FFCP PHASE1:Hg19::chr19:55417469..55417480,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9437 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6731 | |||
|TSSclassifier=strong | |||
|UniProt=O76036,B0V3L5,B0V3L2,B0V3L4,B0V3L0 | |||
|association_with_transcript=-27bp_to_ENST00000291890,ENST00000338835,ENST00000350790,ENST00000357397,ENST00000447255,NM_001145457,NM_001145458,NM_001242356,NM_001242357,NM_004829,uc002qib.2,uc002qic.2,uc002qid.2,uc002qie.2,uc002qif.2,uc010esj.2_5end | |||
|cluster_id=chr19:55417469..55417480,+ | |||
|coexpression_cluster_id=C1593 | |||
|description=CAGE_peak_2_at_NCR1_5end | |||
|id=chr19:55417469..55417480,+ | |||
|ontology_enrichment_celltype=CL:0000625!2.23e-26!11;CL:0000084!8.18e-23!25;CL:0000827!8.18e-23!25;CL:0000791!1.63e-21!18;CL:0000789!1.63e-21!18;CL:0002420!1.63e-21!18;CL:0002419!1.63e-21!18;CL:0000790!1.63e-21!18;CL:0000838!3.41e-20!52;CL:0000542!1.08e-19!53;CL:0000051!1.08e-19!53;CL:0000988!2.36e-19!182;CL:0000738!7.93e-19!140;CL:0002087!2.73e-18!119;CL:0000037!1.78e-17!172;CL:0000566!1.78e-17!172;CL:0000080!2.23e-16!6;CL:0002032!2.16e-15!165;CL:0000837!2.16e-15!165;CL:0002031!1.06e-14!124;CL:0000623!1.18e-09!3;CL:0000825!1.18e-09!3;CL:0000767!3.32e-09!3;CL:0000842!1.53e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0000623;6.72e-24;3!CL:0000767;9.48e-23;3!CL:0002393;1.67e-11;6!CL:0002397;1.67e-11;6!CL:0000081;4.87e-11;11!CL:0002127;3.06e-09;1!CL:0000911;3.06e-09;1!CL:0000814;3.06e-09;1!CL:0000094;7.07e-09;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000623,5.79e-24,3;CL:0000825,5.79e-24,3;CL:0000767,1.03e-22,3;CL:0000988,4.46e-13,177;CL:0000081,4.75e-11,11;CL:0000037,1.75e-09,168;CL:0000738,2.03e-09,136;CL:0002127,3.06e-09,1;CL:0000914,3.06e-09,1;CL:0000911,3.06e-09,1;CL:0000814,3.06e-09,1;CL:0002042,3.06e-09,1;CL:0002039,3.06e-09,1;CL:0002040,3.06e-09,1;CL:0002041,3.06e-09,1;CL:0000094,7.27e-09,8;CL:0002032,1.06e-08,161;CL:0000837,1.06e-08,161;CL:0002393,8.30e-08,9;CL:0002397,8.30e-08,9;CL:0002087,3.82e-07,115 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!4.48e-33!15;UBERON:0000179!4.48e-33!15;UBERON:0000463!4.48e-33!15;UBERON:0002390!7.82e-15!102;UBERON:0003061!7.82e-15!102;UBERON:0002193!6.27e-14!112;UBERON:0004177!1.17e-08!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.52e-39;15!UBERON:0000179;7.52e-39;15!UBERON:0000463;7.52e-39;15!UBERON:0002390;1.61e-16;32!UBERON:0002193;5.16e-09;42!UBERON:0002171;1.27e-08;1!UBERON:0006518;1.27e-08;1!UBERON:0008949;1.27e-08;1!UBERON:0000101;1.27e-08;1!UBERON:0002167;1.27e-08;1!UBERON:0002331;1.92e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,5.42e-39,15;UBERON:0000179,5.42e-39,15;UBERON:0000463,5.42e-39,15;UBERON:0002390,4.09e-12,98;UBERON:0003061,4.09e-12,98;UBERON:0002193,9.14e-11,108;UBERON:0002171,1.53e-08,1;UBERON:0006518,1.53e-08,1;UBERON:0008949,1.53e-08,1;UBERON:0000101,1.53e-08,1;UBERON:0002167,1.53e-08,1;UBERON:0002331,1.86e-07,10;UBERON:0000358,1.86e-07,10;UBERON:0000307,1.86e-07,10;UBERON:0000091,1.86e-07,10;UBERON:0000087,1.86e-07,10;UBERON:0007010,1.86e-07,10;UBERON:0007806,1.86e-07,10;UBERON:0008780,1.86e-07,10;UBERON:0005728,1.86e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.164201178899891,0.157421562627358,2.36018566109342,1.15148819429164,1.54816123316076,0,0,0,0,0,0,1.10799081706375,1.20326668482085,1.73608696572681,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0.344745680736619,0,0,0.188242339542605,0,0,1.53041946185451,0.962787081228281,0,0,0,0,0.580418477257168,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0.167186495390678,0,0,0,0.222820913770347,0,0,0.812411591295047,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0.651083453856419,0.950452044448374,0.752875595388864,0.639933055772092,1.24930726552346,0.473554504088034,0.821127996921047,0.403213486449465,0.534880391567015,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.38008691168931,4.72873824484625,3.66566877261179,4.62034930607094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.431428401637234,1.921096040462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,2.02979043692868,1.52927441428475,0.569647187174163,0.476463550915578,1.64544909234478,0,1.08006287447623,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08182271390393,0.33307196799782,1.4098700508785,0,0,0,0.111443384277478,0,0,0,0,0,0,0,4.44970460412251,0,0,0.276283915531148,0,0,0.123084805461069,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0.46112780877612,0,0,0,0,0,0,0,0.166211681900156,0,0,0,0,0,0,0,0,0,0,0,0,2.96521128680622,4.4483018020741,2.71497068714184,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31443677139657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0.314408610199332,1.24271716604159,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0.554805861502613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40341013740704,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.563903507879121,0.257831551894309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@NCR1 | |||
}} |
Latest revision as of 23:18, 19 September 2015
Short description: | p2@NCR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NCR1_5end |
Coexpression cluster: | C1593_anaplastic_NK_blood_Natural_CD8_Whole_adult |
Association with transcript: | -27bp_to_ENST00000291890, ENST00000338835, ENST00000350790, ENST00000357397, ENST00000447255, NM_001145457, NM_001145458, NM_001242356, NM_001242357, NM_004829, uc002qib.2, uc002qic.2, uc002qid.2, uc002qie.2, uc002qif.2, uc010esj.2_5end |
EntrezGene: | NCR1 |
HGNC: | 6731 |
UniProt: | O76036B0V3L5B0V3L2B0V3L4B0V3L0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
natural killer cell | 5.79e-24 | 3 |
pro-NK cell | 5.79e-24 | 3 |
basophil | 1.03e-22 | 3 |
hematopoietic cell | 4.46e-13 | 177 |
blood cell | 4.75e-11 | 11 |
hematopoietic stem cell | 1.75e-09 | 168 |
leukocyte | 2.03e-09 | 136 |
innate effector T cell | 3.06e-09 | 1 |
immature NK T cell | 3.06e-09 | 1 |
effector T cell | 3.06e-09 | 1 |
mature NK T cell | 3.06e-09 | 1 |
immature NK T cell stage IV | 3.06e-09 | 1 |
immature NK T cell stage I | 3.06e-09 | 1 |
immature NK T cell stage II | 3.06e-09 | 1 |
immature NK T cell stage III | 3.06e-09 | 1 |
granulocyte | 7.27e-09 | 8 |
hematopoietic oligopotent progenitor cell | 1.06e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.06e-08 | 161 |
intermediate monocyte | 8.30e-08 | 9 |
CD14-positive, CD16-positive monocyte | 8.30e-08 | 9 |
nongranular leukocyte | 3.82e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
blood | 5.42e-39 | 15 |
haemolymphatic fluid | 5.42e-39 | 15 |
organism substance | 5.42e-39 | 15 |
hematopoietic system | 4.09e-12 | 98 |
blood island | 4.09e-12 | 98 |
hemolymphoid system | 9.14e-11 | 108 |
lower lobe of right lung | 1.53e-08 | 1 |
right lung lobe | 1.53e-08 | 1 |
lower lobe of lung | 1.53e-08 | 1 |
lobe of lung | 1.53e-08 | 1 |
right lung | 1.53e-08 | 1 |
umbilical cord | 1.86e-07 | 10 |
blastocyst | 1.86e-07 | 10 |
blastula | 1.86e-07 | 10 |
bilaminar disc | 1.86e-07 | 10 |
inner cell mass | 1.86e-07 | 10 |
cleaving embryo | 1.86e-07 | 10 |
connecting stalk | 1.86e-07 | 10 |
inner cell mass derived epiblast | 1.86e-07 | 10 |
extraembryonic mesoderm | 1.86e-07 | 10 |