FFCP PHASE1:Hg19::chr9:100396030..100396055,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr9:100396030..100396055,+
|short_description=p3@NCBP1
|description=CAGE_peak_3_at_NCBP1_5end
|association_with_transcript=80bp_to_ENST00000478100_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4686 | |EntrezGene=4686 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7658 | |HGNC=7658 | ||
|TSSclassifier=strong | |||
|UniProt=F2Z2T1 | |UniProt=F2Z2T1 | ||
|association_with_transcript=80bp_to_ENST00000478100_5end | |||
|cluster_id=chr9:100396030..100396055,+ | |||
|coexpression_cluster_id=C1115 | |||
|description=CAGE_peak_3_at_NCBP1_5end | |||
|id=chr9:100396030..100396055,+ | |||
|ontology_enrichment_celltype=CL:0000542!6.80e-20!53;CL:0000051!6.80e-20!53;CL:0000838!1.62e-19!52;CL:0000084!3.32e-12!25;CL:0000827!3.32e-12!25;CL:0000791!7.03e-12!18;CL:0000789!7.03e-12!18;CL:0002420!7.03e-12!18;CL:0002419!7.03e-12!18;CL:0000790!7.03e-12!18;CL:0000625!1.76e-08!11;CL:0000236!2.14e-08!14;CL:0000945!3.16e-07!24;CL:0000826!3.16e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000084;2.51e-12;25!CL:0000542;4.29e-12;53!CL:0000791;4.94e-12;18!CL:0000789;4.94e-12;18!CL:0002419;4.94e-12;18!CL:0000625;1.53e-08;11!CL:0000236;6.33e-08;13!CL:0000945;3.65e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,6.80e-20,53;CL:0000051,6.80e-20,53;CL:0000838,1.62e-19,52;CL:0000084,3.32e-12,25;CL:0000827,3.32e-12,25;CL:0000791,7.03e-12,18;CL:0000789,7.03e-12,18;CL:0002420,7.03e-12,18;CL:0002419,7.03e-12,18;CL:0000790,7.03e-12,18;CL:0000625,1.76e-08,11;CL:0000236,2.14e-08,14;CL:0000945,3.16e-07,24;CL:0000826,3.16e-07,24 | |||
|ontology_enrichment_development_v019=CL:0000051;4.29e-12;53!CL:0000790;4.94e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003080!5.56e-09!42;UBERON:0001869!6.98e-09!32;UBERON:0001049!7.24e-09!57;UBERON:0005068!7.24e-09!57;UBERON:0006241!7.24e-09!57;UBERON:0007135!7.24e-09!57;UBERON:0002780!8.64e-09!41;UBERON:0001890!8.64e-09!41;UBERON:0006240!8.64e-09!41;UBERON:0001017!8.77e-09!82;UBERON:0000955!1.12e-08!69;UBERON:0006238!1.12e-08!69;UBERON:0001893!1.28e-08!34;UBERON:0000073!1.44e-08!94;UBERON:0001016!1.44e-08!94;UBERON:0002791!2.40e-08!33;UBERON:0002020!2.66e-08!34;UBERON:0003528!2.66e-08!34;UBERON:0007023!2.82e-08!115;UBERON:0002616!5.66e-08!59;UBERON:0005743!7.92e-08!86;UBERON:0002619!4.96e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;2.20e-08;32!UBERON:0002791;6.80e-08;32!UBERON:0001893;9.54e-08;34!UBERON:0003528;1.35e-07;34!UBERON:0002020;1.35e-07;34!UBERON:0002619;3.88e-07;22!UBERON:0002780;6.79e-07;41!UBERON:0001890;6.79e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.43e-09,89;UBERON:0001869,6.98e-09,32;UBERON:0002780,8.64e-09,41;UBERON:0001890,8.64e-09,41;UBERON:0003080,8.64e-09,41;UBERON:0006240,8.64e-09,41;UBERON:0001049,1.12e-08,56;UBERON:0005068,1.12e-08,56;UBERON:0006241,1.12e-08,56;UBERON:0007135,1.12e-08,56;UBERON:0001893,1.28e-08,34;UBERON:0001017,1.34e-08,81;UBERON:0000955,1.71e-08,68;UBERON:0006238,1.71e-08,68;UBERON:0007023,2.34e-08,114;UBERON:0003528,2.66e-08,34;UBERON:0002020,2.66e-08,34;UBERON:0002791,2.90e-08,32;UBERON:0000073,5.43e-08,53;UBERON:0002616,5.43e-08,53;UBERON:0002619,4.96e-07,22 | |||
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| ||
|short_description=p3@NCBP1 | |||
}} | }} |
Latest revision as of 17:44, 19 September 2015
Short description: | p3@NCBP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NCBP1_5end |
Coexpression cluster: | C1115_CD4_CD34_CD8_CD19_Basophils_Peripheral_Dendritic |
Association with transcript: | 80bp_to_ENST00000478100_5end |
EntrezGene: | NCBP1 |
HGNC: | 7658 |
UniProt: | F2Z2T1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 6.80e-20 | 53 |
common lymphoid progenitor | 6.80e-20 | 53 |
lymphoid lineage restricted progenitor cell | 1.62e-19 | 52 |
T cell | 3.32e-12 | 25 |
pro-T cell | 3.32e-12 | 25 |
mature alpha-beta T cell | 7.03e-12 | 18 |
alpha-beta T cell | 7.03e-12 | 18 |
immature T cell | 7.03e-12 | 18 |
mature T cell | 7.03e-12 | 18 |
immature alpha-beta T cell | 7.03e-12 | 18 |
CD8-positive, alpha-beta T cell | 1.76e-08 | 11 |
B cell | 2.14e-08 | 14 |
lymphocyte of B lineage | 3.16e-07 | 24 |
pro-B cell | 3.16e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.43e-09 | 89 |
cerebral hemisphere | 6.98e-09 | 32 |
regional part of forebrain | 8.64e-09 | 41 |
forebrain | 8.64e-09 | 41 |
anterior neural tube | 8.64e-09 | 41 |
future forebrain | 8.64e-09 | 41 |
neural tube | 1.12e-08 | 56 |
neural rod | 1.12e-08 | 56 |
future spinal cord | 1.12e-08 | 56 |
neural keel | 1.12e-08 | 56 |
telencephalon | 1.28e-08 | 34 |
central nervous system | 1.34e-08 | 81 |
brain | 1.71e-08 | 68 |
future brain | 1.71e-08 | 68 |
adult organism | 2.34e-08 | 114 |
brain grey matter | 2.66e-08 | 34 |
gray matter | 2.66e-08 | 34 |
regional part of telencephalon | 2.90e-08 | 32 |
regional part of nervous system | 5.43e-08 | 53 |
regional part of brain | 5.43e-08 | 53 |
regional part of cerebral cortex | 4.96e-07 | 22 |