FFCP PHASE1:Hg19::chr19:56039984..56039996,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr19:56039984..56039996,- | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_at_chr19:56039984..56039996,- | |||
|id=chr19:56039984..56039996,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000333;9.55e-17;5!CL:0000650;3.34e-11;2!CL:1000500;3.34e-11;2!CL:1000618;3.34e-11;2!CL:1001318;3.34e-11;2!CL:0002173;3.34e-11;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000650,4.52e-11,2;CL:1000500,4.52e-11,2;CL:1000618,4.52e-11,2;CL:1001318,4.52e-11,2;CL:0002173,4.52e-11,2 | |||
|ontology_enrichment_development_v019=UBERON:0006215;4.45e-60;3 | |||
|ontology_enrichment_disease=DOID:171!1.70e-09!10;DOID:3095!6.48e-09!22;DOID:2994!6.48e-09!22;DOID:169!7.20e-09!6;DOID:3093!6.15e-07!11 | |||
|ontology_enrichment_disease_v019=DOID:169;3.97e-14;6!DOID:3307;1.82e-11;2!DOID:3193;3.34e-11;2!DOID:962;3.34e-11;2!DOID:171;7.36e-09;10!DOID:3095;8.70e-09;22!DOID:2994;8.70e-09;22!DOID:1192;6.78e-08;3!DOID:3093;1.57e-07;11 | |||
|ontology_enrichment_disease_v019_2=DOID:169,3.48e-14,6;DOID:3307,1.82e-11,2;DOID:3193,2.73e-11,2;DOID:962,2.73e-11,2;DOID:171,6.80e-09,10;DOID:3095,8.25e-09,22;DOID:2994,8.25e-09,22;DOID:1192,5.93e-08,3;DOID:3093,1.42e-07,11 | |||
|ontology_enrichment_uberon=UBERON:0000013!8.96e-11!5;UBERON:0002410!8.96e-11!5;UBERON:0000955!8.35e-08!69;UBERON:0006238!8.35e-08!69;UBERON:0000073!9.31e-08!94;UBERON:0001016!9.31e-08!94;UBERON:0004733!6.85e-07!12;UBERON:0002028!6.85e-07!12;UBERON:0007277!6.85e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;1.68e-30;6!UBERON:0002680;1.33e-20;9!UBERON:0001895;1.33e-20;9!UBERON:0000013;9.55e-17;5!UBERON:0002410;9.55e-17;5!UBERON:0004733;1.23e-15;12!UBERON:0002028;1.23e-15;12!UBERON:0004732;1.73e-14;13!UBERON:0003714;3.34e-11;2!UBERON:0003567;3.34e-11;2!UBERON:0003838;3.34e-11;2!UBERON:0003586;3.34e-11;2!UBERON:0005169;3.34e-11;2!UBERON:0002321;3.34e-11;2!UBERON:0005215;3.34e-11;2!UBERON:0002303;3.34e-11;2!UBERON:0002319;3.34e-11;2!UBERON:0000010;9.65e-10;8!UBERON:0001016;3.30e-08;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.25e-30,6;UBERON:0006215,1.25e-30,6;UBERON:0002680,1.09e-20,9;UBERON:0001895,1.09e-20,9;UBERON:0010092,1.09e-20,9;UBERON:0000013,8.14e-17,5;UBERON:0002410,8.14e-17,5;UBERON:0004733,1.06e-15,12;UBERON:0002028,1.06e-15,12;UBERON:0007277,1.06e-15,12;UBERON:0004732,1.51e-14,13;UBERON:0003076,1.06e-12,15;UBERON:0003057,1.06e-12,15;UBERON:0003714,2.73e-11,2;UBERON:0003567,4.52e-11,2;UBERON:0003838,4.52e-11,2;UBERON:0003586,4.52e-11,2;UBERON:0005169,4.52e-11,2;UBERON:0002321,4.52e-11,2;UBERON:0005215,4.52e-11,2;UBERON:0002303,4.52e-11,2;UBERON:0002319,4.52e-11,2;UBERON:0000010,8.84e-10,8;UBERON:0001016,1.03e-07,89 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.495065411840187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0.790513071238134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0.397227542439656,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0.161872944368132,0.140450806702248,0,0.245668634623536,0,0,0,0,0,0,0.250237039743928,0,0,0,0,0,0.179389635688862,0,0,0,0.103052529238439,0,0,0.168776332241266,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0.43596006883328,0,0.387815147273333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462629081407967,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0.812839312631559,1.00337954770971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0.15350367472613,1.10269257987624,0,0,0.426133137080504,0.0890320356467374,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0.286822704408103,0.0982490410131212,0,0.354761064070598,0,0.329294892959902,0.379473173765715,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0.994147647766298,0,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0.0927680981618513,0,0.520855522170466,0,0,0,0,0,0,0,0.694499979733169,0,0,3.05163472634166,4.09143261745531,1.77328571372128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0.317873157960757,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,1.05226393590145,0,0,0,0,0,0,0,0.347119476670262,0,0,0,0,0,0,0.0821154570532092,0,0,0,0,0,0.0633107959558787,0,0.0801588202515337,0,0,0.144090417154106,0,0,0,0,0,0.271808412147228,0.104602846312333,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0.18628920882415,1.38348634936231,0.124980407962107,0,0,0,0,0,0.149254802886874,0.467426619694449,0,0.378806010550178,0,0,0,0.302461847526478,0.15543720058278,0,0,0,0.310525913752519,0,0,0,0.150257608997218,0,0,0.181848659202559,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0.76736622782191,1.29389773676018,0.314531883711793,0.764467467344097,0,0.637724760305049,0,1.67593475391973,0,0,0.80057074828547,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0.351742488719241,0,0,0,0,0,0,0.115233987555779,0,0.0679697329768317,0.0657727735628491,0,0.667388411352415,0,0.157115589916002,0,0,0,0,0,0.316027223465453,0.23248285073625,0.347716544605159,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0.485710993059139,0.233939463462106,0.596852325484105,0,0,0.989464650708862,0.150962843566674,0,0,0.470317296361523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0.126166424835079,0.437062287854782,0.380095503034311,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0.0814032686109745,0,5.7921684686082,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p@chr19:56039984..56039996,- | |||
}} |
Latest revision as of 17:32, 27 July 2015
Short description: | p@chr19:56039984..56039996, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:56039984..56039996, - |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesangial cell | 4.52e-11 | 2 |
kidney interstitial cell | 4.52e-11 | 2 |
juxtaglomerular complex cell | 4.52e-11 | 2 |
renal interstitial pericyte | 4.52e-11 | 2 |
extraglomerular mesangial cell | 4.52e-11 | 2 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 1.25e-30 | 6 |
rhombic lip | 1.25e-30 | 6 |
regional part of metencephalon | 1.09e-20 | 9 |
metencephalon | 1.09e-20 | 9 |
future metencephalon | 1.09e-20 | 9 |
sympathetic nervous system | 8.14e-17 | 5 |
autonomic nervous system | 8.14e-17 | 5 |
segmental subdivision of hindbrain | 1.06e-15 | 12 |
hindbrain | 1.06e-15 | 12 |
presumptive hindbrain | 1.06e-15 | 12 |
segmental subdivision of nervous system | 1.51e-14 | 13 |
posterior neural tube | 1.06e-12 | 15 |
chordal neural plate | 1.06e-12 | 15 |
neural tissue | 2.73e-11 | 2 |
abdomen connective tissue | 4.52e-11 | 2 |
abdominal segment connective tissue | 4.52e-11 | 2 |
trunk connective tissue | 4.52e-11 | 2 |
interstitial tissue | 4.52e-11 | 2 |
extraglomerular mesangium | 4.52e-11 | 2 |
kidney interstitium | 4.52e-11 | 2 |
juxtaglomerular apparatus | 4.52e-11 | 2 |
mesangium | 4.52e-11 | 2 |
peripheral nervous system | 8.84e-10 | 8 |
nervous system | 1.03e-07 | 89 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 3.48e-14 | 6 |
teratoma | 1.82e-11 | 2 |
peripheral nerve sheath neoplasm | 2.73e-11 | 2 |
neurofibroma | 2.73e-11 | 2 |
neuroectodermal tumor | 6.80e-09 | 10 |
germ cell and embryonal cancer | 8.25e-09 | 22 |
germ cell cancer | 8.25e-09 | 22 |
peripheral nervous system neoplasm | 5.93e-08 | 3 |
nervous system cancer | 1.42e-07 | 11 |