FFCP PHASE1:Hg19::chr19:54711608..54711620,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6203 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=10442 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-93bp_to_BC020462_5end | |||
|cluster_id=chr19:54711608..54711620,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_10_at_RPS9_5end | |||
|id=chr19:54711608..54711620,- | |||
|ontology_enrichment_celltype=CL:0002057!2.57e-65!42;CL:0000860!2.05e-60!45;CL:0000766!1.62e-54!76;CL:0002009!2.79e-47!65;CL:0002194!7.27e-46!63;CL:0000576!7.27e-46!63;CL:0000040!7.27e-46!63;CL:0000559!7.27e-46!63;CL:0000557!1.44e-45!71;CL:0000839!2.10e-43!70;CL:0000763!4.14e-36!112;CL:0000049!4.14e-36!112;CL:0000738!6.76e-36!140;CL:0002087!6.20e-29!119;CL:0000037!2.98e-27!172;CL:0000566!2.98e-27!172;CL:0002031!1.12e-25!124;CL:0000988!3.58e-25!182;CL:0002032!3.46e-24!165;CL:0000837!3.46e-24!165;CL:0000094!4.80e-11!8;CL:0000842!1.57e-10!3;CL:0002393!5.44e-09!9;CL:0002397!5.44e-09!9;CL:0000771!1.79e-08!2;CL:0000224!5.34e-08!4;CL:0000081!6.43e-08!11;CL:0000134!1.01e-07!358;CL:0002320!2.20e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.33e-38;33!CL:0002057;1.33e-38;33!CL:0000473;4.50e-29;39!CL:0000234;4.50e-29;39!CL:0000766;1.93e-23;69!CL:0000576;7.67e-23;48!CL:0000771;4.70e-19;2!CL:0000094;4.14e-18;8!CL:0000081;3.13e-13;11!CL:0000775;8.84e-13;3!CL:0000763;1.19e-11;100!CL:0002087;5.06e-09;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,9.42e-44,42;CL:0002057,9.42e-44,42;CL:0000766,5.56e-40,72;CL:0000473,5.56e-38,48;CL:0000234,5.56e-38,48;CL:0002194,6.78e-30,59;CL:0000576,6.78e-30,59;CL:0000040,6.78e-30,59;CL:0000559,6.78e-30,59;CL:0002009,7.51e-29,61;CL:0000839,1.64e-26,66;CL:0000557,4.37e-26,67;CL:0000763,8.63e-26,108;CL:0000049,8.63e-26,108;CL:0000738,6.81e-20,136;CL:0000771,4.49e-19,2;CL:0000094,4.05e-18,8;CL:0002032,2.42e-16,161;CL:0000837,2.42e-16,161;CL:0000037,1.55e-15,168;CL:0000988,1.37e-14,177;CL:0002087,3.05e-14,115;CL:0002031,1.51e-13,120;CL:0000081,3.08e-13,11;CL:0000775,8.84e-13,3 | |||
|ontology_enrichment_development_v019=CL:0002057;1.48e-31;42!CL:0000049;4.08e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.92e-53!102;UBERON:0003061!5.92e-53!102;UBERON:0002193!2.64e-47!112;UBERON:0002371!1.66e-39!80;UBERON:0001474!3.66e-36!86;UBERON:0004765!1.56e-29!101;UBERON:0001434!1.56e-29!101;UBERON:0002405!1.46e-26!115;UBERON:0003081!1.17e-20!216;UBERON:0000178!9.52e-17!15;UBERON:0000179!9.52e-17!15;UBERON:0000463!9.52e-17!15;UBERON:0002204!1.59e-14!167;UBERON:0002384!6.30e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.37e-09;15!UBERON:0000179;2.37e-09;15!UBERON:0000463;2.37e-09;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.01e-28,98;UBERON:0003061,2.01e-28,98;UBERON:0002193,1.54e-25,108;UBERON:0002371,9.59e-23,76;UBERON:0001474,6.43e-21,82;UBERON:0004765,7.40e-19,90;UBERON:0002405,3.57e-18,93;UBERON:0001434,9.74e-17,100;UBERON:0003081,3.40e-12,203;UBERON:0000178,2.22e-09,15;UBERON:0000179,2.22e-09,15;UBERON:0000463,2.22e-09,15;UBERON:0002204,4.95e-09,167 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0,1.20326668482085,1.30206522429511,0,0,0,0,0,0,0.464858073811369,0,0.619412741790207,8.63077176966451,2.30544635876191,5.91205574721463,11.721353145045,5.16387746867061,9.47985406160392,0.188242339542605,0,0,10.1007684482398,2.24650318953266,3.19668562899521,0.989553900560148,0.199463657621632,0.852449501065388,2.32167390902867,0.56738522469114,0,3.26623264833766,0.521482918420201,2.17188844705117,0.605399502633369,0.368277635987565,1.26584954976354,0,0,0.209658645508376,0.112328631146495,0,0.16072558669708,0.570025487482497,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.9068250461638,19.3890132074163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.864719720501769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.49404214368309,0,7.0450637284126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.862856803274467,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52234282769651,0,2.27858874869665,0.476463550915578,0.411362273086194,2.59389324477087,4.32025149790492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.398495976502139,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449947783103001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p10@RPS9 | |||
}} |
Latest revision as of 21:34, 19 September 2015
Short description: | p10@RPS9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_RPS9_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -93bp_to_BC020462_5end |
EntrezGene: | RPS9 |
HGNC: | 10442 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 9.42e-44 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.42e-44 | 42 |
myeloid leukocyte | 5.56e-40 | 72 |
defensive cell | 5.56e-38 | 48 |
phagocyte | 5.56e-38 | 48 |
monopoietic cell | 6.78e-30 | 59 |
monocyte | 6.78e-30 | 59 |
monoblast | 6.78e-30 | 59 |
promonocyte | 6.78e-30 | 59 |
macrophage dendritic cell progenitor | 7.51e-29 | 61 |
myeloid lineage restricted progenitor cell | 1.64e-26 | 66 |
granulocyte monocyte progenitor cell | 4.37e-26 | 67 |
myeloid cell | 8.63e-26 | 108 |
common myeloid progenitor | 8.63e-26 | 108 |
leukocyte | 6.81e-20 | 136 |
eosinophil | 4.49e-19 | 2 |
granulocyte | 4.05e-18 | 8 |
hematopoietic oligopotent progenitor cell | 2.42e-16 | 161 |
hematopoietic multipotent progenitor cell | 2.42e-16 | 161 |
hematopoietic stem cell | 1.55e-15 | 168 |
hematopoietic cell | 1.37e-14 | 177 |
nongranular leukocyte | 3.05e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 1.51e-13 | 120 |
blood cell | 3.08e-13 | 11 |
neutrophil | 8.84e-13 | 3 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.01e-28 | 98 |
blood island | 2.01e-28 | 98 |
hemolymphoid system | 1.54e-25 | 108 |
bone marrow | 9.59e-23 | 76 |
bone element | 6.43e-21 | 82 |
skeletal element | 7.40e-19 | 90 |
immune system | 3.57e-18 | 93 |
skeletal system | 9.74e-17 | 100 |
lateral plate mesoderm | 3.40e-12 | 203 |
blood | 2.22e-09 | 15 |
haemolymphatic fluid | 2.22e-09 | 15 |
organism substance | 2.22e-09 | 15 |
musculoskeletal system | 4.95e-09 | 167 |