FFCP PHASE1:Hg19::chr8:39770912..39770930,+: Difference between revisions
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|id=chr8:39770912..39770930,+
|short_description=p5@IDO1
|description=CAGE_peak_5_at_IDO1_5end
|association_with_transcript=109bp_to_ENST00000518237_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3620 | |EntrezGene=3620 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6059 | |HGNC=6059 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=109bp_to_ENST00000518237_5end | |||
|cluster_id=chr8:39770912..39770930,+ | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_5_at_IDO1_5end | |||
|id=chr8:39770912..39770930,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.18e-46!42;CL:0000860!3.07e-43!45;CL:0002009!2.42e-34!65;CL:0000557!4.61e-31!71;CL:0002194!4.86e-29!63;CL:0000576!4.86e-29!63;CL:0000040!4.86e-29!63;CL:0000559!4.86e-29!63;CL:0000839!1.01e-25!70;CL:0000453!3.21e-25!5;CL:0000763!7.79e-24!112;CL:0000049!7.79e-24!112;CL:0000766!2.31e-23!76;CL:0000738!2.00e-21!140;CL:0002031!1.97e-17!124;CL:0002087!1.63e-16!119;CL:0000037!2.26e-16!172;CL:0000566!2.26e-16!172;CL:0002032!7.37e-16!165;CL:0000837!7.37e-16!165;CL:0000988!3.72e-15!182;CL:0000990!6.10e-14!8;CL:0001014!1.76e-11!2;CL:0001016!1.76e-11!2;CL:0000451!2.28e-11!10 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.40e-86;33!CL:0002057;2.40e-86;33!CL:0000473;1.47e-57;39!CL:0000234;1.47e-57;39!CL:0000576;1.60e-40;48!CL:0000766;1.23e-20;69!CL:0000763;3.95e-13;100!CL:0002087;2.08e-12;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.23e-73,42;CL:0002057,1.23e-73,42;CL:0000473,2.94e-64,48;CL:0000234,2.94e-64,48;CL:0002194,4.05e-51,59;CL:0000576,4.05e-51,59;CL:0000040,4.05e-51,59;CL:0000559,4.05e-51,59;CL:0002009,2.01e-49,61;CL:0000839,1.26e-45,66;CL:0000557,6.23e-45,67;CL:0000766,9.44e-42,72;CL:0000763,1.91e-27,108;CL:0000049,1.91e-27,108;CL:0002087,1.09e-25,115;CL:0002031,1.46e-24,120;CL:0000738,1.69e-21,136;CL:0002032,6.43e-18,161;CL:0000837,6.43e-18,161;CL:0000037,4.19e-17,168;CL:0000988,3.76e-16,177;CL:0000134,3.77e-07,354;CL:0002320,5.67e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.80e-50;42!CL:0000049;2.36e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.71e-27!80;UBERON:0001474!7.65e-25!86;UBERON:0002390!1.88e-24!102;UBERON:0003061!1.88e-24!102;UBERON:0002193!8.21e-22!112;UBERON:0004765!1.87e-20!101;UBERON:0001434!1.87e-20!101;UBERON:0002405!2.20e-17!115;UBERON:0002204!6.59e-13!167;UBERON:0003081!8.08e-09!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.67e-39,76;UBERON:0001474,1.55e-36,82;UBERON:0004765,3.45e-33,90;UBERON:0002405,4.44e-32,93;UBERON:0002390,2.23e-30,98;UBERON:0003061,2.23e-30,98;UBERON:0001434,9.56e-30,100;UBERON:0002193,1.91e-27,108;UBERON:0002204,3.24e-17,167;UBERON:0003081,7.27e-14,203;UBERON:0000926,2.79e-08,315;UBERON:0004120,2.79e-08,315;UBERON:0006603,2.79e-08,315;UBERON:0002384,9.92e-07,371 | |||
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|short_description=p5@IDO1 | |||
}} | }} |
Latest revision as of 05:13, 18 September 2015
Short description: | p5@IDO1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_IDO1_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 109bp_to_ENST00000518237_5end |
EntrezGene: | IDO1 |
HGNC: | 6059 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.23e-73 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.23e-73 | 42 |
defensive cell | 2.94e-64 | 48 |
phagocyte | 2.94e-64 | 48 |
monopoietic cell | 4.05e-51 | 59 |
monocyte | 4.05e-51 | 59 |
monoblast | 4.05e-51 | 59 |
promonocyte | 4.05e-51 | 59 |
macrophage dendritic cell progenitor | 2.01e-49 | 61 |
myeloid lineage restricted progenitor cell | 1.26e-45 | 66 |
granulocyte monocyte progenitor cell | 6.23e-45 | 67 |
myeloid leukocyte | 9.44e-42 | 72 |
myeloid cell | 1.91e-27 | 108 |
common myeloid progenitor | 1.91e-27 | 108 |
nongranular leukocyte | 1.09e-25 | 115 |
hematopoietic lineage restricted progenitor cell | 1.46e-24 | 120 |
leukocyte | 1.69e-21 | 136 |
hematopoietic oligopotent progenitor cell | 6.43e-18 | 161 |
hematopoietic multipotent progenitor cell | 6.43e-18 | 161 |
hematopoietic stem cell | 4.19e-17 | 168 |
hematopoietic cell | 3.76e-16 | 177 |
mesenchymal cell | 3.77e-07 | 354 |
connective tissue cell | 5.67e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.67e-39 | 76 |
bone element | 1.55e-36 | 82 |
skeletal element | 3.45e-33 | 90 |
immune system | 4.44e-32 | 93 |
hematopoietic system | 2.23e-30 | 98 |
blood island | 2.23e-30 | 98 |
skeletal system | 9.56e-30 | 100 |
hemolymphoid system | 1.91e-27 | 108 |
musculoskeletal system | 3.24e-17 | 167 |
lateral plate mesoderm | 7.27e-14 | 203 |
mesoderm | 2.79e-08 | 315 |
mesoderm-derived structure | 2.79e-08 | 315 |
presumptive mesoderm | 2.79e-08 | 315 |
connective tissue | 9.92e-07 | 371 |