FFCP PHASE1:Hg19::chr19:18893583..18893586,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr19:18893583..18893586,+ | |||
|coexpression_cluster_id=C240 | |||
|description=CAGE_peak_at_chr19:18893583..18893586,+ | |||
|id=chr19:18893583..18893586,+ | |||
|ontology_enrichment_celltype=CL:0002334!3.06e-25!12;CL:0000136!2.20e-20!15;CL:0002580!2.95e-20!3;CL:0002615!3.58e-20!3;CL:0000135!1.13e-19!3;CL:0000386!1.13e-19!3;CL:0000388!1.13e-19!3;CL:0000153!1.64e-17!9;CL:0000447!1.64e-17!9;CL:0002617!4.26e-14!2;CL:0000499!6.94e-14!27;CL:0000057!1.45e-11!75;CL:0000327!3.45e-11!14;CL:0000667!3.48e-10!6;CL:0000058!3.48e-10!6;CL:0000138!3.48e-10!6;CL:0000134!1.59e-09!358;CL:0000325!2.25e-09!39;CL:0000214!2.43e-09!3;CL:0002579!2.53e-09!3;CL:0002320!3.08e-09!365;CL:0000219!3.19e-08!390;CL:0002616!4.57e-08!1;CL:0002581!4.89e-08!1;CL:0000055!1.65e-07!180;CL:0000048!5.27e-07!430;CL:0000630!6.99e-07!9;CL:0000723!7.85e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0002580;8.71e-36;3!CL:0002617;1.64e-24;2!CL:0002334;2.20e-24;12!CL:0000136;7.77e-23;13!CL:0000153;9.52e-21;9!CL:0000447;9.52e-21;9!CL:0000138;7.09e-18;6!CL:0002615;6.22e-17;3!CL:0000135;2.29e-16;3!CL:0000388;2.29e-16;3!CL:0000499;1.71e-14;28!CL:0002616;1.82e-13;1!CL:0002581;2.05e-13;1!CL:0000327;1.42e-12;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002580,7.74e-36,3;CL:0002617,1.64e-24,2;CL:0002334,2.25e-24,12;CL:0000153,9.52e-21,9;CL:0000447,9.52e-21,9;CL:0000136,8.53e-20,15;CL:0000058,6.69e-18,6;CL:0000138,6.69e-18,6;CL:0002615,6.22e-17,3;CL:0000135,2.20e-16,3;CL:0000388,2.20e-16,3;CL:0000499,1.69e-14,28;CL:0002616,1.82e-13,1;CL:0002581,2.06e-13,1;CL:0000327,1.42e-12,15;CL:0000134,1.68e-07,354;CL:0002320,2.59e-07,361;CL:0000057,6.42e-07,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003688!1.40e-26!6;UBERON:0002358!1.40e-26!6;UBERON:0003684!1.40e-26!6;UBERON:0001178!1.40e-26!6;UBERON:0004457!3.54e-25!12;UBERON:0000042!3.54e-25!12;UBERON:0000043!1.13e-19!3;UBERON:0000310!3.33e-16!10;UBERON:0001443!1.03e-14!11;UBERON:0005406!2.08e-14!2;UBERON:0006915!2.43e-09!3;UBERON:0002018!2.43e-09!3;UBERON:0002217!2.43e-09!3;UBERON:0007616!2.43e-09!3;UBERON:0002384!7.61e-09!375;UBERON:0004923!1.64e-07!57;UBERON:0000989!1.91e-07!1;UBERON:0008811!1.91e-07!1;UBERON:0006258!1.91e-07!1;UBERON:0005876!1.91e-07!1;UBERON:0004874!1.91e-07!1;UBERON:0001301!2.63e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0000310;2.62e-29;10!UBERON:0001443;1.19e-26;11!UBERON:0005406;4.38e-25;2!UBERON:0004457;4.27e-21;9!UBERON:0000042;4.27e-21;9!UBERON:0003688;2.86e-18;6!UBERON:0002358;2.86e-18;6!UBERON:0003684;2.86e-18;6!UBERON:0001178;2.86e-18;6!UBERON:0007846;2.29e-16;3!UBERON:0000043;2.29e-16;3!UBERON:0007845;2.29e-16;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000310,2.47e-29,10;UBERON:0001443,1.13e-26,11;UBERON:0005406,4.38e-25,2;UBERON:0003688,3.13e-18,6;UBERON:0002358,3.13e-18,6;UBERON:0003684,3.13e-18,6;UBERON:0001178,3.13e-18,6;UBERON:0007846,2.20e-16,3;UBERON:0000043,2.20e-16,3;UBERON:0007845,2.20e-16,3;UBERON:0004457,7.32e-16,12;UBERON:0000042,7.32e-16,12;UBERON:0002384,4.69e-07,371 | |||
|phase1_expression=10.1739892391512,2.14100523890983,0.986680828671798,27.0197905553452,5.36353313312745,23.55314015071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,0,1.30361867064741,0,4.86634870302636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0.337552664482532,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,9.09630016223939,0,0,0,0,0,0,0,0,0,0,0,0,2.23297027036899,8.13348458426731,6.45518217196069,1.02511319404561,0,0.804269605718038,20.7785293022987,0,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.11107635297664,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638002319463839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686791410365586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.743990036333503,3.23522940041993,1.29787968637137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr19:18893583..18893586,+ | |||
}} |
Latest revision as of 05:19, 26 July 2015
Short description: | p@chr19:18893583..18893586, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:18893583..18893586, + |
Coexpression cluster: | C240_Adipocyte_Preadipocyte_Osteoblast_Chondrocyte_tenocyte_Synoviocyte_mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte of the breast | 7.74e-36 | 3 |
adipocyte of breast | 1.64e-24 | 2 |
preadipocyte | 2.25e-24 | 12 |
GAG secreting cell | 9.52e-21 | 9 |
carbohydrate secreting cell | 9.52e-21 | 9 |
fat cell | 8.53e-20 | 15 |
chondroblast | 6.69e-18 | 6 |
chondrocyte | 6.69e-18 | 6 |
adipocyte of omentum tissue | 6.22e-17 | 3 |
fibrocyte | 2.20e-16 | 3 |
tendon cell | 2.20e-16 | 3 |
stromal cell | 1.69e-14 | 28 |
perirenal adipocyte cell | 1.82e-13 | 1 |
perirenal preadipocyte | 2.06e-13 | 1 |
extracellular matrix secreting cell | 1.42e-12 | 15 |
mesenchymal cell | 1.68e-07 | 354 |
connective tissue cell | 2.59e-07 | 361 |
fibroblast | 6.42e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
breast | 2.47e-29 | 10 |
chest | 1.13e-26 | 11 |
perirenal fat | 4.38e-25 | 2 |
omentum | 3.13e-18 | 6 |
peritoneum | 3.13e-18 | 6 |
abdominal cavity | 3.13e-18 | 6 |
visceral peritoneum | 3.13e-18 | 6 |
dense regular connective tissue | 2.20e-16 | 3 |
tendon | 2.20e-16 | 3 |
regular connective tissue | 2.20e-16 | 3 |
cavity lining | 7.32e-16 | 12 |
serous membrane | 7.32e-16 | 12 |
connective tissue | 4.69e-07 | 371 |