FFCP PHASE1:Hg19::chr1:54411715..54411760,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=115353 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28792 | |||
|TSSclassifier=strong | |||
|UniProt=A6NL66,Q9Y546 | |||
|association_with_transcript=0bp_to_ENST00000371368,ENST00000371370_5end | |||
|cluster_id=chr1:54411715..54411760,+ | |||
|description=CAGE_peak_3_at_LRRC42_5end | |||
|id=chr1:54411715..54411760,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!2.26e-11!143;DOID:305!4.49e-09!106;DOID:14566!4.86e-07!239;DOID:162!7.43e-07!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.06e-09,143;DOID:305,2.45e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000924!5.58e-09!173;UBERON:0006601!5.58e-09!173;UBERON:0004121!2.59e-08!169;UBERON:0000073!1.89e-07!94;UBERON:0001016!1.89e-07!94;UBERON:0005743!6.90e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.38e-07,171;UBERON:0000924,2.38e-07,171;UBERON:0006601,2.38e-07,171 | |||
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| |||
|short_description=p3@LRRC42 | |||
}} |
Latest revision as of 14:17, 18 September 2015
Short description: | p3@LRRC42 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LRRC42_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000371368, ENST00000371370_5end |
EntrezGene: | LRRC42 |
HGNC: | 28792 |
UniProt: | A6NL66Q9Y546 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.38e-07 | 171 |
ectoderm | 2.38e-07 | 171 |
presumptive ectoderm | 2.38e-07 | 171 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.06e-09 | 143 |
carcinoma | 2.45e-07 | 106 |