.94653948121054,0.567208902984407,0,0.263504357079378,12.1155644835384,0,0,0,0.348259474598534,0,0.953962497221368,1.14398982156026,0.371457501329565,0,0,0,0,0.838998872419812,0.275118041940067,0,2.58416759169329,1.42306505074684,2.67776490211736,0,0,0.976248230192678,0,0,0.892997282840798,0.22452937262617,0.900891843866578,0,0,0,6.58902087180316,7.75560528296651,0,0,1.51956613997496,0,0.286836620748814,0.709336764396714,0,0,0,1.24484414159907,1.61652806483626,2.61539044981534,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,1.05166641234618,3.40296549480063,0,0,0,0.600182192168805,0,0,0,0,0,0,0,2.58633690910099,0.355009592516614,0,0,0.193260853163297,0,0,0,0,0,0,0.252320850875628,0,1.56449532329816,2.57296375277154,0,0,0,0,0,0,0,0,0,0,0,0,4.42893272774789,0,0,0,1.26755034821831,2.94848165003288,4.13552934676983,0,0.122988438543114,0.514703430895577,0,0,0,0,0,0,0,0.231860809950154,0,5.77465791044295,4.62985512576611,2.85381228351897,0,0,0.492434012174795,0.468008530278475,0,0,0,0,0,0,0,0.985326475791887,0.088048434013226,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0.387815147273333,0,0.845302752556,6.91439103120663,5.2003718455683,0,0,0,0.428933980974443,0,0,0.65147236858747,0,0,1.20575750823834,0,0.799783929456456,3.64871341923571,1.00451418286425,0,0,0,0,0,0,0,0.224170287987055,4.72873824484625,4.09692392233083,7.7005821767849,0,0,0,0,0,10.4860983352606,11.966458368161,5.8018171881045,0,0,0,0.623912584592421,0.356857977594324,0.157702415033935,0.117141414992713,0,0,0,0,0,0,0,0,3.72182447021197,4.74571241800957,7.04401881502733,0,0,0,0,0,0,0,0,0,0,0,0,0.164254312027618,1.55776328755086,0,0,0,0,1.37777337797528,0,0.131124414959424,0,0,0,0,0.211103257785751,1.13733384070897,1.19065593693561,1.72732732881711,0,0,0,0.254876273045038,0,0,0.438519753291869,0,0,0,0,5.87333766392017,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0.178064071293475,0,0,0,0,0,0,0,22.4864513528545,0,0,0,1.14499909393593,0.372158369359667,0,0.190630193923825,0,0,0,0.78494864019923,0,0,0,0.202182481573316,1.58510321173008,0,0,21.446787087553,0,4.64099698787152,0.989838023675989,1.13008116620243,1.65409603063837,0.66343897524122,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.74277184738353,0,0,0,0,6.08937131078603,2.29391162142713,4.5571774973933,3.09701308095126,2.46817363851717,5.18778648954174,4.86028293514303,4.75875105776562,0,0,0,0,2.30830740762312,0,0,0,0.5745161103971,1.2700414963433,0,1.40398589056729,0,0,0,1.52362600021443,0,0,0,0.343505344755765,0.307240764308458,0.223676107892416,1.16794399198336,0,2.50565556505718,2.46174797895425,0.540911356951966,0,5.63948020351398,0,13.6252606722861,0,0.334330152832435,0,0,0.296964680832639,0,0,1.1253553312841,2.00355669041231,0,0,2.59022384726391,6.07824614168525,0,0,0.123084805461069,0,0.359473404589307,0.358042349351218,0,1.08507746200627,14.3689855408164,0,3.87733098438087,1.11321717794222,0,0,0,2.17499872630438,0,0.254253650292766,0,0,0,0,0.885741385813839,0.964771509003264,0,0.884634079449797,0.295547618953547,2.4132393686937,0,0,3.00106008164809,0.113942055847001,0.23056390438806,0.0897576444097721,0,0.31900115973192,5.49585560411174,2.13213910407454,0,0,0.498635045700469,0,0,0,0,0.794682894901893,0,0,0,0,0.995261931078505,3.27292988662355,0.611030144933625,0.593042257361244,0.247127877893006,0.626531697032732,2.29163852134302,1.60515529459758,1.87411556580271,0,0.19566461893209,0,1.18375320854817,4.83962864194656,0,15.4807120089796,0.300646838828985,0,0.664653872707185,0.992975867626496,0.313932918407225,1.19472429772959,0,0,0,3.5277263069176,0,4.36816670605075,0,0.0967563312890851,0,0.164230914106418,2.03676934625681,0,1.58186518546373,0,1.19228767021794,1.83601308272048,0.586654148204409,1.52301758477914,2.34798294213288,2.79733453414982,0,0,0,0.14405479798815,0,0.942776138467182,0,0,1.63197148218115,0,0,1.64286454670392,1.27746588066972,9.88460515265901,0,4.18923601908381,4.81236890424536,2.87149209830726,0.399358000997982,0.858452096273142,0.669514372325618,2.35142153703542,0.360299883542404,0,0,0,0,0.196854963029498,14.3944664511834,0,0.817220436669454,0,0,0,0.674921674654501,0,2.73373004961111,0,3.86147965766071,1.73100140845494,0,0,0,5.71756261098694,0.662091970365432,0,0.542999601753713,0,0,0,26.6800692435352,0,4.07923529472452,4.10346254298631,1.32506888912221,0.646414781807753,1.85125642439766,0,0,28.5122391555745,8.33182817028229,29.4109729296509,0.496166021811951,0.197611631897944,0,1.27668251554036,1.63205341010842,3.2589686222951,1.53172788381731,0.327872630709804,0,0,0.610131324509816,0.625954653532499,0,1.10929051536852,6.20964029413835,0,0,0,0,2.58792401667989,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0.295710299979268,0.477890301491107,0.899606224327209,0.155262956876259,0,0,0,0.150257608997218,0,0,0,0,0,4.37905477568478,0,0,0,0,2.31143796488764,3.21662387062389,0,2.04035332961045,3.47283711485751,8.3210479532199,3.04451029838529,0,0.219284049578707,0,0.192914038270915,1.68942440653073,0,0,5.46947921119288,1.7973596699725,0,0,0.327130788511688,0.327609848846413,0.983091635014877,0,8.99943281347185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315446980005013,0,0,7.34989145647681,1.73418907760441,0,1.11743701340006,0.615349092722265,0,1.45230230174858,2.90656162137332,1.42769420259154,0,0,2.38457178078183,1.15525666150338,0.381382095467167,0,0,5.26472298444801,0,1.56302802246618,0,0.163771917510097,1.18284868973636,1.95858995393344,0,0.620060389503552,1.58539525484767,0.546974809018219,0,5.95453414067153,0,1.53314913167514,1.60710550763486,1.00885116665647,0,1.36597314810779,3.81420191699347,15.671822307586,6.85952037749674,3.12660771693426,1.24968269769413,0,0.222462803784138,6.51492670659266,0.314231179832004,0,0.913158720509496,0,24.8430877701266,10.3640989056152,0,0,0,0,0,0,0,0.860454717640555,0.118332000730565,0,1.27016115057279,0.68732060563215,0,0,0,1.66855397145913,0,1.29485767437579,8.93166419649349,0,0.485710993059139,0,0,0,0,0,0.754814217833368,8.56633154998186,6.33822725461476,0,2.20633489578515,0,0.392616934229891,0.594092800654172,2.113278637917,0,8.27058478222711,6.38133090938414,4.69723432847166,0.178553938605658,0.352894871715692,0.0802413666891683,0,1.83491713361816,1.00337708206016,0,1.22384682343646,0,4.2322147241232,0,0,0.432626562123789,0,0,0.760191006068622,0,0,0,0,1.81868875723775,0.267964130156178,0,0.827463966895162,2.55880778281177,1.1903221573187,3.03567876229229,2.97958628620118,0,22.9129769801394,1.81905470062397,3.70118471424834,1.02669990325584,5.11875602910865,7.38738715544566,0.99798106963804,1.22104902916462,0.533636729388577,0,0.628776414746108,0,5.74534787659472,0.813792356631477,1.99727032255654,3.01910690386539,0.641136984606466 | |||
|short_description=p2@GBP4 | |||
}} |
Latest revision as of 16:46, 19 September 2015
Short description: | p2@GBP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GBP4_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 20bp_to_ENST00000355754_5end |
EntrezGene: | GBP4 |
HGNC: | 20480 |
UniProt: | Q96PP9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.73e-36 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.73e-36 | 42 |
defensive cell | 1.17e-31 | 48 |
phagocyte | 1.17e-31 | 48 |
nongranular leukocyte | 2.60e-31 | 115 |
leukocyte | 2.40e-30 | 136 |
myeloid leukocyte | 2.54e-28 | 72 |
monopoietic cell | 1.01e-26 | 59 |
monocyte | 1.01e-26 | 59 |
monoblast | 1.01e-26 | 59 |
promonocyte | 1.01e-26 | 59 |
hematopoietic lineage restricted progenitor cell | 1.57e-25 | 120 |
macrophage dendritic cell progenitor | 3.63e-25 | 61 |
hematopoietic stem cell | 3.11e-24 | 168 |
hematopoietic oligopotent progenitor cell | 7.89e-23 | 161 |
hematopoietic multipotent progenitor cell | 7.89e-23 | 161 |
granulocyte monocyte progenitor cell | 6.53e-22 | 67 |
myeloid lineage restricted progenitor cell | 1.01e-21 | 66 |
hematopoietic cell | 3.31e-21 | 177 |
myeloid cell | 9.79e-17 | 108 |
common myeloid progenitor | 9.79e-17 | 108 |
intermediate monocyte | 5.73e-09 | 9 |
CD14-positive, CD16-positive monocyte | 5.73e-09 | 9 |
granulocyte | 6.08e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 6.06e-27 | 108 |
hematopoietic system | 2.37e-25 | 98 |
blood island | 2.37e-25 | 98 |
immune system | 4.05e-22 | 93 |
bone marrow | 6.33e-18 | 76 |
adult organism | 5.49e-16 | 114 |
bone element | 3.28e-15 | 82 |
lateral plate mesoderm | 4.22e-13 | 203 |
skeletal element | 3.03e-12 | 90 |
skeletal system | 2.63e-10 | 100 |