FFCP PHASE1:Hg19::chr1:2985726..2985752,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=63976 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14000 | |||
|TSSclassifier=strong | |||
|UniProt=F8WEV3,D3YTA5,D6RDW0,Q9HAZ2 | |||
|association_with_transcript=0bp_to_ENST00000378398,ENST00000441472,ENST00000442529,ENST00000511072,NM_022114,NM_199454,uc001akc.2,uc001akd.2,uc001ake.2,uc001akf.2,uc009vlh.2_5end | |||
|cluster_id=chr1:2985726..2985752,+ | |||
|description=CAGE_peak_2_at_PRDM16_5end | |||
|id=chr1:2985726..2985752,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003075!9.23e-20!86;UBERON:0007284!9.23e-20!86;UBERON:0005743!9.79e-20!86;UBERON:0007023!2.34e-18!115;UBERON:0002346!1.00e-17!90;UBERON:0001017!2.70e-17!82;UBERON:0001049!3.25e-16!57;UBERON:0005068!3.25e-16!57;UBERON:0006241!3.25e-16!57;UBERON:0007135!3.25e-16!57;UBERON:0000073!6.19e-16!94;UBERON:0001016!6.19e-16!94;UBERON:0002616!2.96e-14!59;UBERON:0000955!8.45e-14!69;UBERON:0006238!8.45e-14!69;UBERON:0000481!2.85e-13!347;UBERON:0003056!9.34e-13!61;UBERON:0000475!1.20e-12!365;UBERON:0000033!3.20e-12!123;UBERON:0000153!3.46e-12!129;UBERON:0007811!3.46e-12!129;UBERON:0002780!9.87e-12!41;UBERON:0001890!9.87e-12!41;UBERON:0006240!9.87e-12!41;UBERON:0003080!3.76e-11!42;UBERON:0002020!7.48e-11!34;UBERON:0003528!7.48e-11!34;UBERON:0001893!1.00e-10!34;UBERON:0002791!1.81e-10!33;UBERON:0004121!1.00e-09!169;UBERON:0001869!1.16e-09!32;UBERON:0000025!5.68e-09!194;UBERON:0000924!6.76e-09!173;UBERON:0006601!6.76e-09!173;UBERON:0000956!3.12e-07!25;UBERON:0000203!3.12e-07!25;UBERON:0000477!3.69e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.59e-07;5!UBERON:0005388;1.59e-07;5!UBERON:0001802;1.59e-07;5!UBERON:0002791;8.86e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003075,9.86e-13,82;UBERON:0007284,9.86e-13,82;UBERON:0001017,2.60e-12,81;UBERON:0002346,1.23e-11,86;UBERON:0010314,8.29e-11,132;UBERON:0001049,1.23e-10,56;UBERON:0005068,1.23e-10,56;UBERON:0006241,1.23e-10,56;UBERON:0007135,1.23e-10,56;UBERON:0007023,2.44e-10,114;UBERON:0001016,4.64e-10,89;UBERON:0000073,8.18e-09,53;UBERON:0002616,8.18e-09,53;UBERON:0003056,9.00e-09,61;UBERON:0011216,1.63e-08,223;UBERON:0000955,6.68e-08,68;UBERON:0006238,6.68e-08,68;UBERON:0010371,7.21e-08,104;UBERON:0003528,2.47e-07,34;UBERON:0002020,2.47e-07,34;UBERON:0001893,2.90e-07,34;UBERON:0002791,4.87e-07,32;UBERON:0002780,6.37e-07,41;UBERON:0001890,6.37e-07,41;UBERON:0003080,6.37e-07,41;UBERON:0006240,6.37e-07,41 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0,1.0007329835313,0.446961094427288,0,0,0,0.261185628199839,0.737201809504527,2.79120467188971,0,0,0.123766352960047,0.331397375727916,0,0,0,0,1.10808952269109,0.612002073732759,2.5076377718247,3.72106783270374,5.61185142798825,4.77062030460251,0,0,0,0,0,0.77408061658038,0,0.90361775633475,0,0,0,0.880801318004542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,3.96513985737078,2.24203425192614,0,0,0.393010762749165,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1686349143074,2.00535164254356,2.17269778441236,0.795285947051099,1.45990461090791,0,0,0.263504357079378,1.5062593682237,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,1.13967460498122,0.662045904066094,1.72101972449288,1.06400514659507,1.12135520028461,0,0.98667019366864,0,0.134710672069688,0,0.454072282934794,1.15235184896,1.40592859100278,0,0,0,0,0.323745888736263,0,0,0.982674538494144,0.723280468230358,1.18800285728205,1.7308685049499,0,0,1.17835279767846,2.12701483782339,0,0.877955241761676,1.22595118319608,0.600952235626387,0,0.717558542755448,0.427114777637135,0,0,0.103052529238439,0.515281080091258,0.37223371266318,4.55696097051419,2.53336213419116,0.504867548488229,0.0920498986422993,4.20279747728911,0,0,0.508681776931463,0,0,0,0.365921118388786,0.265059536642971,0.232387885739037,1.14027160516907,0.504641701751257,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0.614942192715568,0.171567810298526,0.109750285408626,0,0,0,3.9096996637239,1.03993478527958,0,0.34779121492523,0.117408694235822,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0.718874566474748,0,1.42636905040718,0,1.02738161275192,0.179060963239896,0,0.197030760201927,0.215627574859517,0.128343036279748,4.57370323600434,3.90419561572865,0.773288812777695,2.51274398001523,1.27587750330633,0,0,0,0.36807447515742,1.00034104211935,0.813795071099207,0.207970861530807,0.535286966391485,0.157702415033935,0.819989904948992,1.20378439891088,0,2.0694614258501,1.32845119707087,1.84369168541703,0,0.391602314925481,0.343143423810856,0,0,0,0,0,0,0,0.767309866440312,0,0.128139149255701,0.511707249066704,0.64341568457443,0,0.154209693802656,0,0.328508624055237,0,0,1.0877350463246,0,0,0.34444334449382,0,0,0,0.0770153371044148,0,0,0,0,0.170093705276516,0,0,0,0,0,1.66215201785745,0,0,0,2.05160100093111,3.93617574839647,3.25378394664303,1.03041011647722,0,0,0,0,0,0.870036464629098,0.154048617114644,0,0.137836572484531,0.107420244868274,0,0.170453254832202,0.445160178233687,0.495854746082934,0.960950336825531,4.46644493731044,1.11273558941105,0,0,0,0,0.532306030317022,0,0.74129687641568,1.14499909393593,0,0.316379424718726,0,0,0.42793898803392,0.95460974377781,2.35484592059769,0,0,0.117812402345686,0.202182481573316,1.58510321173008,0.421258456238981,0,0.243713489631284,0,0,0,0,1.65409603063837,1.32687795048244,0.438450885253763,0,0,0.202910376962704,0,0,0,0,0.35667105148125,0,2.53329162357197,0.329294892959902,2.65631221636001,0.349934720244983,0,1.34060455107157,1.08890984861323,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,1.28188885352968,1.92495971052672,0,0,0,0,0.318852545457645,0,1.7235483311913,4.86849240264931,0,2.52717460302113,0,0,0,2.03150133361924,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99424864653152,0.439524537815682,0.970884173996107,0,1.13654458722565,0,0.296964680832639,0,0,1.26602474769461,0,0,6.3337622438398,14.345855154077,0.276283915531148,4.53478946137697,0,0,0,0,1.07412704805365,0,0.493217028184668,0,0,0.969332746095218,0.463840490809256,1.99613798001194,0.520855522170466,0,0,0.1137934482855,0,1.65471377237555,0,0,0.173624994933292,0.885741385813839,1.92954301800653,0,0.663475559587348,0.295547618953547,1.53569778007781,0,0.139423744278603,1.38510465306835,0,0.46112780877612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0.995261931078505,2.12298154808014,0,0,0,0,1.28062152663286,0,0.468528891450678,0,0.391329237864179,2.18502341580683,1.57833761139756,3.62972148145992,2.14250933141343,4.29668741473718,0.150323419414493,1.55532287095871,0,0,0.941798755221676,0,0,3.05084280628905,0,0,0,2.62090002363045,2.92376255201748,0,0,0,0.678923115418936,9.26689330260753,1.80784592624426,0,0,0.823040347426423,0.195551382734803,0,2.98834192635094,0.39961921916426,3.02589876023623,2.1761953271524,0,0,0,0,0,0.313808538937,1.63197148218115,0,0.600420288709789,1.23214841002794,0,0,0,0.837847203816763,7.10397314436219,0.717873024576814,4.3929380109778,8.15529491459485,1.78537165953498,5.84496210634518,0,0,0.393915911536118,0.247247575143499,0.808842526250219,2.65754200089822,0,0,2.31545790389679,0,0,0,0,0,0.91124334987037,0,0.86686278029118,1.99327434912993,0,0.179287339332845,0,0,0.662091970365432,0.25426853765475,0,0,0,0,0,0,0,0.293104467356165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| |||
|short_description=p2@PRDM16 | |||
}} |
Latest revision as of 11:45, 17 September 2015
Short description: | p2@PRDM16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PRDM16_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000378398, ENST00000441472, ENST00000442529, ENST00000511072, NM_022114, NM_199454, uc001akc.2, uc001akd.2, uc001ake.2, uc001akf.2, uc009vlh.2_5end |
EntrezGene: | PRDM16 |
HGNC: | 14000 |
UniProt: | F8WEV3D3YTA5D6RDW0Q9HAZ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural plate | 9.86e-13 | 82 |
presumptive neural plate | 9.86e-13 | 82 |
central nervous system | 2.60e-12 | 81 |
neurectoderm | 1.23e-11 | 86 |
structure with developmental contribution from neural crest | 8.29e-11 | 132 |
neural tube | 1.23e-10 | 56 |
neural rod | 1.23e-10 | 56 |
future spinal cord | 1.23e-10 | 56 |
neural keel | 1.23e-10 | 56 |
adult organism | 2.44e-10 | 114 |
nervous system | 4.64e-10 | 89 |
regional part of nervous system | 8.18e-09 | 53 |
regional part of brain | 8.18e-09 | 53 |
pre-chordal neural plate | 9.00e-09 | 61 |
organ system subdivision | 1.63e-08 | 223 |
brain | 6.68e-08 | 68 |
future brain | 6.68e-08 | 68 |
ecto-epithelium | 7.21e-08 | 104 |
brain grey matter | 2.47e-07 | 34 |
gray matter | 2.47e-07 | 34 |
telencephalon | 2.90e-07 | 34 |
regional part of telencephalon | 4.87e-07 | 32 |
regional part of forebrain | 6.37e-07 | 41 |
forebrain | 6.37e-07 | 41 |
anterior neural tube | 6.37e-07 | 41 |
future forebrain | 6.37e-07 | 41 |