FFCP PHASE1:Hg19::chr17:48263008..48263015,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2197 | |||
|TSSclassifier=strong | |||
|UniProt=P02452 | |||
|association_with_transcript=-68bp_to_M32790,M32798_5end | |||
|cluster_id=chr17:48263008..48263015,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_34_at_COL1A1_5end | |||
|id=chr17:48263008..48263015,- | |||
|ontology_enrichment_celltype=CL:0000055!5.16e-31!180;CL:0000057!3.20e-23!75;CL:0000183!1.71e-11!59;CL:0000680!3.97e-11!57;CL:0000056!3.97e-11!57;CL:0000355!3.97e-11!57;CL:0000187!1.75e-10!54;CL:0000048!6.87e-10!430;CL:0000723!1.56e-09!436;CL:0002334!5.55e-09!12;CL:0000034!1.74e-08!444;CL:0000192!2.11e-08!42;CL:0000514!2.11e-08!42;CL:0002620!2.84e-08!23;CL:0000393!4.07e-08!60;CL:0000211!4.07e-08!60;CL:0000499!9.73e-08!27;CL:0002371!5.24e-07!591;CL:0000327!7.36e-07!14;CL:0002570!8.85e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002334;2.13e-11;12!CL:0000134;3.54e-11;55!CL:0000499;8.56e-11;28!CL:0000048;3.63e-10;58!CL:0000723;4.85e-10;61!CL:0002320;2.06e-09;188!CL:0000327;8.00e-09;15!CL:0002570;1.58e-08;8!CL:0000057;1.73e-08;73!CL:0000034;6.85e-08;69!CL:0002620;3.43e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.10e-22,76;CL:0000048,2.58e-14,427;CL:0000723,1.49e-13,433;CL:0000034,1.40e-12,441;CL:0002334,2.47e-11,12;CL:0002320,6.43e-11,361;CL:0000499,7.92e-11,28;CL:0000134,1.02e-09,354;CL:0000327,7.77e-09,15;CL:0002570,1.93e-08,8;CL:0000219,3.16e-08,386;CL:0002620,2.66e-07,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.56e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.76e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.21e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.05e-11!83;UBERON:0002329!1.05e-11!83;UBERON:0003077!1.05e-11!83;UBERON:0003059!1.05e-11!83;UBERON:0007282!1.05e-11!83;UBERON:0009618!1.05e-11!83;UBERON:0007285!1.05e-11!83;UBERON:0002385!1.65e-11!63;UBERON:0001015!1.65e-11!63;UBERON:0000383!1.65e-11!63;UBERON:0001134!2.85e-11!61;UBERON:0002036!2.85e-11!61;UBERON:0003082!2.85e-11!61;UBERON:0004290!1.45e-10!70;UBERON:0000486!6.92e-09!82;UBERON:0005256!1.37e-08!143;UBERON:0003102!4.39e-07!95;UBERON:0001013!5.86e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.47e-09;198!UBERON:0001013;3.78e-08;14!UBERON:0004457;2.89e-07;9!UBERON:0000042;2.89e-07;9!UBERON:0003104;4.84e-07;7!UBERON:0009142;4.84e-07;7!UBERON:0003688;6.00e-07;6!UBERON:0002358;6.00e-07;6!UBERON:0003684;6.00e-07;6!UBERON:0001178;6.00e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.11e-11,371;UBERON:0001013,4.54e-08,14;UBERON:0003688,7.15e-07,6;UBERON:0002358,7.15e-07,6;UBERON:0003684,7.15e-07,6;UBERON:0001178,7.15e-07,6 | |||
|phase1_expression=5.26867299884614,9.84862409898522,8.17535543756633,3.00219895059391,6.25745532198203,6.10636966870258,10.1319951267324,0.631719873426831,0,0.982935746006035,0,1.09220686065086,2.90143676051299,0.990130823680373,0.662794751455832,1.34465029290355,0,0,0.487932798790507,1.72369481307503,1.83600622119828,1.56727360739044,0,0.410623275218653,0.753255837568817,0.0764134057479513,0,0.157421562627358,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.02420515822182,1.91793842765295,8.67453965722959,1.50401373190767,8.11140506180613,5.5670016293577,2.91980922181582,0.661743720148475,2.66075276955077,1.75669571386252,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366403487860815,0,0,0,21.866765874594,3.29239330327907,1.32409180813219,22.3732564184075,4.25602058638028,1.68203280042692,3.20246987189115,14.3067178081953,0,0.942974704487816,0.653847612453835,4.8434376846378,5.18558332031999,0.234321431833797,0,0,0.747243402759005,0.117434498643765,0.161872944368132,0.140450806702248,0.816616685019573,0.982674538494144,1.13658359293342,9.50402285825643,12.6106133932064,4.55080680969013,4.31170885089743,0.168336113954066,0.750711119231785,0,5.70670907145089,4.29082914118628,4.8076178850111,1.81491493056034,12.5572744982203,8.5422955527427,4.87443372666992,8.10245959427886,5.66788910811414,11.5938243020533,5.21127197728451,7.59493495085698,4.57953924257634,8.83518209854401,7.82424138459544,5.01102776138317,11.3603069605317,2.92181084860157,1.86516651541536,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,0,9.64861407289328,0,2.78620756819187,3.60939740834793,0,0.168584690078102,0.241011029883482,0,0,0,0,0.196221465125346,0,0,0,7.4083322039652,14.7008711385542,0,0,0,0,0,1.54411029268673,0.109750285408626,0,0,0.185176890317059,0.977424915930974,0,2.88662684050547,0.231860809950154,1.17408694235822,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0.308482478109971,0,0,1.12131084345361,3.48768055066624,2.6401782895542,3.36106460970222,7.15312891703765,8.45302752556,6.64845291462176,0,0.514414748524284,4.25547396069835,1.5985330740966,14.2977993658148,19.5343777940919,3.29296134712308,3.25736184293735,8.88479871856365,1.58390374586686,0.301439377059586,0,0.699810938274399,0,0,0,5.5113716763064,20.6751484501405,0,1.01346914667305,2.05476322550383,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,2.57652132610194,4.00136416847742,1.35632511849868,21.2130278761423,32.6525049498806,17.1895632386989,6.91134348457008,1.50473049863859,4.5481500811197,3.10419213877515,3.98535359121262,1.29058417979192,2.08520674723399,2.15381273209015,7.20601190002797,0,0,0,0,9.98612637062982,5.74541557326393,7.69134204238208,6.59886485138669,19.3655465158821,11.6606625822688,7.16390148693385,27.6668744367005,10.3892646511494,4.1636617326717,7.10246901252508,2.95657761649713,4.15403543346897,1.27831416305955,0,0,0,3.21480454860899,4.00600569614778,3.67148361886388,0,0.0770153371044148,1.56869953835371,0,0,0,0,0.215915916102139,1.54227252690289,0.812839312631559,3.01013864312912,0,0,0,0,0,0,0.656029291399411,0,0.103041011647722,0.915694648183434,0.82509499920588,0.574265537996172,0,6.42735719376638,1.45006077438183,0.462145851343933,0.767518373630648,0.551346289938122,1.93356440762893,2.61030049045611,0.767039646744908,12.0193248123095,0.330569830721956,0,0.255225424989168,0.10115778085555,1.39453664789186,34.6293581513704,0.6970372701606,2.15623506123262,0.532306030317022,0,0.18532421910392,0.143124886741991,0.744316738719335,1.58189712359363,3.8126038784765,2.04718233049067,6.84702380854273,0.318203247925937,0.78494864019923,1.43897966066652,5.21620356498504,2.94531005864216,0.404364963146632,0,0,2.92580243453754,2.43713489631284,1.05650146756755,2.04749867111979,8.76713678113019,1.13008116620243,0.551365343546124,1.32687795048244,0,2.31510213706675,5.24715801637306,0.202910376962704,0.30982349809975,0.281695602532241,3.01163839628508,2.75097314836739,1.07001315444375,1.77380532035299,4.64436797654861,6.58589785919804,0.75894634753143,1.04980416073495,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,9.33118762985422,0,0,0,0.197286811273867,0,4.44547960578548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76985594558733,0.455768223388005,0,0,0.325942115766024,0.31900115973192,1.55715908783166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,16.0515529459758,0,0,0,0,0,1.20990716048664,0.61214552326098,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0,0,0,0,0.0969890164884194,0.176512253383001,12.4289407429293,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,1.15580235960608,0,0,0,4.29765441419957,0,1.11712960508902,0,0,0.599037001496973,0,0,0.671834724867263,9.7280968556449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472091293214983,0,0,0,0.714695326373367,0,0.5085370753095,1.08599920350743,1.72844298240254,2.61269888087527,0,0,4.94125263177723,0,0,0,0,0,0,0,0.213574825135389,0.78602152549833,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.40305258187307,16.3599316893057,6.10286447652875,3.21985108967651,4.0250864280412,0.889811221596536,2.05956061557231,4.99062048418689,9.17079483438405,1.62640664988597,3.02663857611035,1.79921244865442,2.63947026689641,4.56176828624941,4.78515086204391,4.69570555630561,17.5801402526746,5.71207818253193,4.06870733204662,5.09176245767166,7.4113284359317,1.85613503951397,11.1466848835612,1.20008329398946,6.18112269329027,6.39824028655246,0,0,0,0,1.58694147858591,0.463044948647668,0.489473409012935,0.358177682162975,0,1.09642024789354,0,0,0,0,0,0,0,0,0,0,3.60370833731054,0,0,0,0,0,0,0.736423801007363,0,0.622077260032973,0,0,0,0,0,0,0,0,5.72407831176153,0,0,13.7543618039367,3.3687002508852,0,0,0,0,0,0,0,0,0,0,0,0,12.2042270549493,0,1.5913297769302,0.300841313397029,6.65626726721616,0,0,0,0,0,0,0,0,0,0,1.48863353516788,0,0,0,0,0.606965604236632,0,0.266107110487916,0,0,0,0,0.118193840883968,0,0.078493092850514,0,0,10.0447459256045,0,0,0.142953088353313,0,0,0,12.827381835684,0,0,0.691259661814092,0,0,0,0.846774100381858,0,0,1.91107787795487,0,0,0,0,0,4.6392577253528,40.7997234169677,0,0,0,0,0,0,0.0771741581079447,3.0598338470554,0,0.735444965261716,0,0,0,6.339835913751,16.6528572394061,0.281951753939561,0.644578879735772,0,0,0,0,5.11235471772562,0,0,0,0,1.30905207102113,5.290268405154,47.9873573435109,16.1761470020996,32.4469921592842,0,0,0.126698501011437,0,0,0,0,0.151557396436479,0,0,0,0.639701945702943,6.90386851244847,0,0.248298857183432,0.224263725161227,0.12729431655633,2.22328907854041,0,2.73786640868225,0,0.0717222053926763,8.64916927019635,0,0,13.5150597600858,0,44.5817790566563,1.22241444182866,4.47585796147312,0.665756774185513,0.402547587182052,0 | |||
|short_description=p34@COL1A1 | |||
}} |
Latest revision as of 23:39, 15 September 2015
Short description: | p34@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_34_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -68bp_to_M32790, M32798_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | P02452 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.10e-22 | 76 |
multi fate stem cell | 2.58e-14 | 427 |
somatic stem cell | 1.49e-13 | 433 |
stem cell | 1.40e-12 | 441 |
preadipocyte | 2.47e-11 | 12 |
connective tissue cell | 6.43e-11 | 361 |
stromal cell | 7.92e-11 | 28 |
mesenchymal cell | 1.02e-09 | 354 |
extracellular matrix secreting cell | 7.77e-09 | 15 |
mesenchymal stem cell of adipose | 1.93e-08 | 8 |
motile cell | 3.16e-08 | 386 |
skin fibroblast | 2.66e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.11e-11 | 371 |
adipose tissue | 4.54e-08 | 14 |
omentum | 7.15e-07 | 6 |
peritoneum | 7.15e-07 | 6 |
abdominal cavity | 7.15e-07 | 6 |
visceral peritoneum | 7.15e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.21e-09 | 14 |