FFCP PHASE1:Hg19::chr18:21166841..21166864,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4864 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7897 | |||
|TSSclassifier=strong | |||
|UniProt=O15118 | |||
|association_with_transcript=-260bp_to_NM_000271,uc002kum.3,uc010xba.1_5end | |||
|cluster_id=chr18:21166841..21166864,- | |||
|coexpression_cluster_id=C1660 | |||
|description=CAGE_peak_3_at_NPC1_5end | |||
|id=chr18:21166841..21166864,- | |||
|ontology_enrichment_celltype=CL:0000766!3.27e-20!76;CL:0002194!5.93e-19!63;CL:0000576!5.93e-19!63;CL:0000040!5.93e-19!63;CL:0000559!5.93e-19!63;CL:0002009!1.00e-18!65;CL:0002057!4.87e-18!42;CL:0000860!9.25e-18!45;CL:0000557!2.27e-16!71;CL:0000839!2.93e-15!70;CL:0000738!1.40e-09!140;CL:0002087!1.21e-08!119;CL:0002031!4.19e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000473;7.55e-18;39!CL:0000234;7.55e-18;39!CL:0000860;2.64e-17;33!CL:0002057;2.64e-17;33!CL:0000576;1.07e-11;48!CL:0000766;7.71e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.39e-22,48;CL:0000234,1.39e-22,48;CL:0000766,3.12e-21,72;CL:0002194,1.86e-20,59;CL:0000576,1.86e-20,59;CL:0000040,1.86e-20,59;CL:0000559,1.86e-20,59;CL:0002009,5.50e-20,61;CL:0000860,8.30e-19,42;CL:0002057,8.30e-19,42;CL:0000557,6.48e-17,67;CL:0000839,4.32e-16,66;CL:0000738,2.70e-11,136;CL:0002087,1.00e-10,115;CL:0002031,1.37e-08,120;CL:0000763,1.77e-08,108;CL:0000049,1.77e-08,108;CL:0000134,6.23e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;1.55e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!9.61e-17!80;UBERON:0001474!2.51e-16!86;UBERON:0002405!4.39e-16!115;UBERON:0001049!9.80e-15!57;UBERON:0005068!9.80e-15!57;UBERON:0006241!9.80e-15!57;UBERON:0007135!9.80e-15!57;UBERON:0004765!2.07e-13!101;UBERON:0001434!2.07e-13!101;UBERON:0002616!7.46e-13!59;UBERON:0002193!1.17e-12!112;UBERON:0000062!1.49e-12!511;UBERON:0003075!3.87e-12!86;UBERON:0007284!3.87e-12!86;UBERON:0000955!9.78e-12!69;UBERON:0006238!9.78e-12!69;UBERON:0002390!1.05e-11!102;UBERON:0003061!1.05e-11!102;UBERON:0003056!3.85e-11!61;UBERON:0003080!4.47e-11!42;UBERON:0002020!8.17e-11!34;UBERON:0003528!8.17e-11!34;UBERON:0002780!8.17e-11!41;UBERON:0001890!8.17e-11!41;UBERON:0006240!8.17e-11!41;UBERON:0001893!8.65e-11!34;UBERON:0005743!1.16e-10!86;UBERON:0002346!1.18e-10!90;UBERON:0002791!2.68e-10!33;UBERON:0001017!1.10e-09!82;UBERON:0001869!1.20e-09!32;UBERON:0000073!3.97e-09!94;UBERON:0001016!3.97e-09!94;UBERON:0000467!4.38e-09!625;UBERON:0000480!5.38e-09!626;UBERON:0000923!1.17e-08!604;UBERON:0005291!1.17e-08!604;UBERON:0006598!1.17e-08!604;UBERON:0002532!1.17e-08!604;UBERON:0002050!1.41e-08!605;UBERON:0005423!1.41e-08!605;UBERON:0000922!1.79e-08!612;UBERON:0000468!2.45e-08!659;UBERON:0000033!1.05e-07!123;UBERON:0002204!1.84e-07!167;UBERON:0000956!4.99e-07!25;UBERON:0000203!4.99e-07!25;UBERON:0002619!7.27e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;7.64e-11;34!UBERON:0003528;2.27e-10;34!UBERON:0002020;2.27e-10;34!UBERON:0002791;5.11e-10;32!UBERON:0001869;5.99e-10;32!UBERON:0002780;3.40e-09;41!UBERON:0001890;3.40e-09;41!UBERON:0000073;3.41e-08;53!UBERON:0002616;3.41e-08;53!UBERON:0000956;5.77e-08;25!UBERON:0000203;5.77e-08;25!UBERON:0002619;8.81e-08;22!UBERON:0001950;8.51e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.61e-17,76;UBERON:0001474,4.47e-17,82;UBERON:0001049,7.81e-16,56;UBERON:0005068,7.81e-16,56;UBERON:0006241,7.81e-16,56;UBERON:0007135,7.81e-16,56;UBERON:0002405,3.49e-15,93;UBERON:0000073,2.48e-14,53;UBERON:0002616,2.48e-14,53;UBERON:0004765,7.02e-14,90;UBERON:0002193,6.12e-13,108;UBERON:0003075,6.30e-13,82;UBERON:0007284,6.30e-13,82;UBERON:0000955,2.00e-12,68;UBERON:0006238,2.00e-12,68;UBERON:0001434,3.71e-12,100;UBERON:0003056,3.78e-12,61;UBERON:0002780,4.70e-12,41;UBERON:0001890,4.70e-12,41;UBERON:0003080,4.70e-12,41;UBERON:0006240,4.70e-12,41;UBERON:0002390,6.01e-12,98;UBERON:0003061,6.01e-12,98;UBERON:0003528,7.84e-12,34;UBERON:0002020,7.84e-12,34;UBERON:0001893,8.35e-12,34;UBERON:0002346,4.87e-11,86;UBERON:0002791,1.18e-10,32;UBERON:0001869,1.43e-10,32;UBERON:0001017,2.97e-10,81;UBERON:0010371,2.11e-09,104;UBERON:0001016,5.77e-09,89;UBERON:0000956,9.55e-08,25;UBERON:0000203,9.55e-08,25;UBERON:0010314,1.03e-07,132;UBERON:0002619,1.37e-07,22 | |||
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| |||
|short_description=p3@NPC1 | |||
}} |
Latest revision as of 23:49, 18 September 2015
Short description: | p3@NPC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NPC1_5end |
Coexpression cluster: | C1660_CD14_substantia_corpus_globus_thalamus_optic_spinal |
Association with transcript: | -260bp_to_NM_000271, uc002kum.3, uc010xba.1_5end |
EntrezGene: | NPC1 |
HGNC: | 7897 |
UniProt: | O15118 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.39e-22 | 48 |
phagocyte | 1.39e-22 | 48 |
myeloid leukocyte | 3.12e-21 | 72 |
monopoietic cell | 1.86e-20 | 59 |
monocyte | 1.86e-20 | 59 |
monoblast | 1.86e-20 | 59 |
promonocyte | 1.86e-20 | 59 |
macrophage dendritic cell progenitor | 5.50e-20 | 61 |
classical monocyte | 8.30e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.30e-19 | 42 |
granulocyte monocyte progenitor cell | 6.48e-17 | 67 |
myeloid lineage restricted progenitor cell | 4.32e-16 | 66 |
leukocyte | 2.70e-11 | 136 |
nongranular leukocyte | 1.00e-10 | 115 |
hematopoietic lineage restricted progenitor cell | 1.37e-08 | 120 |
myeloid cell | 1.77e-08 | 108 |
common myeloid progenitor | 1.77e-08 | 108 |
mesenchymal cell | 6.23e-07 | 354 |