FFCP PHASE1:Hg19::chr19:56165903..56165978,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11338 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23156 | |||
|TSSclassifier=strong | |||
|UniProt=P26368 | |||
|association_with_transcript=487bp_to_ENST00000308924,ENST00000450554,NM_001012478,NM_007279,uc002qlt.2,uc002qlu.2_5end | |||
|cluster_id=chr19:56165903..56165978,+ | |||
|description=CAGE_peak_3_at_U2AF2_5end | |||
|id=chr19:56165903..56165978,+ | |||
|ontology_enrichment_celltype=CL:0002371!2.19e-13!591;CL:0000055!1.96e-11!180;CL:0000144!1.28e-10!625;CL:0000222!8.21e-10!119;CL:0000034!8.28e-10!444;CL:0000048!8.42e-10!430;CL:0000723!1.03e-09!436;CL:0000003!2.58e-09!722;CL:0000183!3.98e-09!59;CL:0000548!5.29e-09!679;CL:0000004!5.29e-09!679;CL:0000255!5.29e-09!679;CL:0000115!9.11e-09!35;CL:0000012!1.05e-08!682;CL:0000680!2.49e-08!57;CL:0000056!2.49e-08!57;CL:0000355!2.49e-08!57;CL:0000187!1.75e-07!54;CL:0002078!4.37e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:0000115;2.64e-08;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.37e-10,121;CL:0000034,2.31e-09,441;CL:0000048,2.54e-09,427;CL:0000723,2.85e-09,433;CL:0000115,3.49e-09,36;CL:0000680,2.26e-08,58;CL:0000056,2.26e-08,58;CL:0000355,2.26e-08,58;CL:0000187,1.59e-07,55;CL:0002078,1.64e-07,45 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1240!4.10e-08!39;DOID:8692!6.24e-08!31;DOID:2531!1.25e-07!51;DOID:0060083!1.25e-07!51 | |||
|ontology_enrichment_disease_v019=DOID:8692;8.44e-08;31 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,4.65e-08,39;DOID:8692,5.92e-08,31;DOID:2531,1.57e-07,51;DOID:0060083,1.57e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0002049!5.90e-13!79;UBERON:0007798!5.90e-13!79;UBERON:0004535!7.02e-11!110;UBERON:0001009!2.50e-10!113;UBERON:0000055!3.34e-10!69;UBERON:0001981!1.92e-08!60;UBERON:0007500!1.92e-08!60;UBERON:0004537!1.92e-08!60;UBERON:0006965!1.92e-08!60;UBERON:0004290!2.64e-07!70;UBERON:0001637!4.19e-07!42;UBERON:0003509!4.19e-07!42;UBERON:0004572!4.19e-07!42;UBERON:0000914!5.15e-07!83;UBERON:0002329!5.15e-07!83;UBERON:0003077!5.15e-07!83;UBERON:0003059!5.15e-07!83;UBERON:0007282!5.15e-07!83;UBERON:0009618!5.15e-07!83;UBERON:0007285!5.15e-07!83;UBERON:0003914!6.72e-07!118 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,1.32e-13,78;UBERON:0007798,1.32e-13,78;UBERON:0004535,1.81e-11,109;UBERON:0001009,6.88e-11,112;UBERON:0000055,8.53e-11,68;UBERON:0007503,1.10e-09,78;UBERON:0007500,5.28e-09,59;UBERON:0001981,5.28e-09,59;UBERON:0004537,5.28e-09,59;UBERON:0006965,5.28e-09,59;UBERON:0002329,2.80e-07,71;UBERON:0003059,2.80e-07,71;UBERON:0007282,2.80e-07,71;UBERON:0004290,2.80e-07,71;UBERON:0009618,2.80e-07,71;UBERON:0004872,3.09e-07,83;UBERON:0001637,3.65e-07,42;UBERON:0003509,3.65e-07,42;UBERON:0004572,3.65e-07,42;UBERON:0007524,5.45e-07,73;UBERON:0003914,5.95e-07,117;UBERON:0003077,8.24e-07,72;UBERON:0007285,8.24e-07,72 | |||
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| |||
|short_description=p3@U2AF2 | |||
}} |
Latest revision as of 03:06, 20 September 2015
Short description: | p3@U2AF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_U2AF2_5end |
Coexpression cluster: | NA |
Association with transcript: | 487bp_to_ENST00000308924, ENST00000450554, NM_001012478, NM_007279, uc002qlt.2, uc002qlu.2_5end |
EntrezGene: | U2AF2 |
HGNC: | 23156 |
UniProt: | P26368 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.37e-10 | 121 |
stem cell | 2.31e-09 | 441 |
multi fate stem cell | 2.54e-09 | 427 |
somatic stem cell | 2.85e-09 | 433 |
endothelial cell | 3.49e-09 | 36 |
muscle precursor cell | 2.26e-08 | 58 |
myoblast | 2.26e-08 | 58 |
multi-potent skeletal muscle stem cell | 2.26e-08 | 58 |
muscle cell | 1.59e-07 | 55 |
meso-epithelial cell | 1.64e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
vasculature | 1.32e-13 | 78 |
vascular system | 1.32e-13 | 78 |
cardiovascular system | 1.81e-11 | 109 |
circulatory system | 6.88e-11 | 112 |
vessel | 8.53e-11 | 68 |
epithelial vesicle | 1.10e-09 | 78 |
epithelial tube open at both ends | 5.28e-09 | 59 |
blood vessel | 5.28e-09 | 59 |
blood vasculature | 5.28e-09 | 59 |
vascular cord | 5.28e-09 | 59 |
somite | 2.80e-07 | 71 |
presomitic mesoderm | 2.80e-07 | 71 |
presumptive segmental plate | 2.80e-07 | 71 |
dermomyotome | 2.80e-07 | 71 |
trunk paraxial mesoderm | 2.80e-07 | 71 |
splanchnic layer of lateral plate mesoderm | 3.09e-07 | 83 |
artery | 3.65e-07 | 42 |
arterial blood vessel | 3.65e-07 | 42 |
arterial system | 3.65e-07 | 42 |
dense mesenchyme tissue | 5.45e-07 | 73 |
epithelial tube | 5.95e-07 | 117 |
paraxial mesoderm | 8.24e-07 | 72 |
presumptive paraxial mesoderm | 8.24e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
leukemia | 4.65e-08 | 39 |
myeloid leukemia | 5.92e-08 | 31 |
hematologic cancer | 1.57e-07 | 51 |
immune system cancer | 1.57e-07 | 51 |