FFCP PHASE1:Hg19::chr1:874201..874212,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=148398 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28706 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-442bp_to_ENST00000455979_5end | |||
|cluster_id=chr1:874201..874212,+ | |||
|coexpression_cluster_id=C276 | |||
|description=CAGE_peak_8_at_SAMD11_5end | |||
|id=chr1:874201..874212,+ | |||
|ontology_enrichment_celltype=CL:0002150!1.20e-07!3;CL:0000861!1.20e-07!3;CL:0000055!1.82e-07!180;CL:0002319!4.95e-07!25;CL:0002580!7.62e-07!3;CL:0000133!9.46e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000313;7.24e-13;1!CL:0000159;4.55e-07;2!CL:0000650;4.55e-07;2!CL:1000500;4.55e-07;2!CL:1000618;4.55e-07;2!CL:1001318;4.55e-07;2!CL:0002549;4.55e-07;2!CL:0002173;4.55e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000313,9.73e-13,1;CL:0002549,4.17e-07,2;CL:0000159,5.28e-07,2;CL:0000650,5.60e-07,2;CL:1000500,5.60e-07,2;CL:1000618,5.60e-07,2;CL:1001318,5.60e-07,2;CL:0002173,5.60e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2152;7.24e-13;1!DOID:3910;4.55e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,9.73e-13,1;DOID:3910,4.98e-07,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004911;7.24e-13;1!UBERON:0004903;4.55e-07;2!UBERON:0005629;4.55e-07;2!UBERON:0003567;4.55e-07;2!UBERON:0003838;4.55e-07;2!UBERON:0003586;4.55e-07;2!UBERON:0005358;4.55e-07;2!UBERON:0004909;4.55e-07;2!UBERON:0005169;4.55e-07;2!UBERON:0002321;4.55e-07;2!UBERON:0001886;4.55e-07;2!UBERON:0005215;4.55e-07;2!UBERON:0002303;4.55e-07;2!UBERON:0004086;4.55e-07;2!UBERON:0002319;4.55e-07;2!UBERON:0005282;4.55e-07;2!UBERON:0002173;4.55e-07;2!UBERON:0002186;4.55e-07;2!UBERON:0005281;4.55e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004911,9.73e-13,1;UBERON:0005629,4.17e-07,2;UBERON:0005358,4.17e-07,2;UBERON:0001886,4.17e-07,2;UBERON:0004086,4.17e-07,2;UBERON:0005282,4.17e-07,2;UBERON:0005281,4.17e-07,2;UBERON:0004903,4.98e-07,2;UBERON:0002173,4.98e-07,2;UBERON:0002186,4.98e-07,2;UBERON:0004909,5.28e-07,2;UBERON:0003567,5.60e-07,2;UBERON:0003838,5.60e-07,2;UBERON:0003586,5.60e-07,2;UBERON:0005169,5.60e-07,2;UBERON:0002321,5.60e-07,2;UBERON:0005215,5.60e-07,2;UBERON:0002303,5.60e-07,2;UBERON:0002319,5.60e-07,2 | |||
|phase1_expression=0.54503513781167,0.214100523890983,0.281908808191942,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0.492484232307152,0.408001382488506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0.0945348171640679,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302714855289863,1.15235184896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0.300091096084402,0,0.515281080091258,0,0.337552664482532,0.0974370051611986,0.252433774244115,0,0,0.710019185033229,0.302256294682921,0.67824236924195,0,0,0,0,0,0,0.10366105501537,0,0,0,0.643240938192885,0,0,0,0.118306800039844,0,0,0,0,0,0.134831308160164,0.588664395376038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.821905290201534,0.179060963239896,0,0,0,0,0.76228387266739,0,0.773288812777695,0,0.637938751653163,0,0,0,0,2.00068208423871,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0.460385919864187,0.561320188866147,0.128139149255701,1.02341449813341,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0.451199612907412,0,0,0,0,0,0,0.215915916102139,0,0.812839312631559,1.00337954770971,0,0,0,0,0,0,3.60816110269676,0.976135183992909,0,5.31102895946392,4.62053199555293,0,0,0,0,0.616194468458578,0.15350367472613,0,0.322260734604821,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.45695363593188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0.306806047506464,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,1.01701460117107,0,0.344743373241465,0,0,0,0,0,0,0,0.219385397153973,0.435753854075961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.442306057399416,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25783230675811,1.0232504392066,0.739039113478883,0,0,0,0,0,0,0.195551382734803,0,0,9.79067086952438,0,0,0,0,0,0.471388069233591,0,0,0.305994652908965,0.866851769704557,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0.453248366080503,0,0,0,0,1.53978154095896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.415045904808692,0,0,0,0,0,0.28984205722165,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0.680117776536817,0,0,0,6.17602894321944,0,0,0,0,13.5808004851612,2.07258205038719,0.607719912354764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0.215649622793364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0.0679697329768317,0.0657727735628491,0.236387681767936,0,0.156986185701028,0,0,0,0,0,0,0.316027223465453,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00669888618013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0.315543124386369,0,0,0,0,0,0,0,0.218531143927391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |||
|short_description=p8@SAMD11 | |||
}} |
Latest revision as of 14:58, 19 September 2015
Short description: | p8@SAMD11 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SAMD11_5end |
Coexpression cluster: | C276_mesothelioma_kidney_renal_small_clear_cerebellum_Renal |
Association with transcript: | -442bp_to_ENST00000455979_5end |
EntrezGene: | SAMD11 |
HGNC: | 28706 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
serous secreting cell | 9.73e-13 | 1 |
fibroblast of choroid plexus | 4.17e-07 | 2 |
seromucus secreting cell | 5.28e-07 | 2 |
mesangial cell | 5.60e-07 | 2 |
kidney interstitial cell | 5.60e-07 | 2 |
juxtaglomerular complex cell | 5.60e-07 | 2 |
renal interstitial pericyte | 5.60e-07 | 2 |
extraglomerular mesangial cell | 5.60e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
epithelium of female gonad | 9.73e-13 | 1 |
vascular plexus | 4.17e-07 | 2 |
ventricle of nervous system | 4.17e-07 | 2 |
choroid plexus | 4.17e-07 | 2 |
brain ventricle | 4.17e-07 | 2 |
ventricular system of brain | 4.17e-07 | 2 |
ventricular system of central nervous system | 4.17e-07 | 2 |
bronchoalveolar duct junction | 4.98e-07 | 2 |
alveolar duct | 4.98e-07 | 2 |
bronchiole | 4.98e-07 | 2 |
epithelium of gonad | 5.28e-07 | 2 |
abdomen connective tissue | 5.60e-07 | 2 |
abdominal segment connective tissue | 5.60e-07 | 2 |
trunk connective tissue | 5.60e-07 | 2 |
interstitial tissue | 5.60e-07 | 2 |
extraglomerular mesangium | 5.60e-07 | 2 |
kidney interstitium | 5.60e-07 | 2 |
juxtaglomerular apparatus | 5.60e-07 | 2 |
mesangium | 5.60e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 9.73e-13 | 1 |
lung adenocarcinoma | 4.98e-07 | 2 |