FFCP PHASE1:Hg19::chr19:36119975..36120003,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79171 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28117 | |||
|TSSclassifier=strong | |||
|UniProt=Q9BTD8 | |||
|association_with_transcript=0bp_to_ENST00000262633,ENST00000360475,NM_024321,uc002oan.2,uc002oao.2,uc002oap.2,uc002oaq.2,uc010eef.2,uc010eeg.2,uc010xsx.1_5end | |||
|cluster_id=chr19:36119975..36120003,+ | |||
|description=CAGE_peak_2_at_RBM42_5end | |||
|id=chr19:36119975..36120003,+ | |||
|ontology_enrichment_celltype=CL:0000144!6.69e-40!625;CL:0000012!4.75e-39!682;CL:0000548!9.38e-38!679;CL:0000004!9.38e-38!679;CL:0000255!9.38e-38!679;CL:0002321!2.77e-29!248;CL:0002371!3.72e-29!591;CL:0000220!6.91e-29!246;CL:0000003!3.43e-25!722;CL:0000222!1.78e-22!119;CL:0000055!1.86e-16!180;CL:0000183!1.26e-13!59;CL:0000393!3.24e-12!60;CL:0000211!3.24e-12!60;CL:0000063!1.33e-11!578;CL:0000187!2.04e-11!54;CL:0000680!2.08e-11!57;CL:0000056!2.08e-11!57;CL:0000355!2.08e-11!57;CL:0000213!5.96e-11!57;CL:0000215!5.96e-11!57;CL:0000066!1.89e-10!254;CL:0000192!2.27e-10!42;CL:0000514!2.27e-10!42;CL:0000076!1.52e-08!62;CL:0002078!3.28e-08!44;CL:0000359!3.55e-08!32;CL:0000115!9.74e-08!35;CL:0000034!2.19e-07!444;CL:1000449!3.04e-07!16;CL:0000071!7.18e-07!18;CL:0002546!7.18e-07!18;CL:0002139!7.55e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000192;7.72e-08;43!CL:0000359;8.63e-08;32!CL:0002139;7.08e-07;24!CL:0000071;7.35e-07;18!CL:1000449;7.37e-07;15!CL:0000213;7.46e-07;58!CL:0000215;7.46e-07;58!CL:0000115;8.35e-07;36!CL:0000187;8.61e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,4.23e-30,250;CL:0000222,2.86e-23,121;CL:0000393,1.26e-12,61;CL:0000211,1.26e-12,61;CL:0000187,7.94e-12,55;CL:0000680,8.22e-12,58;CL:0000056,8.22e-12,58;CL:0000355,8.22e-12,58;CL:0000213,2.87e-11,58;CL:0000215,2.87e-11,58;CL:0000192,8.67e-11,43;CL:0000514,8.67e-11,43;CL:0000066,3.49e-10,253;CL:0000076,1.31e-08,63;CL:0002078,1.62e-08,45;CL:0000359,3.55e-08,32;CL:0000034,4.16e-08,441;CL:0000115,4.72e-08,36;CL:0000723,4.84e-07,433;CL:0000071,7.18e-07,18;CL:0002546,7.18e-07,18;CL:0002139,7.55e-07,24;CL:1000449,8.54e-07,15;CL:0000048,9.34e-07,427 | |||
|ontology_enrichment_development_v019=CL:0000514;7.72e-08;43!CL:0000222;1.45e-07;121!CL:0002546;7.35e-07;18!CL:0000355;8.12e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000490!7.06e-13!138;UBERON:0002049!2.17e-12!79;UBERON:0007798!2.17e-12!79;UBERON:0003914!3.20e-12!118;UBERON:0004872!1.28e-11!84;UBERON:0000055!1.80e-11!69;UBERON:0000486!4.79e-11!82;UBERON:0001981!4.85e-11!60;UBERON:0007500!4.85e-11!60;UBERON:0004537!4.85e-11!60;UBERON:0006965!4.85e-11!60;UBERON:0005256!1.72e-10!143;UBERON:0004290!2.71e-10!70;UBERON:0001637!4.82e-10!42;UBERON:0003509!4.82e-10!42;UBERON:0004572!4.82e-10!42;UBERON:0000914!7.70e-10!83;UBERON:0002329!7.70e-10!83;UBERON:0003077!7.70e-10!83;UBERON:0003059!7.70e-10!83;UBERON:0007282!7.70e-10!83;UBERON:0009618!7.70e-10!83;UBERON:0007285!7.70e-10!83;UBERON:0001134!1.50e-09!61;UBERON:0002036!1.50e-09!61;UBERON:0003082!1.50e-09!61;UBERON:0002100!1.56e-08!216;UBERON:0002385!2.43e-08!63;UBERON:0001015!2.43e-08!63;UBERON:0000383!2.43e-08!63;UBERON:0004535!2.83e-07!110;UBERON:0004211!3.04e-07!16;UBERON:0001285!3.04e-07!16;UBERON:0007684!3.04e-07!16;UBERON:0003220!3.04e-07!16;UBERON:0004208!3.04e-07!16;UBERON:0004573!6.00e-07!33;UBERON:0004571!6.00e-07!33;UBERON:0001986!7.18e-07!18;UBERON:0004638!7.18e-07!18;UBERON:0004852!7.18e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0003914;4.69e-08;74!UBERON:0007500;7.21e-08;56!UBERON:0001981;7.21e-08;56!UBERON:0004537;7.21e-08;56!UBERON:0001637;1.23e-07;42!UBERON:0003509;1.23e-07;42!UBERON:0004572;1.23e-07;42!UBERON:0000490;2.56e-07;33!UBERON:0004638;7.35e-07;18!UBERON:0001986;7.35e-07;18!UBERON:0004852;7.35e-07;18!UBERON:0006555;7.37e-07;15!UBERON:0004819;7.37e-07;15!UBERON:0001285;7.37e-07;15!UBERON:0007684;7.37e-07;15!UBERON:0000055;8.09e-07;65 | |||
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| |||
|short_description=p2@RBM42 | |||
}} |
Latest revision as of 12:45, 17 September 2015
Short description: | p2@RBM42 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RBM42_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000262633, ENST00000360475, NM_024321, uc002oan.2, uc002oao.2, uc002oap.2, uc002oaq.2, uc010eef.2, uc010eeg.2, uc010xsx.1_5end |
EntrezGene: | RBM42 |
HGNC: | 28117 |
UniProt: | Q9BTD8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 4.23e-30 | 250 |
mesodermal cell | 2.86e-23 | 121 |
electrically responsive cell | 1.26e-12 | 61 |
electrically active cell | 1.26e-12 | 61 |
muscle cell | 7.94e-12 | 55 |
muscle precursor cell | 8.22e-12 | 58 |
myoblast | 8.22e-12 | 58 |
multi-potent skeletal muscle stem cell | 8.22e-12 | 58 |
lining cell | 2.87e-11 | 58 |
barrier cell | 2.87e-11 | 58 |
smooth muscle cell | 8.67e-11 | 43 |
smooth muscle myoblast | 8.67e-11 | 43 |
epithelial cell | 3.49e-10 | 253 |
squamous epithelial cell | 1.31e-08 | 63 |
meso-epithelial cell | 1.62e-08 | 45 |
vascular associated smooth muscle cell | 3.55e-08 | 32 |
stem cell | 4.16e-08 | 441 |
endothelial cell | 4.72e-08 | 36 |
somatic stem cell | 4.84e-07 | 433 |
blood vessel endothelial cell | 7.18e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.18e-07 | 18 |
endothelial cell of vascular tree | 7.55e-07 | 24 |
epithelial cell of nephron | 8.54e-07 | 15 |
multi fate stem cell | 9.34e-07 | 427 |