FFCP PHASE1:Hg19::chr19:4279059..4279071,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56961 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30633 | |||
|TSSclassifier=strong | |||
|UniProt=Q96IW2 | |||
|association_with_transcript=461bp_to_ENST00000221852,ENST00000543264,NM_020209,uc002lzw.2,uc010dtu.2_5end | |||
|cluster_id=chr19:4279059..4279071,+ | |||
|coexpression_cluster_id=C2493 | |||
|description=CAGE_peak_4_at_SHD_5end | |||
|id=chr19:4279059..4279071,+ | |||
|ontology_enrichment_celltype=CL:0002322!4.36e-11!5 | |||
|ontology_enrichment_celltype_v019=CL:0000333;3.20e-13;5 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;6.99e-09;82!UBERON:0004140;6.62e-08;1!UBERON:0005425;6.62e-08;1 | |||
|ontology_enrichment_disease=DOID:169!7.86e-07!6 | |||
|ontology_enrichment_disease_v019=DOID:169;4.23e-11;6!DOID:9119;1.65e-08;1!DOID:171;7.83e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:169,4.31e-11,6;DOID:9119,1.65e-08,1;DOID:171,7.92e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.42e-39!94;UBERON:0001016!1.42e-39!94;UBERON:0001017!2.42e-34!82;UBERON:0001049!3.74e-34!57;UBERON:0005068!3.74e-34!57;UBERON:0006241!3.74e-34!57;UBERON:0007135!3.74e-34!57;UBERON:0005743!5.35e-34!86;UBERON:0000955!6.34e-34!69;UBERON:0006238!6.34e-34!69;UBERON:0002616!2.76e-30!59;UBERON:0003075!3.58e-27!86;UBERON:0007284!3.58e-27!86;UBERON:0002346!1.73e-25!90;UBERON:0002780!4.41e-25!41;UBERON:0001890!4.41e-25!41;UBERON:0006240!4.41e-25!41;UBERON:0003080!2.48e-24!42;UBERON:0002020!8.76e-24!34;UBERON:0003528!8.76e-24!34;UBERON:0001893!1.01e-23!34;UBERON:0001869!5.29e-23!32;UBERON:0002791!4.57e-22!33;UBERON:0007023!1.44e-20!115;UBERON:0002619!8.97e-20!22;UBERON:0004121!1.06e-19!169;UBERON:0001950!2.85e-19!20;UBERON:0003056!4.51e-19!61;UBERON:0000924!6.06e-19!173;UBERON:0006601!6.06e-19!173;UBERON:0000153!1.30e-18!129;UBERON:0007811!1.30e-18!129;UBERON:0000033!8.05e-18!123;UBERON:0000956!5.27e-17!25;UBERON:0000203!5.27e-17!25;UBERON:0000200!3.24e-14!6;UBERON:0004732!8.88e-13!13;UBERON:0004733!6.33e-11!12;UBERON:0002028!6.33e-11!12;UBERON:0007277!6.33e-11!12;UBERON:0003076!7.18e-11!15;UBERON:0003057!7.18e-11!15;UBERON:0002298!6.37e-10!8;UBERON:0002308!2.80e-08!9;UBERON:0000125!2.80e-08!9;UBERON:0000013!3.13e-08!5;UBERON:0002410!3.13e-08!5;UBERON:0002771!8.84e-08!3;UBERON:0000988!9.04e-08!3;UBERON:0001896!2.08e-07!3;UBERON:0005290!2.08e-07!3;UBERON:0010096!2.08e-07!3;UBERON:0001871!4.16e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.45e-29;20!UBERON:0002619;7.48e-27;22!UBERON:0000956;1.45e-23;25!UBERON:0000203;1.45e-23;25!UBERON:0003528;5.78e-18;34!UBERON:0002020;5.78e-18;34!UBERON:0000200;1.00e-17;6!UBERON:0001869;4.20e-15;32!UBERON:0002791;4.63e-15;32!UBERON:0001893;1.23e-14;34!UBERON:0002702;4.03e-14;2!UBERON:0000013;3.20e-13;5!UBERON:0002410;3.20e-13;5!UBERON:0000010;1.78e-12;8!UBERON:0001872;2.08e-12;5!UBERON:0000073;4.90e-10;53!UBERON:0002616;4.90e-10;53!UBERON:0000988;1.02e-09;3!UBERON:0001870;1.02e-09;3!UBERON:0002780;1.59e-09;41!UBERON:0001890;1.59e-09;41!UBERON:0001016;5.34e-09;83!UBERON:0002902;3.33e-08;1!UBERON:0009899;3.33e-08;1!UBERON:0002581;6.62e-08;1!UBERON:0002022;6.62e-08;1!UBERON:0002135;6.62e-08;1!UBERON:0000941;6.62e-08;1!UBERON:0001785;6.62e-08;1!UBERON:0002464;6.62e-08;1!UBERON:0004904;6.62e-08;1!UBERON:0001021;6.62e-08;1!UBERON:0000955;8.21e-08;68!UBERON:0001017;6.17e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.29e-29,20;UBERON:0002619,6.72e-27,22;UBERON:0000956,1.32e-23,25;UBERON:0000203,1.32e-23,25;UBERON:0001016,2.78e-22,89;UBERON:0003528,1.10e-20,34;UBERON:0002020,1.10e-20,34;UBERON:0002791,3.01e-18,32;UBERON:0001869,3.01e-18,32;UBERON:0000200,1.00e-17,6;UBERON:0001893,4.14e-17,34;UBERON:0001049,5.67e-17,56;UBERON:0005068,5.67e-17,56;UBERON:0006241,5.67e-17,56;UBERON:0007135,5.67e-17,56;UBERON:0000955,1.24e-15,68;UBERON:0006238,1.24e-15,68;UBERON:0000073,3.30e-15,53;UBERON:0002616,3.30e-15,53;UBERON:0001017,7.11e-15,81;UBERON:0003075,8.13e-15,82;UBERON:0007284,8.13e-15,82;UBERON:0002702,5.28e-14,2;UBERON:0002346,5.31e-14,86;UBERON:0002780,5.58e-14,41;UBERON:0001890,5.58e-14,41;UBERON:0003080,5.58e-14,41;UBERON:0006240,5.58e-14,41;UBERON:0000013,3.28e-13,5;UBERON:0002410,3.28e-13,5;UBERON:0010371,7.15e-13,104;UBERON:0004121,9.63e-13,171;UBERON:0000924,9.63e-13,171;UBERON:0006601,9.63e-13,171;UBERON:0001872,1.29e-12,5;UBERON:0000010,1.71e-12,8;UBERON:0003056,6.96e-11,61;UBERON:0001870,1.22e-09,3;UBERON:0000988,1.90e-09,3;UBERON:0010314,1.93e-09,132;UBERON:0007023,1.44e-08,114;UBERON:0002902,3.34e-08,1;UBERON:0009899,3.34e-08,1;UBERON:0002581,4.40e-08,1;UBERON:0000941,5.79e-08,1;UBERON:0001785,5.79e-08,1;UBERON:0002464,5.79e-08,1;UBERON:0004904,5.79e-08,1;UBERON:0001021,5.79e-08,1;UBERON:0003902,5.79e-08,1;UBERON:0005425,5.79e-08,1;UBERON:0002135,8.69e-08,1;UBERON:0002022,9.29e-08,1;UBERON:0011216,8.22e-07,223 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0.476981248610684,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,0.397589304964456,0.813357600086629,0.414644220061482,0.504641701751257,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604297247958111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48335359146061,0.154048617114644,0,0.137836572484531,0,0,0.0852266274161009,3.56128142586949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.653598399891,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,1.29875337426592,1.99613798001194,0,0,0,0,0,0,1.72371686620732,0,1.90987494426621,0,0.120596438625408,0,0.221158519862449,0.886642856860642,0.658156191461918,0,0,0,0,0,0.0897576444097721,0.108647371922008,0,0,0,0,0.31396051279005,0.166211681900156,0,0,0,0,0.158936578980379,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.539209063845416,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.949661939338181,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.410716136675979,0,0,0,1.11712960508902,0,0,0,0,0,1.07493555978762,0,0,0,0,0,0,0,0,0.272406812223151,0.160753148465019,0.137539436597234,0,0,0,1.09349201984444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646414781807753,1.05786081394152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77213635993397,0.610131324509816,1.001527445652,0.573409195690071,0.443716206147409,0.931446044120752,0.138348634936231,0,0,0,0,6.08835377548946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.800055529326307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24432592536558,0,0,0,0,0,0,0,0,0,0,0,0,0,3.06946491128764,15.8502472753122,0.314531883711793,6.22494937694479,0,0,0,0,0,0,0,0,0,0.513833800771676,0,1.43670473151436,0.615349092722265,0,2.83544735103293,0.322951291263702,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.945526184657525,0,1.86018116851066,1.26831620387814,0,0,0,0,0,0,0,0,0,0,0,0,1.08751572762931,1.84163765975977,0,0,0,0,0,0.913158720509496,0,0,0.142953088353313,0.158013611732727,4.41717416398876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,10.5443910835525,0.118920090777569,0,0,0,0,0,0,0,0,0,0,3.3812458206672,0,0,0,0,0,0,0,0,0,0,0,1.29183831362738,0,0,0,0,0,0,0,13.1766441051894,0.101988829741982,0,0,0,0,0,0.829169439458779,0.413731983447581,0,0.23806443146374,0,0.0620747142958579,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@SHD | |||
}} |
Latest revision as of 08:36, 18 September 2015
Short description: | p4@SHD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SHD_5end |
Coexpression cluster: | C2493_neuroblastoma_acute_teratocarcinoma_small_merkel_rhabdomyosarcoma_occipital |
Association with transcript: | 461bp_to_ENST00000221852, ENST00000543264, NM_020209, uc002lzw.2, uc010dtu.2_5end |
EntrezGene: | SHD |
HGNC: | 30633 |
UniProt: | Q96IW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 4.31e-11 | 6 |
acute myeloid leukemia | 1.65e-08 | 1 |
neuroectodermal tumor | 7.92e-07 | 10 |