FFCP PHASE1:Hg19::chr1:115301235..115301248,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7812 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29905 | |||
|TSSclassifier=strong | |||
|UniProt=E9PKN4 | |||
|association_with_transcript=48bp_to_ENST00000525878_5end | |||
|cluster_id=chr1:115301235..115301248,- | |||
|description=CAGE_peak_39_at_CSDE1_5end | |||
|id=chr1:115301235..115301248,- | |||
|ontology_enrichment_celltype=CL:0000066!8.05e-14!254;CL:0000223!1.07e-08!59;CL:0002076!3.41e-08!43;CL:0002139!4.61e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0002621;1.59e-21;3!CL:1001319;1.41e-16;1!CL:1000600;1.41e-16;1!CL:0000312;3.65e-13;5!CL:0000240;3.95e-11;6!CL:0000311;3.95e-11;6!CL:0000079;3.95e-11;6!CL:0000237;3.95e-11;6!CL:0002159;2.03e-10;14!CL:0000362;1.02e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002621,1.05e-21,3;CL:1001319,6.47e-17,1;CL:1000600,6.47e-17,1;CL:0000312,4.96e-13,5;CL:0000240,5.09e-11,6;CL:0000311,5.09e-11,6;CL:0000079,5.09e-11,6;CL:0000237,5.09e-11,6;CL:0000036,5.09e-11,6;CL:0000357,5.09e-11,6;CL:0000114,5.09e-11,6;CL:0002159,2.24e-10,14;CL:0000362,1.20e-07,9;CL:0000066,1.37e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000357;3.95e-11;6!CL:0000114;3.95e-11;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4929;5.93e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4929,4.70e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0002394!4.61e-07!4;UBERON:0003928!4.61e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;1.59e-21;3!UBERON:0003350;6.62e-18;8!UBERON:0001828;6.62e-18;8!UBERON:0004645;1.41e-16;1!UBERON:0004913;1.41e-16;1!UBERON:0003703;1.41e-16;1!UBERON:0001256;1.41e-16;1!UBERON:0001259;1.41e-16;1!UBERON:0001174;1.41e-16;1!UBERON:0004914;1.41e-16;1!UBERON:0002394;3.32e-16;4!UBERON:0003928;3.32e-16;4!UBERON:0000344;1.40e-12;20!UBERON:0000486;3.73e-12;12!UBERON:0003729;2.88e-11;13!UBERON:0003929;8.71e-10;7!UBERON:0002294;1.13e-09;7!UBERON:0001173;1.13e-09;7!UBERON:0001255;5.93e-09;2!UBERON:0001556;5.93e-09;2!UBERON:0010371;1.77e-08;31!UBERON:0000161;6.94e-08;19!UBERON:0000166;6.94e-08;19!UBERON:0000058;4.95e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.05e-21,3;UBERON:0003350,3.94e-18,8;UBERON:0001828,5.91e-18,8;UBERON:0004645,6.47e-17,1;UBERON:0001256,6.47e-17,1;UBERON:0001259,6.47e-17,1;UBERON:0004913,8.86e-17,1;UBERON:0003703,8.86e-17,1;UBERON:0001174,8.86e-17,1;UBERON:0004914,8.86e-17,1;UBERON:0000344,1.13e-12,20;UBERON:0003729,2.69e-11,13;UBERON:0002394,3.39e-11,6;UBERON:0003928,3.39e-11,6;UBERON:0000161,1.11e-10,36;UBERON:0003929,5.75e-10,54;UBERON:0003102,3.14e-09,99;UBERON:0001255,4.02e-09,2;UBERON:0001556,4.02e-09,2;UBERON:0005911,1.05e-08,82;UBERON:0002294,9.20e-08,9;UBERON:0001173,9.20e-08,9;UBERON:0004912,9.20e-08,9;UBERON:0000166,6.75e-07,22;UBERON:0008835,7.94e-07,22;UBERON:0003894,7.94e-07,22 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0.273748850145768,0,0,0,0,0,0,0,0,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0.795285947051099,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0.419499436209906,0.275118041940067,0.208994966536811,0.258416759169329,0.35576626268671,0.66944122552934,0,3.04108842287405,0.732186172644509,0,0,0,0.22452937262617,0.112611480483322,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0.117434498643765,0,0,0,0,0,1.18800285728205,0,0,0,0,0,0,0,0,0.150238058906597,0,0.179389635688862,0,0,0,0.103052529238439,0,0,0,0.0974370051611986,0.504867548488229,0,0,0,0,0,0.57978255948989,1.90922284413584,2.29443676311203,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.337169380156203,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0.122988438543114,0,1.20725313949488,1.1240175325762,0.100528972411631,0.370353780634118,0,0,0,0.115930404975077,0,0.288732895522148,0.462985512576611,0,0,0,0,0.234004265139238,0.148631162288728,0,1.51183915378974,0.850650583454319,0.53735113621709,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.299918973546171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0.184369168541703,0.173767228936166,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0.256278298511402,0,0,0,0.154209693802656,0,0,0,0.116210378459959,0,0.601519410909855,1.01289087829486,0,0,0,0,0.231046011313244,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0.183138929636687,0.247528499761764,0,0,0,0.096670718292122,0,0,0,0,0,0,0.0890320356467374,0.165284915360978,0.384380134730212,0.382838137483752,0.30347334256665,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0,0.35667105148125,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0,0.222617410045812,0,0,0,0,0,0,0,0,0.718946809178615,1.43216939740487,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0.341826167541004,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0.450970258243478,0.207376382794494,0,0,0,0,0.853828638089378,0,0.347119476670262,0.195984794828755,0,0,0,0.19351266257817,0.146178634172371,0,0.387956065953678,0,0,0.685209623233754,0.19871461170299,0,0,0.400794101257669,0,0.39961921916426,0,0,0,1.4405479798815,0.124252535565433,0.471388069233591,0,0.104602846312333,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0.0787831823072236,0.164831716762333,0.0674035438541849,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.653174720218818,0,0.082092520749339,0.511164065356265,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0.544017803369474,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0.124980407962107,0.454947352624943,0.570930667089935,0.235265819698172,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0.147855149989634,0.318593534327405,0,0.155262956876259,0,0,0,0.150257608997218,0,0.406870733204662,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0.179088841081487,0.308801447160972,0,0.353378291891762,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0.419638523158333,0,0,0.215649622793364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0,0,0,0.198916222116275,0,0.20170506870352,0,0,0.163771917510097,1.77427303460454,0,0,0,0,0,0.548257766857182,0,0.351742488719241,0,0,0,0.606965604236632,0,0,0,0,0.0679697329768317,0,0,0.333694205676207,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0.62164849248911,0,0,0,0,0,0,0,0,0,0,0.294450700845729,0.243835849964539,0,0,0,0,0,0.198950775161368,0,0.5647304101948,0,0,0.0771741581079447,0,0.470317296361523,0,0,0,0,0,0,0.0939839179798536,0,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250707539292375,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0.286888821570705,0,1.95367844666339,0,0,0.0898252021065869,0,0.122241444182866,0,0,0,0 | |||
|short_description=p39@CSDE1 | |||
}} |
Latest revision as of 07:29, 16 September 2015
Short description: | p39@CSDE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_39_at_CSDE1_5end |
Coexpression cluster: | NA |
Association with transcript: | 48bp_to_ENST00000525878_5end |
EntrezGene: | CSDE1 |
HGNC: | 29905 |
UniProt: | E9PKN4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 1.05e-21 | 3 |
bladder cell | 6.47e-17 | 1 |
lower urinary tract cell | 6.47e-17 | 1 |
keratinocyte | 4.96e-13 | 5 |
stratified squamous epithelial cell | 5.09e-11 | 6 |
keratin accumulating cell | 5.09e-11 | 6 |
stratified epithelial cell | 5.09e-11 | 6 |
keratinizing barrier epithelial cell | 5.09e-11 | 6 |
epithelial fate stem cell | 5.09e-11 | 6 |
stratified epithelial stem cell | 5.09e-11 | 6 |
surface ectodermal cell | 5.09e-11 | 6 |
general ecto-epithelial cell | 2.24e-10 | 14 |
epidermal cell | 1.20e-07 | 9 |
epithelial cell | 1.37e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.05e-21 | 3 |
epithelium of mucosa | 3.94e-18 | 8 |
gingiva | 5.91e-18 | 8 |
urinary bladder urothelium | 6.47e-17 | 1 |
wall of urinary bladder | 6.47e-17 | 1 |
mucosa of urinary bladder | 6.47e-17 | 1 |
hepatopancreatic ampulla | 8.86e-17 | 1 |
extrahepatic bile duct | 8.86e-17 | 1 |
common bile duct | 8.86e-17 | 1 |
duodenal papilla | 8.86e-17 | 1 |
mucosa | 1.13e-12 | 20 |
mouth mucosa | 2.69e-11 | 13 |
bile duct | 3.39e-11 | 6 |
digestive system duct | 3.39e-11 | 6 |
orifice | 1.11e-10 | 36 |
gut epithelium | 5.75e-10 | 54 |
surface structure | 3.14e-09 | 99 |
urinary bladder | 4.02e-09 | 2 |
lower urinary tract | 4.02e-09 | 2 |
endo-epithelium | 1.05e-08 | 82 |
biliary system | 9.20e-08 | 9 |
biliary tree | 9.20e-08 | 9 |
biliary bud | 9.20e-08 | 9 |
oral opening | 6.75e-07 | 22 |
hepatic diverticulum | 7.94e-07 | 22 |
liver primordium | 7.94e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 4.70e-09 | 2 |