FFCP PHASE1:Hg19::chr18:67956111..67956128,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9306 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16833 | |||
|TSSclassifier=strong | |||
|UniProt=O14544 | |||
|association_with_transcript=-8bp_to_NM_004232,uc002lkr.1_5end | |||
|cluster_id=chr18:67956111..67956128,+ | |||
|description=CAGE_peak_2_at_SOCS6_5end | |||
|id=chr18:67956111..67956128,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!2.68e-14!511;UBERON:0000481!6.56e-14!347;UBERON:0000468!1.40e-12!659;UBERON:0000922!2.88e-12!612;UBERON:0002050!1.06e-11!605;UBERON:0005423!1.06e-11!605;UBERON:0000073!1.64e-11!94;UBERON:0001016!1.64e-11!94;UBERON:0000923!2.20e-11!604;UBERON:0005291!2.20e-11!604;UBERON:0006598!2.20e-11!604;UBERON:0002532!2.20e-11!604;UBERON:0000467!6.19e-11!625;UBERON:0001049!7.65e-11!57;UBERON:0005068!7.65e-11!57;UBERON:0006241!7.65e-11!57;UBERON:0007135!7.65e-11!57;UBERON:0000480!8.98e-11!626;UBERON:0003075!1.11e-10!86;UBERON:0007284!1.11e-10!86;UBERON:0005743!1.41e-10!86;UBERON:0000955!1.65e-10!69;UBERON:0006238!1.65e-10!69;UBERON:0002346!2.22e-10!90;UBERON:0001017!3.78e-10!82;UBERON:0000475!1.56e-09!365;UBERON:0007023!2.26e-09!115;UBERON:0004121!2.68e-09!169;UBERON:0000924!3.35e-09!173;UBERON:0006601!3.35e-09!173;UBERON:0002616!3.89e-09!59;UBERON:0000033!2.86e-07!123;UBERON:0000483!4.35e-07!309;UBERON:0000119!7.85e-07!312;UBERON:0003056!9.22e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;2.73e-07;53!UBERON:0002616;2.73e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,1.03e-13,223;UBERON:0003075,1.17e-11,82;UBERON:0007284,1.17e-11,82;UBERON:0001049,2.74e-11,56;UBERON:0005068,2.74e-11,56;UBERON:0006241,2.74e-11,56;UBERON:0007135,2.74e-11,56;UBERON:0010314,5.88e-11,132;UBERON:0002346,8.16e-11,86;UBERON:0001016,1.54e-10,89;UBERON:0007023,3.15e-10,114;UBERON:0000955,7.54e-10,68;UBERON:0006238,7.54e-10,68;UBERON:0000073,8.71e-10,53;UBERON:0002616,8.71e-10,53;UBERON:0001017,2.01e-09,81;UBERON:0010371,3.80e-09,104;UBERON:0004121,2.01e-08,171;UBERON:0000924,2.01e-08,171;UBERON:0006601,2.01e-08,171;UBERON:0003056,2.70e-07,61;UBERON:0000922,3.11e-07,592 | |||
|phase1_expression=1.09007027562334,0.428201047781966,0.422863212287913,0,0,0.872338524100369,0,0,0.522371256399677,0.737201809504527,2.09340350391728,1.96597234917155,0.527533956456907,1.73272894144065,2.98257638155124,1.34465029290355,1.20538905604795,2.19093027116212,0.487932798790507,1.35433163884467,0.816002764977012,0.626909442956176,2.57612388417951,2.18999080116615,0.753255837568817,0,0.0821005894499457,0.157421562627358,0,0.383829398097213,1.08371286321253,0,0.6024118375565,0.369754010166788,0,0,0.293600439334847,1.66198622559563,1.60435557976113,0.434021741431704,1.34349284543955,0.971680998056939,1.54545340580512,0.726991193897824,1.51150377475524,0.727752183563449,0.464858073811369,0.822335776043652,0.309706370895104,0.28769239232215,1.0246428261164,0.945928919554341,1.03423704220986,2.5819387343353,0,0.752969358170419,0.818718450173537,0.224723484445085,0.612167784741805,0.962787081228281,0.639337125799041,1.64925650093358,1.59570926097305,1.70489900213078,0.290209238628584,0,0,2.26123798731069,0.521482918420201,2.17188844705117,0.605399502633369,0.368277635987565,0.316462387440884,0,0.425208599930087,0.419317291016752,0.22465726229299,0.600707571366025,0.48217676009124,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764546456250458,2.64342657158052,0.560508562981536,1.05353633910031,0,0,0.205601498999509,0,0,0.473447805734733,0,0,0,0,0,0.128091319725675,0.260118695119756,0.164437904603676,0,0.289803085735052,0.296573126324121,0,0,0.453237370790265,0,0,0,0,0.651083453856419,0,0,0.255973222308837,0,0,0,0.201606743224732,0,0.289648807765598,0,0,1.02290049474824,0.361439152384566,0.50133791063589,1.01392563272577,0,4.86634870302636,2.07976597760949,1.55210578223795,2.0202000709419,1.5062593682237,0,1.48313777113772,0.97364218096405,1.21890816109487,0.531831842075461,0,0.571994910780128,0,0.596287222100115,0.860234595106124,0.347140501607594,0,0,0.825354125820202,0.626984899610432,0.775250277507987,1.42306505074684,0.66944122552934,0.805658634218294,0,1.22031028774085,1.10298924103761,0.81014194788176,0.892997282840798,0.898117490504679,1.12611480483322,1.53316637465883,0,0.732806975721629,0,0,1.3082821564276,1.98788780678127,0.506522046658319,1.32409180813219,1.43418310374407,2.4826786753885,0.560677600142307,1.06748995729705,0.74000264525148,2.8008993185979,0.538842688278752,0.817309515567294,0.908144565869588,0.576175924479999,0.937285727335186,0.312160076830321,0.570471821544449,1.34503812496621,1.87895197830024,2.10434827678571,1.96631129383148,2.04154171254893,1.71968044236475,2.06651562351531,0,0.494533858557114,0,0,1.17835279767846,1.25118519871964,1.93944880838928,0.438977620880838,1.5324389789951,1.05166641234618,0.680593098960126,0.89694817844431,1.2813443329114,0.635795703478686,0,2.26715564324566,1.03056216018252,0.744467425326359,2.02531598689519,1.26668106709558,0.504867548488229,1.47279837827679,0.646584227275248,1.77504796258307,1.5112814734146,0.67824236924195,0,0.818238361772504,0.860413786167011,1.09776335516636,0.265059536642971,1.2781333715647,1.86589899027667,0.756962552626885,0.72995471815166,0,2.57296375277154,1.38134921352481,0.464367928031979,0.721879481669586,1.30137480043828,1.18009283054671,1.20505514941741,1.8749975364507,2.17879444092406,3.08451804844426,0.943819157121151,0.392442930250692,1.92373578473195,0,1.40241773803446,0,0,3.80265104465493,3.9313088667105,4.72631925345123,0,1.72183813960359,1.20097467208968,1.64625428112938,1.1240175325762,1.50793458617446,1.29623823221941,1.95484983186195,0,1.44331342025273,1.97081688457631,1.87853910777315,0.721832238805369,0,0.761016608938393,0,0.858486162094873,0.492434012174795,0.234004265139238,1.18904929830983,0,1.34385702559088,1.41775097242386,1.25381931783988,0.871901815541886,0,4.43396914106349,0.968532774145487,3.52457796419313,4.90007841617669,4.54472760334968,6.66727890067775,1.90994212779139,5.86087236050235,0,3.70178973731965,3.90445975197093,5.43070221998099,1.12131084345361,0,0.8800594298514,1.80980402060889,0,0.845302752556,1.32969058292435,2.08014873822732,0.257207374262142,1.41849132023278,0.799266537048298,1.42977993658148,1.08524321078289,0.823240336780769,1.62868092146868,1.42156779497018,0.791951872933429,1.80863626235752,2.61460037580088,1.19967589418468,0,1.00451418286425,8.43335757932127,1.19812427745791,1.14861935834114,2.85273810081437,0.868687840005475,1.64381058040307,0.716243852959582,0,0.197030760201927,0.215627574859517,0.256686072559497,1.52456774533478,3.90419561572865,1.54657762555539,0.167516265334349,0,0,0,0,2.4538298343828,1.50051156317903,2.71265023699736,1.45579603071565,1.60586089917446,0.788512075169673,1.63997980989798,0.300946099727719,0,1.03473071292505,0.664225598535437,2.21243002250044,0.955719759148911,0.783204629850962,1.02943027143257,0.206768026122887,0.862856803274467,0.213455115606889,0.909382714338778,1.66435439510497,1.5119514666484,1.98486246255021,0.767309866440312,1.12264037773229,0.896974044789907,1.53512174720011,1.28683136914886,0,1.3878872442239,1.59805552781814,1.64254312027618,0.519254429183621,1.51073491997947,1.69203229428271,0,3.31491560169227,1.37777337797528,1.27463817604702,0.786746489756545,0.902399225814824,1.00119938235739,2.35304930753057,0,0.844413031143006,1.13733384070897,0.850468526382578,1.0795795805107,0,0.541892875087706,0,0.509752546090077,0.831076008928724,0,0.219259876645935,0.261435451024901,2.56450125116389,1.31205858279882,1.30151357865721,2.88514832613622,1.09883357782012,1.07262349896764,0.574265537996172,0,1.6068392984416,2.80345083047154,3.69716681075147,1.5350367472613,2.34322173223702,1.50388342815583,1.59518363305651,1.53407929348982,1.4245125703478,1.15699440752685,1.72971060628596,0.765676274967505,3.0347334256665,0.464845549297286,1.88887408098384,0.6970372701606,1.23213432070436,0,0.869932992075073,0.37064843820784,0.858749320451947,0.744316738719335,2.21465597303108,1.90630193923825,0.767693373934002,1.71175595213568,0.318203247925937,0,1.61885211824983,1.64722217841633,1.17812402345686,0.202182481573316,0,1.26377536871694,0.975267478179181,1.46228093778771,1.05650146756755,0.9554993798559,0.848432591722276,0,1.10273068709225,0.66343897524122,0.438450885253763,0,1.31178950409327,0,0.6196469961995,0.563391205064483,1.14729081763241,1.76848273823618,0,1.06428319221179,0.633322905892992,0.987884678879706,1.13841952129715,1.39973888097993,1.05844323998063,2.01090682660736,0,2.7301702225266,0.86101074534246,0,0.886860307073351,1.1486170010348,0,0,0,0,0,0,0,0,4.16613877397145,0.962479855263359,1.22520107990516,0,0.28853842595289,0.782560276832555,0.478278818186467,0.399158742865633,0.957526850661834,0.211673582723883,0.649243880549111,0.280797178113459,0,0,2.50634477090067,1.52362600021443,0.1605880751037,0.201799707191048,0,0,0.614481528616916,1.11838053946208,1.50164227540718,0.390776190804081,0.556812347790485,1.23087398947712,0.270455678475983,1.99843180798692,0,9.54416756081921,0.586032717087576,0.242721043499027,0,0.852408440419239,2.86493381685228,1.18785872333055,3.99308912729002,0,4.78276015795743,7.12375712146598,0,2.32237948940793,0.796991953004279,0.828851746593443,1.76352923497993,1.84083628503879,0.369254416383208,1.55519793830904,0.539210106883961,3.22238114416096,1.02314474045374,1.57829449019094,0,4.44547960578548,0.969332746095218,1.11321717794222,3.99227596002388,0.7812832832557,1.31189999994294,2.17499872630438,0.341380344856499,0.254253650292766,0.945550727071745,1.03423011972439,0.291604613383254,2.2571249341328,1.77148277162768,2.29133233388275,3.05163472634166,2.54332297841817,3.84211904639612,1.09692698576986,0.653630781113941,1.81250867562184,1.76985594558733,4.89950840142105,3.22789466143284,1.34636466614658,5.75831071186643,2.23300811812344,0.549585560411174,1.5991043280559,0,0.784901281975124,1.16348177330109,0.676786981851542,0,0,0.75901493089674,0.953619473882272,1.47698645169619,0.326465616318295,1.97894300007517,0.865554558968364,1.99052386215701,1.94606641907346,2.4441205797345,0.296521128680622,1.48276726735803,0.626531697032732,5.79649743633823,2.40773294189637,3.51396668588009,0.182454789215666,0.19566461893209,7.28341138602278,2.76209081994573,0,0,0.63186579628488,0.300646838828985,0.414752765588989,4.6525771089503,1.65495977937749,5.33685961292283,3.58417289318877,0.569219092059585,4.2989148634073,1.04135843001079,0.979923974143776,0.34823682632161,1.22308667769421,4.29965081179041,0.677294319023596,1.16942907337897,1.14961639874493,0.775912131907355,2.02989091390451,2.25980740780532,1.23337732182076,0.596143835108969,2.089256266544,0.782205530939212,1.20238230377301,1.06726497369676,3.39676336289621,5.61952626901013,1.37443915399099,5.49103993158287,1.87271237384595,1.11827282008889,2.35694034616795,2.71808412147228,2.40586546518366,1.93796613509011,2.60055530911367,0.600420288709789,4.51787750343577,2.55493176133945,2.57859264851974,0,2.51354161145029,1.60412296808179,1.43574604915363,2.39614800598789,2.14613024068285,3.12440040418622,5.71059516137173,2.52209918479682,1.16495949527454,4.09672547997563,4.12079291905832,4.04421263125109,3.24810688998671,0,2.38568906942791,3.13267834056624,0.964518890790115,0.962776056180637,0,0.899895566206002,0,2.06548492637284,0.335434687599266,1.41850273138557,1.94081976099493,2.11200673038813,1.43429871466276,1.53532157855556,5.00286728461357,1.32418394073086,1.77987976358325,1.62899880526114,0,0.653174720218818,0,0.656740165994712,1.19271615249795,1.47305718976163,3.81035807563014,1.32506888912221,3.23207390903876,4.49590845925146,2.9084762440336,2.81926008926669,1.60181118851542,2.20086027139532,1.24271716604159,0,0.395223263795889,0,0,0.544017803369474,1.0027595760908,0.612691153526923,1.31149052283922,0.942324577501406,1.77213635993397,1.58634144372552,2.1282458220105,4.58727356552057,4.32623300993724,3.60159137060024,0.830091809617385,0.624902039810533,2.42638588066636,1.42732666772484,0.941063278792687,0.468334905806882,1.44921028610825,0.895528817321244,0.934853239388898,1.66441758450784,0.947015026375446,1.0062716070103,0,3.20376095755693,2.11723293268535,1.70980920641059,0.887130899937803,0.955780602982214,0.449803112163605,1.39736661188633,0,0.797525143673985,1.5652351854352,2.25386413495828,0,1.62748293281865,1.45478927362048,1.07410557042488,2.78420255927096,1.99047944349308,0.800055529326307,0.686791410365586,1.6837474438296,2.52369796457302,4.23763626896067,4.71771501024837,1.56596575179127,0.906823702049089,0.231522474323834,1.95789363605174,0.71635536432595,3.70561736593167,2.63140859494449,0.530067437837643,1.15748422962549,1.52048196587765,0.76872455576384,0,0,1.52084279766904,0,1.32864840313363,0.490696182767533,0.655219697692825,1.47463745252232,0.211312123358627,0.59996218756479,0.213383459388282,1.20550485762571,2.83757976783418,2.02516545277025,1.95831310807222,2.48830904013189,2.68578179737669,1.1860729253635,0.629063767423586,3.71312769852847,0.33946505990805,0.850299680406731,0.991486114072017,1.67593475391973,1.90802610392051,1.1829261750188,0.80057074828547,2.1160556621441,0.6124909547064,2.6976274540513,0,3.03304332208587,0.82046545696302,1.26035848110859,2.55881834117606,2.42213468447777,0,0.196295437002051,0.11796972334774,0.366857197043358,0.808679663052368,1.90691047733584,1.3807198521202,0.198916222116275,1.72983755203292,0.20170506870352,2.34454203369928,1.30953347240711,0.163771917510097,2.95712172434091,2.29627787702542,0.781078098613847,2.06686796501184,1.8390584956233,1.09394961803644,1.09651553371436,2.97726707033577,2.81393990975393,1.14986184875636,1.07140367175657,2.35398605553177,1.82089681270989,0.91064876540519,1.95145214357805,0.345701962667338,1.02892805662451,3.26254718288792,2.10472875401117,1.30013224972365,3.00324785108587,1.56986185701028,2.04250266890802,2.5224494698241,8.21842848458546,0.647782773655864,2.38875843943525,1.35805433935647,2.3702041759909,8.83434832797752,2.43401581223611,1.60342272946051,1.24329698497822,0.17071847709395,0.691259661814092,1.29068207646083,3.66829202264753,2.47118873801557,1.27016115057279,0.9164274741762,0.93061915699296,0.955538938977433,0.782988022584546,1.07965256976767,0.487671699929078,4.53200186031526,4.10651227424988,2.3196288626764,2.4285549652957,0,1.59160620129095,1.07028081699812,0.5647304101948,1.31928620094515,0,2.08370226891451,4.15263164957519,0,2.45148321753905,0.471353094203252,4.3187862765288,4.75274240523338,3.3812458206672,1.18948980281472,0.751871343838829,0.837952543656503,0.399764623699716,1.07132363163395,1.76447435857846,2.64796510074255,2.19100916473955,0.917458566809082,4.58686666084644,0.946629373159108,2.03974470572744,0.872701380680755,2.645134202577,1.48798007266701,0.462175628631418,0.865253124247578,0.883164973845552,0.437062287854782,2.15387451719443,0.203977659483963,0.26721740526556,0.275684698604535,0,1.28823786971007,2.14371304124943,2.48750831837634,4.13731983447581,1.70587185520785,1.90451545170992,0.0645889098360061,0.372448285775147,1.00918676322552,1.90941474834495,2.42540626749863,0.653150243690884,2.73786640868225,0.404112318087525,0.932388670104793,4.65724499164419,0.976839223331694,1.06727345877715,19.307228228694,1.88632924423832,2.34640942403454,2.68931177202306,2.84827324821017,6.65756774185513,1.20764276154616,0.320568492303233 | |||
|short_description=p2@SOCS6 | |||
}} |
Latest revision as of 07:07, 20 September 2015
Short description: | p2@SOCS6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SOCS6_5end |
Coexpression cluster: | NA |
Association with transcript: | -8bp_to_NM_004232, uc002lkr.1_5end |
EntrezGene: | SOCS6 |
HGNC: | 16833 |
UniProt: | O14544 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 1.03e-13 | 223 |
neural plate | 1.17e-11 | 82 |
presumptive neural plate | 1.17e-11 | 82 |
neural tube | 2.74e-11 | 56 |
neural rod | 2.74e-11 | 56 |
future spinal cord | 2.74e-11 | 56 |
neural keel | 2.74e-11 | 56 |
structure with developmental contribution from neural crest | 5.88e-11 | 132 |
neurectoderm | 8.16e-11 | 86 |
nervous system | 1.54e-10 | 89 |
adult organism | 3.15e-10 | 114 |
brain | 7.54e-10 | 68 |
future brain | 7.54e-10 | 68 |
regional part of nervous system | 8.71e-10 | 53 |
regional part of brain | 8.71e-10 | 53 |
central nervous system | 2.01e-09 | 81 |
ecto-epithelium | 3.80e-09 | 104 |
ectoderm-derived structure | 2.01e-08 | 171 |
ectoderm | 2.01e-08 | 171 |
presumptive ectoderm | 2.01e-08 | 171 |
pre-chordal neural plate | 2.70e-07 | 61 |
embryo | 3.11e-07 | 592 |