FFCP PHASE1:Hg19::chr1:156223236..156223240,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23381 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24644 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=312bp_to_ENST00000468993_5end | |||
|cluster_id=chr1:156223236..156223240,- | |||
|coexpression_cluster_id=C1002 | |||
|description=CAGE_peak_4_at_SMG5_5end | |||
|id=chr1:156223236..156223240,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000650;1.87e-07;2!CL:1000500;1.87e-07;2!CL:1000618;1.87e-07;2!CL:1001318;1.87e-07;2!CL:0002173;1.87e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000650,2.40e-07,2;CL:1000500,2.40e-07,2;CL:1000618,2.40e-07,2;CL:1001318,2.40e-07,2;CL:0002173,2.40e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.85e-40;15!UBERON:0000179;1.85e-40;15!UBERON:0000463;1.85e-40;15!UBERON:0002390;2.05e-17;32!UBERON:0002193;4.16e-13;42!UBERON:0003567;1.87e-07;2!UBERON:0003838;1.87e-07;2!UBERON:0003586;1.87e-07;2!UBERON:0005169;1.87e-07;2!UBERON:0002321;1.87e-07;2!UBERON:0005215;1.87e-07;2!UBERON:0002303;1.87e-07;2!UBERON:0002319;1.87e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.42e-40,15;UBERON:0000179,1.42e-40,15;UBERON:0000463,1.42e-40,15;UBERON:0003567,2.40e-07,2;UBERON:0003838,2.40e-07,2;UBERON:0003586,2.40e-07,2;UBERON:0005169,2.40e-07,2;UBERON:0002321,2.40e-07,2;UBERON:0005215,2.40e-07,2;UBERON:0002303,2.40e-07,2;UBERON:0002319,2.40e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0.218441372130172,0,0.123766352960047,0,0,0,0,0,0,0.408001382488506,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0.46480320348181,0.284338464974843,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0.47296445977717,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0.251248665256743,0,0,0,0,0,0.211255286311942,0.425208599930087,0,0,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0.393010762749165,0,0.334372990781356,0,0,0,0.222820913770347,0,0.221533894583621,0.270803863765016,0.25618263945135,0.390178042679635,0.164437904603676,0,0.579606171470105,0,0,0,0.453237370790265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0.443458794925128,0.087834785693126,0.130979075497713,0.364295288292542,0,0,0,0,0,0.571994910780128,0,0.39752481473341,0,0.347140501607594,0,0,0,0,0,1.06729878806013,0.66944122552934,0,0,0,0.367663080345869,0,0.17859945656816,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0.454072282934794,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0.30648779579902,0,0,0,0,0,0,0.103052529238439,0.257640540045629,0.18611685633159,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0.109750285408626,0,0,0.0925884451585296,0,0,0,0.115930404975077,0.234817388471643,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0.43596006883328,0,0,7.15312891703765,0,0,0,0,0,0,0,0,0,0.325736184293735,0.355391948742546,0,0,0,0,0,0,0,0,1.14861935834114,0,0,0.205476322550383,0,0,0,0.215627574859517,0,0,0,0.773288812777695,0.502548796003046,0,1.49801404789436,0,0.828831026872071,0,0,0,0.207970861530807,0.178428988797162,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66435439510497,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0.120859449591622,0,0,0.114814448164607,0,0,0,0,0,0,0.211103257785751,0,0.170093705276516,0,0,0.270946437543853,1.00337954770971,0,0,0,0.219259876645935,0.261435451024901,0,0,0,0,0,0.082509499920588,0,0,0,0.096670718292122,0,0,0,0.322260734604821,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0.78494864019923,0.179872457583315,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0.655894752046633,0.202910376962704,0.30982349809975,0,0,0,0,0,0,0,0,0.349934720244983,0.288666338176536,0,0,0,0.43050537267123,0,0,0.229723400206959,5.58192370155386,7.64637207142375,1.70894156152249,5.24109906007136,4.93634727703433,2.59389324477087,3.24018862342869,0,0.106824071127473,0,0,0,0.144269212976445,0.213425530045242,0.318852545457645,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0.307240764308458,0,0,0.19538809540204,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0.369254416383208,0,0.0898683511473268,0.358042349351218,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0.520855522170466,0.349839999984783,0,0.1137934482855,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0.225595660617181,0,0,0,0.158936578980379,0.210998064528027,0.163232808159148,0,0.216388639742091,0,0.0884575645033392,0,0,0.370691816839509,0.208843899010911,0,0,0,0,0.19566461893209,0.242780379534093,0,0,0,0.063186579628488,0.150323419414493,0.311064574191741,0,0.330991955875499,0,1.19472429772959,0,0.277349346026277,0,0,0,0,0.171986032471617,0,0.0730893170861856,0,0,0,0,0,0,0,0.782205530939212,0,0,0,0,0.114536596165916,0,0,0.124252535565433,0,0.271808412147228,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0.0984274815147488,0.0846733320657845,0,0,0,0,0.415440338029185,0,0,0,0.335434687599266,0,0,0.105600336519406,0,0,0,0,0.5085370753095,0,0,0,0,0,0.851940108927109,0,0,0,0,0,0.171086837884329,0,0,0,0,0.496166021811951,0.395223263795889,0.365377795142688,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0.276697269872462,0,0.303298235083296,0,0,0,0,0.149254802886874,0.233713309847224,0,0.189403005275089,0,0,0,0.302461847526478,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0.320075189082423,0,0,0.368211900503681,0.139879507719444,0,0.127894371303652,0,0,0,0,0,0,0,0.318004350653419,0.23658523500376,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397832444232549,0,0.20170506870352,0,0,0,0,0,0,0,0,1.09394961803644,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0.354581522651905,0.111231401892069,0,0,0,0,0,0.47775168788705,0.142953088353313,0.316027223465453,0,0.173858272302579,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0.111855431797792,0.196300467230486,0.121917924982269,0,0,0,0,0.233939463462106,0,0.118920090777569,0.11294608203896,0.109940516745429,0,0.0771741581079447,0,0,0,0.471353094203252,0,0,0,0,0.0939839179798536,0,0.199882311849858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253397002022874,0,0.26721740526556,0.0918948995348449,0,0.151557396436479,0,0,0,0,0,0.322944549180031,0,0,0,0,0,0.34223330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| |||
|short_description=p4@SMG5 | |||
}} |
Latest revision as of 15:30, 17 September 2015
Short description: | p4@SMG5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SMG5_5end |
Coexpression cluster: | C1002_Mesenchymal_Whole_Smooth_Renal_osteosarcoma_Fibroblast_Reticulocytes |
Association with transcript: | 312bp_to_ENST00000468993_5end |
EntrezGene: | SMG5 |
HGNC: | 24644 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesangial cell | 2.40e-07 | 2 |
kidney interstitial cell | 2.40e-07 | 2 |
juxtaglomerular complex cell | 2.40e-07 | 2 |
renal interstitial pericyte | 2.40e-07 | 2 |
extraglomerular mesangial cell | 2.40e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 1.42e-40 | 15 |
haemolymphatic fluid | 1.42e-40 | 15 |
organism substance | 1.42e-40 | 15 |
abdomen connective tissue | 2.40e-07 | 2 |
abdominal segment connective tissue | 2.40e-07 | 2 |
trunk connective tissue | 2.40e-07 | 2 |
interstitial tissue | 2.40e-07 | 2 |
extraglomerular mesangium | 2.40e-07 | 2 |
kidney interstitium | 2.40e-07 | 2 |
juxtaglomerular apparatus | 2.40e-07 | 2 |
mesangium | 2.40e-07 | 2 |