FFCP PHASE1:Hg19::chr1:11863635..11863646,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4524 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7436 | |||
|TSSclassifier=strong | |||
|UniProt=P42898 | |||
|association_with_transcript=-64bp_to_ENST00000376583_5end | |||
|cluster_id=chr1:11863635..11863646,- | |||
|description=CAGE_peak_6_at_MTHFR_5end | |||
|id=chr1:11863635..11863646,- | |||
|ontology_enrichment_celltype=CL:0000557!1.39e-08!71;CL:0002009!2.77e-07!65;CL:0000839!6.63e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:1000497;5.74e-08;17!CL:0002518;5.74e-08;17!CL:1000507;5.86e-08;10!CL:1000494;5.86e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,4.36e-09,67;CL:1000497,1.81e-08,17;CL:0002518,1.81e-08,17;CL:1000507,2.17e-08,10;CL:1000494,2.17e-08,10;CL:0000763,3.70e-08,108;CL:0000049,3.70e-08,108;CL:0002009,2.70e-07,61;CL:0000839,8.38e-07,66 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.18e-12!216;UBERON:0002204!9.41e-08!167;UBERON:0002371!4.77e-07!80;UBERON:0002405!8.87e-07!115;UBERON:0002193!8.93e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;5.86e-08;10!UBERON:0009773;5.86e-08;10!UBERON:0001231;5.86e-08;10!UBERON:0004810;5.86e-08;10!UBERON:0006554;1.40e-07;30!UBERON:0001008;1.40e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,3.51e-09,203;UBERON:0004810,2.17e-08,10;UBERON:0000926,8.10e-08,315;UBERON:0004120,8.10e-08,315;UBERON:0006603,8.10e-08,315;UBERON:0003103,1.57e-07,68;UBERON:0006555,2.67e-07,16;UBERON:0004819,2.67e-07,16;UBERON:0002204,3.17e-07,167;UBERON:0002371,4.14e-07,76;UBERON:0002405,9.26e-07,93 | |||
|phase1_expression=0.363356758541113,0.428201047781966,0.140954404095971,1.0007329835313,0.893922188854576,0,0,0.631719873426831,0.261185628199839,0.737201809504527,2.79120467188971,1.31064823278103,0.263766978228454,0.990130823680373,0.331397375727916,0.672325146451775,1.20538905604795,0,0,0.246242116153576,0.204000691244253,0,0.286235987131057,0,0,0.305653622991805,0.246301768349837,0.157421562627358,0.393364276848904,0,1.23852898652861,0,0,0.739508020333575,0,0,0.293600439334847,0.553995408531877,0.401088894940283,0.434021741431704,2.23915474239924,1.6194683300949,1.80302897343931,1.01778767145695,0.755751887377619,0.485168122375632,0.232429036905685,0.411167888021826,0.619412741790207,0.28769239232215,2.81776777182011,1.18241114944293,0.689491361473237,1.93645405075148,1.35426486594342,1.69418105588344,1.36453075028923,0.449446968890169,0.612167784741805,1.28371610830437,0,2.30895910130701,3.98927315243264,2.13112375266347,0.580418477257168,0,0.622822248995575,2.51248665256743,1.5644487552606,1.95469960234605,0,0,0,0.845021145247767,1.27562579979026,0.419317291016752,1.23561494261145,1.65194582125657,0.48217676009124,1.42506371870624,1.19350006319454,0,1.75996244461323,0,0.889509253863555,0.853460445133014,0.400395987036012,0,0,0.954053754535364,0.569212969109448,0,0.382273228125229,1.32171328579026,0,1.05353633910031,0.196709770113833,0.393010762749165,0.411202997999018,1.00311897234407,0.32592226663359,0,0,0.111410456885174,0.294605907474837,0.221533894583621,0.541607727530031,0.384273959177026,0.130059347559878,0.164437904603676,0.276350017785848,0.289803085735052,0.444859689486181,1.07016331235885,0,0.226618685395132,0,0,0,0,0,0,0,0.255973222308837,0,0,0,0,0,0,7.31420598941885,1.34140171940727,0,0,0,0.289693037921647,0,1.45990461090791,0.189069634328136,0.221729397462564,0.702678285545008,0.327447688744282,0,0,0.649094787309367,0.522389211897802,0.398873881556595,0.238490624305342,0,0,0.198762407366705,1.72046919021225,1.04142150482278,0,1.25849830862972,0.550236083880135,0.626984899610432,1.29208379584664,0.71153252537342,0.33472061276467,1.61131726843659,0,1.22031028774085,0,1.62028389576352,0.625098097988558,0.673588117878509,1.12611480483322,0,1.89853131913626,0.916008719652036,0,0,0.872188104285069,0,0.12663051166458,0.529636723252875,2.58152958673932,0.354668382198357,0,1.06748995729705,0.49333509683432,0.933633106199299,0.404132016209064,0.326923806226917,0.454072282934794,0.576175924479999,0.937285727335186,0.312160076830321,0.570471821544449,0.298897361103602,0.469737994575059,0,0.140450806702248,0.408308342509787,0.737005903870608,0.929932030581889,1.18800285728205,0.247266929278557,1.82032272387605,0.718618141816238,1.17835279767846,0.750711119231785,0,0.438977620880838,0.30648779579902,0.300476117813194,0.226864366320042,1.25572744982203,0.640672166455702,0.847727604638247,0.600182192168805,0.309157587715317,1.8034837803194,1.11670113798954,0.843881661206331,0.389748020644795,2.77677151668526,0.460249493211497,0.484938170456436,1.77504796258307,0.705264687593482,0.67824236924195,0.966304265816484,0.545492241181669,0.860413786167011,0.487894824518382,0,0.232387885739037,0.725627385107593,0.252320850875628,0,0,1.28648187638577,0,0,0.721879481669586,0.236613600079688,0,0,0.110293972732394,0.217879444092406,0,0,0.196221465125346,0,1.4763109092493,0,1.2347220339942,1.47008711385542,0,0,0.590789906681404,0,0,0.514703430895577,0.658501712451753,0,0.301586917234893,0.740707561268237,2.28065813717227,2.07986957055916,0,0.34779121492523,0.234817388471643,0.433099343283221,1.38895653772983,0.951270761172991,0,0,0.984868024349589,0.234004265139238,0.148631162288728,0,0.16798212819886,0.283550194484773,0.0895585227028483,0,0.383382679165211,0.492663237895943,2.11316241631742,0.207328115540772,1.44119953416961,1.76739406796932,0.190493682876507,1.14596527667483,1.17217447210047,1.71072446022705,0.205654985406647,0.600686115687835,0.285826432630578,0.897048674762886,2.1798003441664,0.1466765716419,0.387815147273333,3.57656445851882,0.845302752556,0.797814349754612,1.04007436911366,0.257207374262142,0,0.532844358032199,0.714889968290738,2.17048642156577,0,0,0.355391948742546,0,0.301439377059586,0,0.099972991182057,1.2162378064119,1.00451418286425,0,0.479249710983165,0,0,0.289562613335158,0,0,0.112085143993527,0.591092280605782,0,0.513372145118994,0,0,0,0.167516265334349,0,0,0,0,1.59498939234882,0.500170521059677,1.08506009479894,0.207970861530807,0,0.157702415033935,0.117141414992713,0,0,1.03473071292505,0,0.553107505625109,1.39013783148933,3.13281851940385,2.74514739048685,0.413536052245775,0.215714200818617,0.853820462427555,0,0,0.30239029332968,0.248107807818777,0.306923946576125,0.561320188866147,0.896974044789907,0,0,0,0.154209693802656,0.177561725313127,0.246381468041427,0,0.232420756919918,0,0.200506470303285,0,0.574072240823034,0.546273504020151,0.393373244878272,3.15839729035188,0.847168708148562,4.70609861506113,2.92278449306521,0.211103257785751,0,0.850468526382578,0.863663664408557,0,1.35473218771926,2.50844886927427,1.52925763827023,1.66215201785745,1.56712328305525,0,0.261435451024901,1.28225062558195,0.328014645699706,0.976135183992909,0.515205058238611,0,0,0,0,0,0.676695028044854,0,0.307007349452259,0.551346289938122,1.18162269355101,1.0151168573996,0.426133137080504,0.356128142586949,0.165284915360978,0.384380134730212,0.638063562472921,0,0.464845549297286,1.25924938732256,0.6970372701606,0.616067160352178,1.06461206063404,1.73986598415015,0.18532421910392,0.143124886741991,1.48863347743867,0.632758849437452,1.33441135746677,1.79128453917934,1.71175595213568,0.95460974377781,0,0.359744915166629,1.92175920815238,0.706874414074119,0.404364963146632,0,0,0.975267478179181,0.487426979262569,1.05650146756755,1.50149902548784,0.707027159768564,3.39024349860728,0,0.66343897524122,0,0.578775534266688,1.31178950409327,0.202910376962704,0,0.281695602532241,0,0.785992328104969,0,0,0.633322905892992,0.987884678879706,0,1.39973888097993,0.288666338176536,1.34060455107157,0,1.22386941009813,1.29151611801369,1.68471475667626,0.443430153536676,1.37834040124176,0.507447609232169,0.764637207142375,0,0.238231775457789,0.411362273086194,0.648473311192717,1.08006287447623,0,0,0,0,0,0,0,0.318852545457645,0.199579371432817,0.191505370132367,0.635020748171649,0,0,0,0,0,0,0,0,0.425846237690326,0,0.307240764308458,0.223676107892416,0.333698283423817,0,0.278406173895242,1.23087398947712,1.35227839237992,0,0,0,0.879049075631364,0,0,0,0.47748896947538,0.593929361665277,2.76444631889309,0,0.140669416410513,1.55832187032068,0,0,1.39473591775749,0.276283915531148,0.251932747854276,0,0.369254416383208,0,0.449341755736634,0.358042349351218,1.53471711068062,1.57829449019094,0,0,0,0.371072392647405,1.99613798001194,0,0,2.17499872630438,0,0.762760950878299,0.236387681767936,0,0.291604613383254,0,0,0.964771509003264,0,0,0,0.438770794307945,0,0,1.07730361905316,0.113942055847001,0.46112780877612,0.359030577639089,0.325942115766024,0.638002319463839,0.366390373607449,0.533034776018635,0,0,0.831058409500782,3.15833924864053,1.9606253431774,3.02078856556517,0.569261198172555,1.11255605286265,0.843992258112108,0.326465616318295,0,0,0.995261931078505,0.353830258013357,1.22206028986725,0,0,0,0.269604531922708,0,0,0,0,0,0,1.20990716048664,0,1.95878396848313,0,0.103688191397247,0,0,0,0,0,0.138674673013139,0,0.0979923974143777,0.261177619741208,1.57254001417827,0.51595809741485,0.774050650312681,0.511625219603299,0.410577285266046,0.775912131907355,0.353024506766001,0.451961481561065,0,0,0.253243183823515,0.195551382734803,0.400794101257669,0.426905989478705,0.39961921916426,0,0,0,0,0.49701014226173,0.942776138467182,0.135904206073614,0.209205692624666,0,0.288950589901519,0,0.410716136675979,1.27746588066972,0,1.57732412567589,1.11712960508902,0.687481272035051,0.717873024576814,2.39614800598789,3.43380838509257,2.4548860318606,6.24806294126554,0.360299883542404,0,0,0,0.202210631562555,0,0.254019996197353,0,0.136203406111576,0,0,0,16.648067974811,4.6428117273477,0.182248669974074,0,0.394028536495991,1.15400093896996,0.105600336519406,0,0.575745591958336,1.42939065274673,5.95882773328889,0,0.542999601753713,0,0,0,0.574647645245373,0.340776043570843,0.453248366080503,0.293104467356165,2.65013777824443,0.258565912723101,0.26446520348538,0,0,0.961086713109252,1.10043013569766,0,0,0,0,0,0,0,0,0.327872630709804,0,0.886068179966986,0,0.1251909307065,0.573409195690071,0.443716206147409,0.372578417648301,0,0,0.454947352624943,0.285465333544967,0.941063278792687,0,0.28984205722165,0.298509605773748,0.467426619694449,1.10961172300523,0.378806010550178,0,0.889811221596536,0.228840068396924,0.907385542579434,0.310874401165561,0.295710299979268,0.159296767163702,0.899606224327209,0.465788870628778,0.829412415681711,0.797525143673985,0.521745061811734,0.901545653983311,0,0,0.181848659202559,0.644463342254931,0.928067519756987,0.796191777397232,0.800055529326307,0,0.673498977531838,0,0,0,0,0.453411851024545,0.231522474323834,0.244736704506468,0.179088841081487,0.308801447160972,0.219284049578707,0.706756583783524,0.38582807654183,0.168942440653073,0,0,0.607719912354764,0.553033744606923,0.974301544196942,7.97189041880179,2.9441770966052,0,1.2288645437686,0,0,0,0,0,0.368211900503681,0,0,0,0,0.157265941855896,0,0,0,0.123935764259002,0,0.318004350653419,0.23658523500376,0,0.705351887381368,0.6124909547064,0.321146125482298,0,0.159633859057151,0,0,0.414943514785307,0.322951291263702,1.42769420259154,0.196295437002051,0,0,0,0,0,1.79024599904647,4.06135773085989,0.60511520611056,0,0.523813388962845,0.327543835020193,0.443568258651136,0.405225507710368,0,0,0.380494861163441,0,0,0.992422356778588,0.175871244359621,0,1.07140367175657,0.672567444437648,1.82089681270989,0.682986574053893,0.532214220975833,0.345701962667338,0.171488009437418,0.203909198930495,0.197318320688547,0.118193840883968,0.222462803784138,1.33438257845874,0.314231179832004,0.280272163313789,0,1.72742072974897,7.16627531830575,0.929195074296532,0.158013611732727,0,0.173858272302579,1.60342272946051,0.207216164163037,0,0,0,0.828324005113957,0.0852134047591577,0,0.4582137370881,0.62041277132864,0.955538938977433,0.111855431797792,0,0,0.647428837187895,0.410651227424988,3.4794432940146,0.485710993059139,0,0,0.118920090777569,0,0.109940516745429,0,0.308696632431779,0.437119121007915,0,1.22574160876953,0,0.392616934229891,0.594092800654172,0,0,0.845855261818682,2.32048396704878,0.199882311849858,0,0,0.160482733378337,1.46067277649303,0.458729283404541,0.286679166302903,0,0.203974470572744,0,1.0580536810308,0.743990036333503,1.38652688589425,0,0.126166424835079,0.109265571963696,0,0.407955318967927,0,0.918948995348449,0.250707539292375,0.606229585745915,0.535928260312357,0,0.620597975171371,0.213233981900981,0.476128862927481,0.322944549180031,0.558672428662721,1.23345048838675,0.445530107947154,0.202117188958219,0.217716747896961,0,0.5388164241167,0.358611026963382,0.332660356546013,0.0814032686109745,0.106727345877715,0,0,2.34640942403454,1.34465588601153,0.813792356631477,2.66302709674205,1.00636896795513,0 | |||
|short_description=p6@MTHFR | |||
}} |
Latest revision as of 10:57, 16 September 2015
Short description: | p6@MTHFR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_MTHFR_5end |
Coexpression cluster: | NA |
Association with transcript: | -64bp_to_ENST00000376583_5end |
EntrezGene: | MTHFR |
HGNC: | 7436 |
UniProt: | P42898 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 4.36e-09 | 67 |
kidney cell | 1.81e-08 | 17 |
kidney epithelial cell | 1.81e-08 | 17 |
kidney tubule cell | 2.17e-08 | 10 |
nephron tubule epithelial cell | 2.17e-08 | 10 |
myeloid cell | 3.70e-08 | 108 |
common myeloid progenitor | 3.70e-08 | 108 |
macrophage dendritic cell progenitor | 2.70e-07 | 61 |
myeloid lineage restricted progenitor cell | 8.38e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 3.51e-09 | 203 |
nephron tubule epithelium | 2.17e-08 | 10 |
mesoderm | 8.10e-08 | 315 |
mesoderm-derived structure | 8.10e-08 | 315 |
presumptive mesoderm | 8.10e-08 | 315 |
compound organ | 1.57e-07 | 68 |
excretory tube | 2.67e-07 | 16 |
kidney epithelium | 2.67e-07 | 16 |
musculoskeletal system | 3.17e-07 | 167 |
bone marrow | 4.14e-07 | 76 |
immune system | 9.26e-07 | 93 |