FFCP PHASE1:Hg19::chr19:18709357..18709369,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr19:18709357..18709369,- | |||
|coexpression_cluster_id=C1449 | |||
|description=CAGE_peak_at_chr19:18709357..18709369,- | |||
|id=chr19:18709357..18709369,- | |||
|ontology_enrichment_celltype=CL:0000136!1.08e-19!15;CL:0000153!3.43e-16!9;CL:0000447!3.43e-16!9;CL:0002334!5.41e-12!12;CL:0000499!2.33e-11!27;CL:0002615!1.29e-10!3;CL:0002521!2.25e-10!3;CL:0002580!4.00e-10!3;CL:0002579!4.80e-10!3;CL:0000327!5.47e-10!14;CL:0000214!6.47e-10!3;CL:0000135!7.07e-10!3;CL:0000386!7.07e-10!3;CL:0000388!7.07e-10!3;CL:0000325!7.74e-09!39;CL:0000667!1.27e-08!6;CL:0000058!1.27e-08!6;CL:0000138!1.27e-08!6;CL:0002617!1.25e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000136;2.45e-57;13!CL:0002615;3.16e-36;3!CL:0000153;6.48e-32;9!CL:0000447;6.48e-32;9!CL:0002617;6.68e-25;2!CL:0000327;3.51e-19;15!CL:0000138;1.13e-17;6!CL:0002521;7.90e-17;3!CL:0000214;1.04e-16;3!CL:0002580;1.96e-16;3!CL:0002334;8.37e-16;12!CL:0002581;2.78e-13;1!CL:0002616;4.77e-13;1!CL:0000499;2.89e-10;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.08e-49,15;CL:0002615,2.65e-36,3;CL:0000153,7.14e-32,9;CL:0000447,7.14e-32,9;CL:0002617,8.00e-25,2;CL:0000327,3.71e-19,15;CL:0000058,1.13e-17,6;CL:0000138,1.13e-17,6;CL:0002521,6.74e-17,3;CL:0000214,1.17e-16,3;CL:0002580,2.38e-16,3;CL:0002334,8.87e-16,12;CL:0002581,2.62e-13,1;CL:0002616,4.23e-13,1;CL:0000499,2.98e-10,28;CL:0000151,5.92e-08,36;CL:0000134,1.68e-07,354;CL:0002320,2.59e-07,361 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004457!7.38e-20!12;UBERON:0000042!7.38e-20!12;UBERON:0003688!6.16e-19!6;UBERON:0002358!6.16e-19!6;UBERON:0003684!6.16e-19!6;UBERON:0001178!6.16e-19!6;UBERON:0002190!2.25e-10!3;UBERON:0006915!6.47e-10!3;UBERON:0002018!6.47e-10!3;UBERON:0002217!6.47e-10!3;UBERON:0007616!6.47e-10!3;UBERON:0000043!7.07e-10!3;UBERON:0000310!8.48e-08!10;UBERON:0001013!1.30e-07!14;UBERON:0005406!1.41e-07!2;UBERON:0001443!4.79e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;1.23e-46;9!UBERON:0000042;1.23e-46;9!UBERON:0003688;1.14e-31;6!UBERON:0002358;1.14e-31;6!UBERON:0003684;1.14e-31;6!UBERON:0001178;1.14e-31;6!UBERON:0005406;1.54e-24;2!UBERON:0000310;4.11e-19;10!UBERON:0001443;2.10e-17;11!UBERON:0002190;7.90e-17;3!UBERON:0006915;1.04e-16;3!UBERON:0007616;1.04e-16;3!UBERON:0002217;1.04e-16;3!UBERON:0002018;1.04e-16;3!UBERON:0001013;8.39e-14;14!UBERON:0002072;1.77e-10;5!UBERON:0004905;8.00e-07;8!UBERON:0000982;8.00e-07;8!UBERON:0004770;8.00e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004457,5.88e-35,12;UBERON:0000042,5.88e-35,12;UBERON:0003688,9.74e-32,6;UBERON:0002358,9.74e-32,6;UBERON:0003684,9.74e-32,6;UBERON:0001178,9.74e-32,6;UBERON:0005406,1.29e-24,2;UBERON:0000310,4.96e-19,10;UBERON:0001443,2.49e-17,11;UBERON:0002190,6.74e-17,3;UBERON:0006915,1.17e-16,3;UBERON:0007616,1.17e-16,3;UBERON:0002217,1.17e-16,3;UBERON:0002018,1.17e-16,3;UBERON:0001013,7.47e-14,14;UBERON:0002072,1.61e-10,5;UBERON:0004458,2.52e-08,49;UBERON:0002384,4.69e-07,371;UBERON:0004905,8.35e-07,8;UBERON:0000982,8.35e-07,8;UBERON:0004770,8.35e-07,8 | |||
|phase1_expression=6.90377841228115,4.06790995392868,3.38290569830331,12.0087958023756,4.91657203870017,3.48935409640147,10.1319951267324,3.79031924056099,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,0,1.44846518960824,0.795285947051099,1.94653948121054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2254015016441,0.460385919864187,2.52594084989766,2.56278298511402,0.511707249066704,0.64341568457443,4.45254199334973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0.165284915360978,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.43326034125095,3.29294892959902,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0.31900115973192,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0,0.138674673013139,0,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315132729228895,0.329663433524666,0.337017719270924,0,0,0,0,0,0.275078873194468,0,0,0,0,0,0,0,0,0.35857467866569,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0.205325613712494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0.371995018166751,0.462175628631418,0.865253124247578,0,0,0,0.101988829741982,0,0,0,0.151557396436479,0,0,0.103432995861895,0.213233981900981,0,0,0,0,0.12729431655633,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr19:18709357..18709369,- | |||
}} |
Latest revision as of 05:16, 26 July 2015
Short description: | p@chr19:18709357..18709369, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:18709357..18709369, - |
Coexpression cluster: | C1449_Mesenchymal_Adipocyte_Synoviocyte_Chondrocyte_Preadipocyte_tenocyte_spindle |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.08e-49 | 15 |
adipocyte of omentum tissue | 2.65e-36 | 3 |
GAG secreting cell | 7.14e-32 | 9 |
carbohydrate secreting cell | 7.14e-32 | 9 |
adipocyte of breast | 8.00e-25 | 2 |
extracellular matrix secreting cell | 3.71e-19 | 15 |
chondroblast | 1.13e-17 | 6 |
chondrocyte | 1.13e-17 | 6 |
subcutaneous fat cell | 6.74e-17 | 3 |
synovial cell | 1.17e-16 | 3 |
preadipocyte of the breast | 2.38e-16 | 3 |
preadipocyte | 8.87e-16 | 12 |
perirenal preadipocyte | 2.62e-13 | 1 |
perirenal adipocyte cell | 4.23e-13 | 1 |
stromal cell | 2.98e-10 | 28 |
secretory cell | 5.92e-08 | 36 |
mesenchymal cell | 1.68e-07 | 354 |
connective tissue cell | 2.59e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
cavity lining | 5.88e-35 | 12 |
serous membrane | 5.88e-35 | 12 |
omentum | 9.74e-32 | 6 |
peritoneum | 9.74e-32 | 6 |
abdominal cavity | 9.74e-32 | 6 |
visceral peritoneum | 9.74e-32 | 6 |
perirenal fat | 1.29e-24 | 2 |
breast | 4.96e-19 | 10 |
chest | 2.49e-17 | 11 |
subcutaneous adipose tissue | 6.74e-17 | 3 |
stratified squamous epithelium | 1.17e-16 | 3 |
layer of synovial tissue | 1.17e-16 | 3 |
synovial joint | 1.17e-16 | 3 |
synovial membrane of synovial joint | 1.17e-16 | 3 |
adipose tissue | 7.47e-14 | 14 |
hypodermis | 1.61e-10 | 5 |
body cavity or lining | 2.52e-08 | 49 |
connective tissue | 4.69e-07 | 371 |
articulation | 8.35e-07 | 8 |
skeletal joint | 8.35e-07 | 8 |
articular system | 8.35e-07 | 8 |