FFCP PHASE1:Hg19::chr1:183155389..183155406,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3918 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6493 | |||
|TSSclassifier=strong | |||
|UniProt=F5H430 | |||
|association_with_transcript=-4bp_to_ENST00000537180_5end | |||
|cluster_id=chr1:183155389..183155406,+ | |||
|coexpression_cluster_id=C268 | |||
|description=CAGE_peak_1_at_LAMC2_5end | |||
|id=chr1:183155389..183155406,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.13e-28!254;CL:0002076!3.73e-18!43;CL:0000220!1.17e-15!246;CL:0002321!1.92e-15!248;CL:0000223!7.59e-10!59;CL:0000076!1.62e-09!62;CL:0002368!1.88e-08!13;CL:0002251!6.57e-08!21;CL:1000497!1.28e-07!18;CL:0002518!1.28e-07!18;CL:1000449!6.48e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.37e-17;42!CL:0002251;1.34e-10;20!CL:0002368;5.06e-10;13!CL:1000497;1.66e-08;17!CL:0002518;1.66e-08;17!CL:1000507;1.09e-07;10!CL:1000494;1.09e-07;10!CL:1000449;1.14e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.06e-31,253;CL:0002076,9.97e-23,42;CL:0002321,1.12e-14,250;CL:0000223,2.32e-13,58;CL:0002251,1.44e-10,20;CL:0000076,4.18e-10,63;CL:0002368,5.10e-10,13;CL:1000497,1.66e-08,17;CL:0002518,1.66e-08,17;CL:1000507,1.11e-07,10;CL:1000494,1.11e-07,10;CL:1000449,1.14e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000223;1.54e-07;58 | |||
|ontology_enrichment_disease=DOID:193!1.78e-08!29;DOID:120!4.68e-08!27;DOID:1749!2.13e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;9.65e-09;14!DOID:193;9.84e-09;29!DOID:120;3.09e-08;27 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,9.70e-09,14;DOID:193,1.05e-08,29;DOID:120,3.32e-08,27 | |||
|ontology_enrichment_uberon=UBERON:0000464!1.33e-10!104;UBERON:0006554!2.03e-10!44;UBERON:0001008!2.32e-10!45;UBERON:0003104!8.82e-10!238;UBERON:0009142!8.82e-10!238;UBERON:0004119!1.04e-09!169;UBERON:0000925!1.04e-09!169;UBERON:0006595!1.04e-09!169;UBERON:0002100!1.19e-09!216;UBERON:0000481!3.05e-09!347;UBERON:0000483!3.69e-09!309;UBERON:0005156!3.69e-09!59;UBERON:0000990!3.69e-09!59;UBERON:0000119!4.25e-09!312;UBERON:0003100!7.65e-09!41;UBERON:0000468!1.57e-08!659;UBERON:0003914!4.99e-08!118;UBERON:0000467!7.10e-08!625;UBERON:0004111!7.97e-08!241;UBERON:0000480!1.02e-07!626;UBERON:0005153!1.46e-07!37;UBERON:0003064!1.50e-07!37;UBERON:0003134!1.58e-07!37;UBERON:0000474!1.58e-07!37;UBERON:0000466!2.21e-07!126;UBERON:0005631!2.24e-07!14;UBERON:0000158!2.24e-07!14;UBERON:0000922!4.56e-07!612;UBERON:0003133!4.73e-07!48;UBERON:0005256!5.32e-07!143;UBERON:0004211!6.48e-07!16;UBERON:0001285!6.48e-07!16;UBERON:0007684!6.48e-07!16;UBERON:0003220!6.48e-07!16;UBERON:0004208!6.48e-07!16;UBERON:0006555!7.65e-07!17;UBERON:0005103!7.65e-07!17;UBERON:0000083!7.65e-07!17;UBERON:0009201!7.65e-07!17;UBERON:0004819!7.65e-07!17;UBERON:0006553!7.65e-07!17;UBERON:0003074!7.65e-07!17;UBERON:0003060!7.65e-07!17;UBERON:0005911!8.44e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;6.36e-09;30!UBERON:0001008;6.36e-09;30!UBERON:0004211;1.09e-07;10!UBERON:0009773;1.09e-07;10!UBERON:0001231;1.09e-07;10!UBERON:0004810;1.09e-07;10!UBERON:0006555;1.14e-07;15!UBERON:0004819;1.14e-07;15!UBERON:0001285;1.14e-07;15!UBERON:0007684;1.14e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.22e-13,160;UBERON:0000925,4.22e-13,160;UBERON:0006595,4.22e-13,160;UBERON:0006554,5.31e-12,47;UBERON:0001008,1.81e-11,48;UBERON:0005911,1.21e-08,82;UBERON:0003100,2.87e-08,41;UBERON:0001007,4.09e-08,145;UBERON:0001555,4.09e-08,145;UBERON:0007026,4.09e-08,145;UBERON:0005631,5.95e-08,14;UBERON:0000158,5.95e-08,14;UBERON:0004810,1.11e-07,10;UBERON:0004211,1.14e-07,15;UBERON:0009773,1.14e-07,15;UBERON:0001231,1.14e-07,15;UBERON:0001285,1.14e-07,15;UBERON:0007684,1.14e-07,15;UBERON:0004208,1.14e-07,15;UBERON:0006555,1.40e-07,16;UBERON:0004819,1.40e-07,16;UBERON:0005153,1.40e-07,37;UBERON:0002100,1.52e-07,199;UBERON:0005157,2.10e-07,47;UBERON:0005156,2.57e-07,59;UBERON:0000990,2.57e-07,59;UBERON:0003134,5.02e-07,37;UBERON:0000474,5.02e-07,37;UBERON:0003914,5.62e-07,117;UBERON:0001637,6.46e-07,42;UBERON:0003509,6.46e-07,42;UBERON:0004572,6.46e-07,42 | |||
|phase1_expression=0.181678379270557,0.642301571672949,0,0,0.446961094427288,5.23403114460221,2.53299878168311,1.89515962028049,3.3954131665979,202.976231550246,162.587672137576,1095.48348123281,984.642129726817,0.247532705920093,1.65698687863958,3.36162573225888,1.20538905604795,2.19093027116212,2.43966399395253,0.123121058076788,0.816002764977012,0.313454721478088,0.572471974262113,4.51685602740518,0,0,0,0,0,0,1.70297735647684,1460.04090447254,3523.80804378675,3460.89753516113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0.188242339542605,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0.736555271975129,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.511450247374121,0.361439152384566,8.52274448081012,2.89693037921647,2.3858578411533,0.973269740605272,0.189069634328136,13.0820344502913,0.790513071238134,2.75056058545197,1218.20344405026,563.963137475117,0,0,0,0,0,0,0.198762407366705,0,12.1499175562658,15.8286223738723,2.93649605346934,0,0,25.5832591577636,21.3459757612026,0.33472061276467,99.9016706430685,3.80136052859256,8.29810995663776,35.6633187935493,25.9245423322163,0,0.22452937262617,0.112611480483322,9.19899824795299,0.949265659568129,0.366403487860815,0,0,1408.58378842039,12.9212707440783,0.25326102332916,0.529636723252875,1.43418310374407,3.19201543978521,12.8955848032731,0,12.5800449692752,0.622422070799533,0.134710672069688,0.980771418680752,0,0,0.234321431833797,0,45.6377457235559,0.298897361103602,0,0.809364721840658,0.421352420106746,0,0,0,0,0.247266929278557,0,0,0,0.375355559615893,0,2.19488810440419,0.30648779579902,1.50238058906597,0,2.33206526395521,0,0,1.20036438433761,0,2.83404594050192,0.18611685633159,1.18143432568886,0.0974370051611986,4.29137416214995,0,0.161646056818812,0,0,0.169560592310488,3748.87402966163,4201.9267338224,2920.81799944162,0.975789649036763,0,0.580969714347592,2.17688215532278,0.252320850875628,0,15.6449532329816,6.43240938192885,5.52539685409922,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2347220339942,0,0,0,0,0,29.0252714961748,6.51957679134397,1821.19623607073,1689.39835146202,1975.69589480578,985.603998712548,0,2.07986957055916,0,2.31860809950154,0.469634776943287,33.4930158805691,24.5382321665604,17.1228737011138,0.790204397959275,0,0,0,0,1529.7361706642,7454.54290308079,3717.20127459813,1466.43125073644,1173.57984371938,1124.84478067073,0,0,0.414656231081544,0.144119953416961,0.37872730027914,1.39695367442772,0,0,111.197089914758,0,0,0,0.897048674762886,0,1.0267360014933,0.129271715757778,0,0,0.26593811658487,3.12022310734098,0.257207374262142,0,1.8649552531127,0.142977993658148,0,0.823240336780769,0.325736184293735,0,0,3.01439377059586,13.0730018790044,19.5947062716832,0,0,0,7.90762023122223,1.14861935834114,0,0.434343920002738,0,0,0,0,0,0,0,1.30139853857622,0,0.167516265334349,0,0,0,0,0.24538298343828,2.50085260529839,0.271265023699736,0,0.356857977594324,0,0.117141414992713,1.80567659836631,6.82222512167955,19.6598835455759,3.32112799267718,3.87175253937577,0,0,0,0,0,0,113.066584149455,141.470123583923,109.162895892015,0.248107807818777,12.7373437829092,3.36792113319688,0.640695746278505,1.53512174720011,6.27330292460069,2.96836132889982,4.62629081407967,0,0.246381468041427,5.19254429183621,0.116210378459959,18.9749335858847,2690.99733794039,735.358777642068,1.14814448164607,0.182091168006717,7.0807184078089,322.607723228799,388.465360354668,35.2957396129585,245.513897417478,400.990638164035,2.27466768141793,0.340187410553031,10.5798798890048,1.54227252690289,7.58650025122788,13.0439341202262,333.37816514291,686.468783375126,64.9236788694317,0,0.261435451024901,0.769350375349168,0,0,4.73988653579522,0,0,2451.53958170566,1587.44712082118,0,3.48014585851639,3.38906957652218,3.22357716924872,0,3.00776685631166,0.870100163485371,0.596586391912706,1.15741646340759,3544.8655797469,4266.23511537063,2938.02747976281,1686.19904908116,3.71876439437829,100.425138638974,9.0614845120878,19.0980819709175,4.25844824253617,8.69932992075073,0.18532421910392,47.2312126248571,0,0.949138274156178,0.190630193923825,1.27948895655667,0.42793898803392,21.9560241068896,146.785395717256,0.719489830333259,0,0.353437207037059,5.0545620393329,0,46.7596886425269,0,1.46228093778771,3.16950440270266,0.818999468447914,1.1312434556297,1.13008116620243,3.30819206127675,102.833041162389,89.0055297065138,0,0,8.72514620939627,5.88664646389525,14.9298669342088,0,0,9.98678944147501,1.77380532035299,0.844430541190656,0,0.379473173765715,0,2962.87129504397,1772.27921651662,3462.73331859006,4.0481834334015,3015.69013556197,3640.66858917739,3271.62767279359,7180.69404366914,0,0,0,0,0,0,0,0,0,0,43.8621986606047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,9.35702702041099,0,0,0.111443384277478,0,200.784111664397,29.9934327640965,143.751208582441,0,0.140669416410513,28.2724110758181,0,0,3.58646378851925,9.11736921252787,0.503865495708552,0,0,0,19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| |||
|short_description=p1@LAMC2 | |||
}} |
Latest revision as of 01:59, 19 September 2015
Short description: | p1@LAMC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LAMC2_5end |
Coexpression cluster: | C268_Mallassezderived_Urothelial_Gingival_Small_Bronchial_Tracheal_Prostate |
Association with transcript: | -4bp_to_ENST00000537180_5end |
EntrezGene: | LAMC2 |
HGNC: | 6493 |
UniProt: | F5H430 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.06e-31 | 253 |
endo-epithelial cell | 9.97e-23 | 42 |
embryonic cell | 1.12e-14 | 250 |
endodermal cell | 2.32e-13 | 58 |
epithelial cell of alimentary canal | 1.44e-10 | 20 |
squamous epithelial cell | 4.18e-10 | 63 |
respiratory epithelial cell | 5.10e-10 | 13 |
kidney cell | 1.66e-08 | 17 |
kidney epithelial cell | 1.66e-08 | 17 |
kidney tubule cell | 1.11e-07 | 10 |
nephron tubule epithelial cell | 1.11e-07 | 10 |
epithelial cell of nephron | 1.14e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 4.22e-13 | 160 |
endoderm | 4.22e-13 | 160 |
presumptive endoderm | 4.22e-13 | 160 |
urinary system structure | 5.31e-12 | 47 |
renal system | 1.81e-11 | 48 |
endo-epithelium | 1.21e-08 | 82 |
female organism | 2.87e-08 | 41 |
digestive system | 4.09e-08 | 145 |
digestive tract | 4.09e-08 | 145 |
primitive gut | 4.09e-08 | 145 |
extraembryonic membrane | 5.95e-08 | 14 |
membranous layer | 5.95e-08 | 14 |
nephron tubule epithelium | 1.11e-07 | 10 |
nephron epithelium | 1.14e-07 | 15 |
renal tubule | 1.14e-07 | 15 |
nephron tubule | 1.14e-07 | 15 |
nephron | 1.14e-07 | 15 |
uriniferous tubule | 1.14e-07 | 15 |
nephrogenic mesenchyme | 1.14e-07 | 15 |
excretory tube | 1.40e-07 | 16 |
kidney epithelium | 1.40e-07 | 16 |
epithelial bud | 1.40e-07 | 37 |
trunk | 1.52e-07 | 199 |
epithelial fold | 2.10e-07 | 47 |
reproductive structure | 2.57e-07 | 59 |
reproductive system | 2.57e-07 | 59 |
female reproductive organ | 5.02e-07 | 37 |
female reproductive system | 5.02e-07 | 37 |
epithelial tube | 5.62e-07 | 117 |
artery | 6.46e-07 | 42 |
arterial blood vessel | 6.46e-07 | 42 |
arterial system | 6.46e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 9.70e-09 | 14 |
reproductive organ cancer | 1.05e-08 | 29 |
female reproductive organ cancer | 3.32e-08 | 27 |