FFCP PHASE1:Hg19::chr17:48263132..48263177,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr17:48263132..48263177,+ | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_at_chr17:48263132..48263177,+ | |||
|id=chr17:48263132..48263177,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.51e-34!180;CL:0000057!1.15e-27!75;CL:0000183!1.31e-10!59;CL:0000048!3.85e-10!430;CL:0000680!4.36e-10!57;CL:0000056!4.36e-10!57;CL:0000355!4.36e-10!57;CL:0000723!1.44e-09!436;CL:0002620!1.75e-09!23;CL:0000187!2.01e-09!54;CL:0000034!2.92e-09!444;CL:0002334!3.88e-09!12;CL:0000144!3.65e-08!625;CL:0002371!7.54e-08!591;CL:0000393!2.73e-07!60;CL:0000211!2.73e-07!60;CL:0002570!3.54e-07!8;CL:0000499!5.70e-07!27;CL:0000192!5.89e-07!42;CL:0000514!5.89e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000134;8.65e-12;55!CL:0002334;1.01e-11;12!CL:0000723;5.56e-10;61!CL:0000048;8.78e-10;58!CL:0002570;4.00e-09;8!CL:0002320;4.13e-09;188!CL:0000057;4.93e-09;73!CL:0000034;4.17e-08;69!CL:0002620;2.10e-07;23!CL:0002569;3.60e-07;6!CL:0000499;3.96e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.08e-23,76;CL:0000048,1.55e-15,427;CL:0000723,8.92e-15,433;CL:0000034,8.40e-14,441;CL:0002334,7.02e-12,12;CL:0002320,3.31e-11,361;CL:0000134,1.81e-09,354;CL:0002570,3.23e-09,8;CL:0000187,2.70e-08,55;CL:0000680,4.13e-08,58;CL:0000056,4.13e-08,58;CL:0000355,4.13e-08,58;CL:0000219,5.43e-08,386;CL:0002620,1.94e-07,23;CL:0000499,3.74e-07,28;CL:0002569,3.85e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.10e-11!83;UBERON:0002329!1.10e-11!83;UBERON:0003077!1.10e-11!83;UBERON:0003059!1.10e-11!83;UBERON:0007282!1.10e-11!83;UBERON:0009618!1.10e-11!83;UBERON:0007285!1.10e-11!83;UBERON:0004290!1.43e-10!70;UBERON:0001134!2.78e-10!61;UBERON:0002036!2.78e-10!61;UBERON:0003082!2.78e-10!61;UBERON:0002385!4.52e-10!63;UBERON:0001015!4.52e-10!63;UBERON:0000383!4.52e-10!63;UBERON:0005256!6.39e-09!143;UBERON:0000486!1.11e-08!82;UBERON:0001013!5.78e-08!14;UBERON:0002100!6.98e-07!216;UBERON:0002384!9.19e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;2.73e-09;198!UBERON:0001013;1.27e-08;14!UBERON:0003104;2.47e-08;7!UBERON:0009142;2.47e-08;7!UBERON:0004457;2.52e-07;9!UBERON:0000042;2.52e-07;9!UBERON:0003422;3.60e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.37e-11,371;UBERON:0001134,1.16e-08,62;UBERON:0002036,1.16e-08,62;UBERON:0003082,1.16e-08,62;UBERON:0001013,1.18e-08,14;UBERON:0002385,4.07e-08,64;UBERON:0001015,4.07e-08,64;UBERON:0000383,4.07e-08,64;UBERON:0007524,4.36e-08,73;UBERON:0007503,6.02e-08,78;UBERON:0002329,9.65e-08,71;UBERON:0003059,9.65e-08,71;UBERON:0007282,9.65e-08,71;UBERON:0004290,9.65e-08,71;UBERON:0009618,9.65e-08,71;UBERON:0003077,1.64e-07,72;UBERON:0007285,1.64e-07,72;UBERON:0003422,3.85e-07,6;UBERON:0003104,4.59e-07,160;UBERON:0009142,4.59e-07,160 | |||
|phase1_expression=3.81524596468169,5.56661362116556,3.38290569830331,3.00219895059391,4.91657203870017,6.10636966870258,10.1319951267324,0,0.261185628199839,0,0,0.218441372130172,2.63766978228454,2.10402800032079,1.65698687863958,0,3.01347264011988,0,2.43966399395253,1.35433163884467,3.06001036866379,3.13454721478088,0.286235987131057,0.273748850145768,0.627713197974014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.37770945674,3.70801429346238,14.4575660953827,3.00802746381534,12.6016471495917,0.795285947051099,3.89307896242109,0.189069634328136,1.99556457716308,2.3715392137144,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.8546536813753,4.17880688493113,2.25095607382472,19.5048902109193,9.930714701554,2.80338800071154,3.20246987189115,34.5334567784024,0.933633106199299,0.942974704487816,0.817309515567294,2.4217188423189,8.06646294271999,0.70296429550139,0.624320153660641,0,1.34503812496621,0.117434498643765,0.485618833104395,0.421352420106746,0.61246251376468,0.982674538494144,0.929932030581889,9.50402285825643,10.1379441004208,0.910161361938026,4.31170885089743,0.336672227908132,0.500474079487857,0,3.5118209670467,9.50112166976961,6.46023653298366,2.26864366320042,9.86642996288741,7.901623386287,1.90738711043606,12.0036438433761,1.95799805553034,7.21393512127762,1.48893485065272,7.08860595413318,1.36411807225678,8.83518209854401,3.22174645248048,2.26304479546337,13.1353549231147,1.41052937518696,1.52604533079439,0.193260853163297,0,0,0.243947412259191,0,0,0.10366105501537,0.252320850875628,0,0,9.00537313470039,0,1.85747171212792,5.0531563716871,0,0,0.241011029883482,0,0,0,0.269662616320329,0,0,0,5.60967095213783,3.2925920906512,23.5213938216867,0,0,0,0,0,1.54411029268673,0,0,0,0.0925884451585296,0.325808305310325,1.03993478527958,0,0.463721619900307,1.52631302506568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0.411309970813294,0,0,0.336393253036082,0.87192013766656,1.98013371716565,2.06834745212444,10.7296933755565,15.215449546008,3.19125739901845,4.16029747645464,2.82928111688356,0,3.46348832720929,9.29356958777959,17.3638913725262,5.76268235746538,5.21177894869976,3.909311436168,4.75171123760058,0.602878754119172,0,0.699810938274399,0,0,0,10.0642439306465,20.6751484501405,0,0.723906533337896,2.05476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,1.8403723757871,7.00238729483548,0.813795071099207,36.1869299063604,48.532684952828,27.2825178008707,5.27136367467209,0.601892199455438,0,4.1389228517002,7.3064815838898,4.60922921354258,0.868836144680828,2.93701736194111,6.51972505240626,0,0,0,0.303127571446259,4.99306318531491,12.0956117331872,4.71404834855676,6.59886485138669,22.1721474602128,5.76626171650654,3.58195074346692,29.918829332711,4.45254199334973,4.62629081407967,11.186388694727,1.64254312027618,4.67328986265259,3.95115286763861,0,0.200506470303285,0,3.09999010044438,6.55528204824181,4.98272776845812,0,0,0,0,0.105551628892876,0,0,0.215915916102139,3.08454505380579,1.35473218771926,3.51182841698397,0,0,0.447749509444357,0,0,0,0,0,0.103041011647722,1.19040304263846,0.495056999523528,0,0.650060246036521,8.03419649220798,1.45006077438183,0.462145851343933,0.921022048356777,0.689182862422653,1.18162269355101,1.59518363305651,1.61930592090592,13.6219014539508,0.165284915360978,0.192190067365106,0.127612712494584,0,1.85938219718914,22.9813013186367,0,2.15623506123262,0.532306030317022,0,0.37064843820784,0.286249773483982,2.232950216158,0,7.62520775695299,2.303080121802,1.71175595213568,0,0.78494864019923,1.97859703341646,4.39259247577688,3.53437207037059,0,3.17020642346017,0,5.36397112998549,2.92456187557541,1.05650146756755,2.8664981395677,9.19135307699133,0,0.551365343546124,3.3171948762061,0,2.31510213706675,3.9353685122798,0,1.8589409885985,0.563391205064483,3.01163839628508,6.68093478889224,0.7133421029625,0,9.07762831779956,8.56166721695745,0.75894634753143,3.14941248220485,0,0.670302275535787,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0.398495976502139,0,0,0,0,3.73247505194169,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,1.30815439456455,0.227884111694002,0,0.0897576444097721,0,0,1.28236630762607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,7.2231988256891,0,0,0,0,0,2.41981432097328,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0.19351266257817,0.146178634172371,0.0821154570532092,0.193978032976839,0.0882561266915003,14.4627674099541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71906176567983,0,0,0,0,0,0,0,1.20930250476107,10.4486966227297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.419636705079985,0,0,0,0,0,0.76280561296425,0,0,1.30634944043764,1.19730191562487,0,4.94125263177723,0,0.146552233678082,1.32506888912221,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0.235265819698172,0,0,5.37317290392747,7.94625253480563,3.88364103051829,1.32582103692562,2.0125432140206,6.22867855117575,0.686520205190771,3.4783112465545,3.10874401165561,0.73927574994817,0.955780602982214,2.69881867298163,1.55262956876259,2.48823724704513,5.3168342911599,3.1304703708704,9.16571414883032,4.56966254602554,0,2.00033525122815,3.86678005352958,1.39210127963548,4.77715066438339,1.20008329398946,8.24149692438703,6.73498977531838,1.26184898228651,0,0.214441591374926,0,0.906823702049089,0.926089897295336,0.97894681802587,0.358177682162975,0.617602894321944,2.19284049578707,0,0.578742114812744,0,0,0,0.911579868532147,0,0,0,0,3.93131818615695,0,0,0,0,0,0.567515953566836,0.552317850755522,0,0,0,0,0,0,0,0,0,0,7.31410006502863,0,0,20.4552047340597,4.593682160298,0,0,0,0,0,0,0,0,0,0,0,0,13.3483733413509,0,0.397832444232549,0.376051641746286,4.84092164888448,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,1.21393120847326,0,0.709618961301111,0,0,0,0,0,0,0.156986185701028,0.157115589916002,0,3.65263488203798,0,0,0,0,0,0,4.00855682365126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.799072156691,0.485710993059139,0,0,0,0,0,0,0,4.5897507705831,0,0.490296643507811,0,0,0,1.6906229103336,10.7054082253325,0,0.257831551894309,0,0,0,0,0.730336388246517,0,0,0,0,0,0.5290268405154,45.3833922163437,19.873552031151,44.1279093366265,0,0.109265571963696,0.253397002022874,0,0,0,0,0.303114792872958,0.267964130156178,0,0,0.426467963801962,4.99935306073855,0,0.0620747142958579,0.784923038064294,0,2.22328907854041,0,3.42233301085281,0,0.358611026963382,10.3124710529264,0,0,1.9307228228694,0,49.2745979047254,0.244482888365733,7.73102738799903,0,0,0 | |||
|short_description=p@chr17:48263132..48263177,+ | |||
}} |
Latest revision as of 18:31, 25 July 2015
Short description: | p@chr17:48263132..48263177, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:48263132..48263177, + |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.08e-23 | 76 |
multi fate stem cell | 1.55e-15 | 427 |
somatic stem cell | 8.92e-15 | 433 |
stem cell | 8.40e-14 | 441 |
preadipocyte | 7.02e-12 | 12 |
connective tissue cell | 3.31e-11 | 361 |
mesenchymal cell | 1.81e-09 | 354 |
mesenchymal stem cell of adipose | 3.23e-09 | 8 |
muscle cell | 2.70e-08 | 55 |
muscle precursor cell | 4.13e-08 | 58 |
myoblast | 4.13e-08 | 58 |
multi-potent skeletal muscle stem cell | 4.13e-08 | 58 |
motile cell | 5.43e-08 | 386 |
skin fibroblast | 1.94e-07 | 23 |
stromal cell | 3.74e-07 | 28 |
mesenchymal stem cell of umbilical cord | 3.85e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.37e-11 | 371 |
skeletal muscle tissue | 1.16e-08 | 62 |
striated muscle tissue | 1.16e-08 | 62 |
myotome | 1.16e-08 | 62 |
adipose tissue | 1.18e-08 | 14 |
muscle tissue | 4.07e-08 | 64 |
musculature | 4.07e-08 | 64 |
musculature of body | 4.07e-08 | 64 |
dense mesenchyme tissue | 4.36e-08 | 73 |
epithelial vesicle | 6.02e-08 | 78 |
somite | 9.65e-08 | 71 |
presomitic mesoderm | 9.65e-08 | 71 |
presumptive segmental plate | 9.65e-08 | 71 |
dermomyotome | 9.65e-08 | 71 |
trunk paraxial mesoderm | 9.65e-08 | 71 |
paraxial mesoderm | 1.64e-07 | 72 |
presumptive paraxial mesoderm | 1.64e-07 | 72 |
mesenchyme of umbilical cord | 3.85e-07 | 6 |
mesenchyme | 4.59e-07 | 160 |
entire embryonic mesenchyme | 4.59e-07 | 160 |