FFCP PHASE1:Hg19::chr8:99306637..99306693,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:99306637..99306693,-
|short_description=p3@NIPAL2
|description=CAGE_peak_3_at_NIPAL2_5end
|association_with_transcript=-16bp_to_ENST00000341166,NM_024759,u...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79815 | |EntrezGene=79815 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25854 | |HGNC=25854 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H841,A2RTY8 | |UniProt=Q9H841,A2RTY8 | ||
|association_with_transcript=-16bp_to_ENST00000341166,NM_024759,uc003yil.1,uc003yim.1_5end | |||
|cluster_id=chr8:99306637..99306693,- | |||
|description=CAGE_peak_3_at_NIPAL2_5end | |||
|id=chr8:99306637..99306693,- | |||
|ontology_enrichment_celltype=CL:0000057!3.54e-09!75 | |||
|ontology_enrichment_celltype_v019=CL:0002334;3.12e-07;12!CL:0002620;6.28e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.41e-10,76;CL:0002620,1.59e-07,23;CL:0002334,5.04e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002616!1.46e-13!59;UBERON:0007023!3.28e-13!115;UBERON:0001049!3.43e-11!57;UBERON:0005068!3.43e-11!57;UBERON:0006241!3.43e-11!57;UBERON:0007135!3.43e-11!57;UBERON:0002619!2.49e-10!22;UBERON:0000475!3.53e-10!365;UBERON:0000955!1.19e-09!69;UBERON:0006238!1.19e-09!69;UBERON:0001950!1.45e-09!20;UBERON:0002780!2.51e-09!41;UBERON:0001890!2.51e-09!41;UBERON:0006240!2.51e-09!41;UBERON:0000468!5.76e-09!659;UBERON:0003075!7.44e-09!86;UBERON:0007284!7.44e-09!86;UBERON:0003080!1.13e-08!42;UBERON:0001869!1.14e-08!32;UBERON:0001893!1.32e-08!34;UBERON:0002020!1.55e-08!34;UBERON:0003528!1.55e-08!34;UBERON:0000033!2.60e-08!123;UBERON:0000956!3.01e-08!25;UBERON:0000203!3.01e-08!25;UBERON:0002791!3.45e-08!33;UBERON:0005743!6.88e-08!86;UBERON:0001017!7.55e-08!82;UBERON:0000153!8.47e-08!129;UBERON:0007811!8.47e-08!129;UBERON:0002346!1.07e-07!90;UBERON:0000062!7.15e-07!511;UBERON:0000073!8.37e-07!94;UBERON:0001016!8.37e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;7.80e-13;22!UBERON:0001950;1.68e-11;20!UBERON:0000956;1.51e-10;25!UBERON:0000203;1.51e-10;25!UBERON:0001869;4.21e-08;32!UBERON:0001893;2.09e-07;34!UBERON:0003688;3.09e-07;6!UBERON:0002358;3.09e-07;6!UBERON:0003684;3.09e-07;6!UBERON:0001178;3.09e-07;6!UBERON:0002791;4.90e-07;32!UBERON:0003528;5.00e-07;34!UBERON:0002020;5.00e-07;34!UBERON:0004457;8.90e-07;9!UBERON:0000042;8.90e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,1.68e-12,22;UBERON:0007023,2.54e-12,114;UBERON:0001950,2.52e-11,20;UBERON:0000955,9.34e-11,68;UBERON:0006238,9.34e-11,68;UBERON:0000073,1.76e-10,53;UBERON:0002616,1.76e-10,53;UBERON:0000956,2.85e-10,25;UBERON:0000203,2.85e-10,25;UBERON:0001049,2.18e-09,56;UBERON:0005068,2.18e-09,56;UBERON:0006241,2.18e-09,56;UBERON:0007135,2.18e-09,56;UBERON:0001869,7.85e-09,32;UBERON:0001017,1.03e-08,81;UBERON:0002780,5.08e-08,41;UBERON:0001890,5.08e-08,41;UBERON:0003080,5.08e-08,41;UBERON:0006240,5.08e-08,41;UBERON:0001893,6.19e-08,34;UBERON:0002791,8.43e-08,32;UBERON:0001016,9.62e-08,89;UBERON:0003528,9.71e-08,34;UBERON:0002020,9.71e-08,34;UBERON:0003688,4.91e-07,6;UBERON:0002358,4.91e-07,6;UBERON:0003684,4.91e-07,6;UBERON:0001178,4.91e-07,6 | |||
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|phase1_expression=3.63356758541113,1.49870366723688,3.10099689011137,2.00146596706261,3.5756887554183,0,0,0.631719873426831,1.30592814099919,0,0,0,0.527533956456907,1.11389717664042,0.994192127183747,0.672325146451775,0,0,0,2.09305798730539,0.816002764977012,0.626909442956176,0,0.273748850145768,0.125542639594803,0.61130724598361,0.656804715599566,1.10195093839151,0,0.383829398097213,0.309632246632152,0,0,0,0.0774672005803016,0.284338464974843,0,1.66198622559563,0.200544447470142,0.434021741431704,2.01523926815932,0.971680998056939,1.80302897343931,0.581592955118259,0,0,0.232429036905685,0.411167888021826,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0.425208599930087,0.419317291016752,0.786300418025466,0.450530678524519,0.32145117339416,0.285012743741249,0.19891667719909,0,0,0,0,0.853460445133014,0.400395987036012,0,0,0.954053754535364,1.1384259382189,0.587237189370939,0.382273228125229,0,0,0.790152254325231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0,0,0,4.87613732627923,0,0.255725123687061,1.44575660953827,1.50401373190767,0.869079113764942,1.5905718941022,0,1.22895262313288,0.665188192387692,1.05401742831751,1.96468613246569,0.364295288292542,0.370784442784429,0,0.522389211897802,0.398873881556595,0,0,0,1.19257444420023,0,0,1.13061588384802,0.419499436209906,0.275118041940067,0.208994966536811,1.55050055501597,0.71153252537342,1.33888245105868,0.805658634218294,0,1.95249646038536,0.367663080345869,1.62028389576352,0.357198913136319,0,0.112611480483322,1.53316637465883,0,0.183201743930407,0,0,0,1.98788780678127,1.13967460498122,0,0.286836620748814,0.354668382198357,1.12135520028461,0,1.48000529050296,1.8672662123986,0.942974704487816,0.653847612453835,1.05950199351452,3.45705554687999,0,1.5608003841516,0,0.896692083310806,0.23486899728753,0.485618833104395,0.421352420106746,0.816616685019573,0.491337269247072,1.03325781175765,5.94001428641027,2.71993622206413,0,0.718618141816238,0.505008341862199,0.875829639103749,0.831192346452549,0.438977620880838,1.22595118319608,2.40380894250555,1.02088964844019,2.51145489964407,2.34913127700424,1.69545520927649,3.90118424909723,2.98852334791473,2.06112432036503,1.67505170698431,2.86919764810153,1.36411807225678,1.7670364197088,3.12969655383818,3.55621325001386,4.26011511019937,1.91428986632517,0.339121184620975,1.15956511897978,0.545492241181669,1.14721838155602,0.487894824518382,0.265059536642971,0.69716365721711,0.414644220061482,0.504641701751257,0,0,1.28648187638577,0,2.3218396401599,0,0.354920400119532,0.337169380156203,0.723033089650446,0.220587945464788,0.217879444092406,0.474541238222193,0.674156540800822,0.196221465125346,0,0,1.40241773803446,0.4115740113314,0,0,0,0.590789906681404,0,0.122988438543114,0.686271241194102,0.219500570817251,1.1240175325762,0.100528972411631,0.555530670951178,0.325808305310325,0,0,0.927443239800615,0.469634776943287,1.15493158208859,0.925971025153221,0.380508304469197,2.37061319387782,1.71697232418975,1.23108503043699,1.40402559083543,1.78357394746474,0.93733833986777,0.503946384596579,0.708875486211932,0.268675568108545,0.581267877027924,0,0.492663237895943,1.32072651019839,1.4512968087854,1.15295962733569,0.88369703398466,0.253991577168676,0,0,0,0.205654985406647,0,1.14330573052231,0.336393253036082,0.43596006883328,0.5867062865676,2.06834745212444,0,0.845302752556,0.797814349754612,2.08014873822732,0.771622122786426,0,0.266422179016099,0.142977993658148,0.542621605391443,0.823240336780769,0.65147236858747,0,1.58390374586686,1.50719688529793,0.871533458600294,1.59956785891291,0,1.00451418286425,2.10833939483032,1.19812427745791,0,1.42636905040718,2.17171960001369,1.43833425785268,2.50685348535854,0,0,0.215627574859517,0.128343036279748,0,0,0.773288812777695,0.335032530668698,0,0,0,0,0.981531933753119,0.500170521059677,0.813795071099207,2.07970861530807,1.07057393278297,1.41932173530541,0.585707074963566,0.601892199455438,2.27407504055985,4.1389228517002,1.99267679560631,1.29058417979192,2.5196248195744,0.979005787313703,1.02943027143257,0,0.431428401637234,0,0.303127571446259,1.66435439510497,0.604780586659361,3.2254015016441,2.76231551918512,2.52594084989766,3.84417447767103,4.09365799253363,2.41280881715411,2.96836132889982,1.23367755042124,1.06537035187876,0.98552587216571,2.07701771673448,0.464841513839837,0.120859449591622,0.601519410909855,0.0920809889358963,0.68888668898764,0.546273504020151,1.83574180943194,0.451199612907412,0.462092022626489,0.784349769176855,0,0.316654886678627,0,0.340187410553031,0,1.54227252690289,0.812839312631559,0,0,0,0,0.219259876645935,0.261435451024901,0.512900250232778,0.328014645699706,0.325378394664303,0.309123034943167,0.0915694648183434,0.330037999682352,0.574265537996172,0,1.6068392984416,0,0.308097234229289,0.921022048356777,0.689182862422653,1.39646318328756,0.870100163485371,0.426133137080504,0.178064071293475,0.495854746082934,0.576570202095319,1.78657797492418,0.708104465988849,0,0.3148123468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| ||
|short_description=p3@NIPAL2 | |||
}} | }} |
Latest revision as of 16:50, 19 September 2015
Short description: | p3@NIPAL2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NIPAL2_5end |
Coexpression cluster: | NA |
Association with transcript: | -16bp_to_ENST00000341166, NM_024759, uc003yil.1, uc003yim.1_5end |
EntrezGene: | NIPAL2 |
HGNC: | 25854 |
UniProt: | Q9H841A2RTY8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.41e-10 | 76 |
skin fibroblast | 1.59e-07 | 23 |
preadipocyte | 5.04e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 1.68e-12 | 22 |
adult organism | 2.54e-12 | 114 |
neocortex | 2.52e-11 | 20 |
brain | 9.34e-11 | 68 |
future brain | 9.34e-11 | 68 |
regional part of nervous system | 1.76e-10 | 53 |
regional part of brain | 1.76e-10 | 53 |
cerebral cortex | 2.85e-10 | 25 |
pallium | 2.85e-10 | 25 |
neural tube | 2.18e-09 | 56 |
neural rod | 2.18e-09 | 56 |
future spinal cord | 2.18e-09 | 56 |
neural keel | 2.18e-09 | 56 |
cerebral hemisphere | 7.85e-09 | 32 |
central nervous system | 1.03e-08 | 81 |
regional part of forebrain | 5.08e-08 | 41 |
forebrain | 5.08e-08 | 41 |
anterior neural tube | 5.08e-08 | 41 |
future forebrain | 5.08e-08 | 41 |
telencephalon | 6.19e-08 | 34 |
regional part of telencephalon | 8.43e-08 | 32 |
nervous system | 9.62e-08 | 89 |
brain grey matter | 9.71e-08 | 34 |
gray matter | 9.71e-08 | 34 |
omentum | 4.91e-07 | 6 |
peritoneum | 4.91e-07 | 6 |
abdominal cavity | 4.91e-07 | 6 |
visceral peritoneum | 4.91e-07 | 6 |