FFCP PHASE1:Hg19::chr17:29815148..29815171,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84440 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30267 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=72bp_to_uc002hgo.2_5end | |||
|cluster_id=chr17:29815148..29815171,+ | |||
|description=CAGE_peak_4_at_RAB11FIP4_5end | |||
|id=chr17:29815148..29815171,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.37e-29!140;CL:0002031!3.19e-24!124;CL:0002087!1.51e-22!119;CL:0000037!1.52e-20!172;CL:0000566!1.52e-20!172;CL:0002032!3.82e-19!165;CL:0000837!3.82e-19!165;CL:0000988!3.45e-18!182;CL:0000766!6.89e-16!76;CL:0002057!2.02e-15!42;CL:0000860!4.50e-13!45;CL:0000557!1.14e-12!71;CL:0000839!4.43e-12!70;CL:0002009!1.49e-11!65;CL:0000838!1.63e-11!52;CL:0000791!3.62e-11!18;CL:0000789!3.62e-11!18;CL:0002420!3.62e-11!18;CL:0002419!3.62e-11!18;CL:0000790!3.62e-11!18;CL:0000542!6.18e-11!53;CL:0000051!6.18e-11!53;CL:0002194!1.01e-10!63;CL:0000576!1.01e-10!63;CL:0000040!1.01e-10!63;CL:0000559!1.01e-10!63;CL:0000763!3.37e-09!112;CL:0000049!3.37e-09!112;CL:0000625!2.59e-07!11;CL:0000084!5.68e-07!25;CL:0000827!5.68e-07!25;CL:0000094!7.56e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.49e-13;18!CL:0000789;1.49e-13;18!CL:0002419;1.49e-13;18!CL:0000860;1.82e-12;33!CL:0002057;1.82e-12;33!CL:0000576;1.42e-09;48!CL:0000766;3.29e-09;69!CL:0000473;6.97e-09;39!CL:0000234;6.97e-09;39!CL:0000625;1.01e-08;11!CL:0002087;1.57e-08;104!CL:0000084;1.92e-08;25!CL:0000094;4.33e-08;8!CL:0000738;1.17e-07;136!CL:0000542;2.22e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,6.22e-35,136;CL:0002031,5.07e-29,120;CL:0002087,3.92e-27,115;CL:0000037,2.74e-23,168;CL:0002032,9.51e-22,161;CL:0000837,9.51e-22,161;CL:0000766,1.11e-20,72;CL:0000988,3.11e-20,177;CL:0000860,4.32e-18,42;CL:0002057,4.32e-18,42;CL:0000557,1.66e-16,67;CL:0000839,9.68e-16,66;CL:0000473,1.13e-15,48;CL:0000234,1.13e-15,48;CL:0002009,4.04e-15,61;CL:0002194,4.87e-14,59;CL:0000576,4.87e-14,59;CL:0000040,4.87e-14,59;CL:0000559,4.87e-14,59;CL:0000791,1.87e-13,18;CL:0000789,1.87e-13,18;CL:0002420,1.87e-13,18;CL:0002419,1.87e-13,18;CL:0000790,1.87e-13,18;CL:0000838,4.02e-12,52;CL:0000542,1.23e-11,53;CL:0000051,1.23e-11,53;CL:0000763,9.22e-11,108;CL:0000049,9.22e-11,108;CL:0000625,1.09e-08,11;CL:0000084,2.43e-08,25;CL:0000827,2.43e-08,25;CL:0000094,4.10e-08,8 | |||
|ontology_enrichment_development_v019=CL:0000790;1.49e-13;18!CL:0002057;2.06e-13;42!CL:0000051;2.22e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.07e-28!115;UBERON:0002390!1.06e-16!102;UBERON:0003061!1.06e-16!102;UBERON:0002193!9.23e-14!112;UBERON:0001049!6.07e-12!57;UBERON:0005068!6.07e-12!57;UBERON:0006241!6.07e-12!57;UBERON:0007135!6.07e-12!57;UBERON:0002780!2.83e-10!41;UBERON:0001890!2.83e-10!41;UBERON:0006240!2.83e-10!41;UBERON:0003080!2.96e-10!42;UBERON:0002371!2.17e-09!80;UBERON:0001474!4.71e-09!86;UBERON:0002616!7.49e-09!59;UBERON:0001893!8.90e-09!34;UBERON:0002020!1.28e-08!34;UBERON:0003528!1.28e-08!34;UBERON:0000178!2.20e-08!15;UBERON:0000179!2.20e-08!15;UBERON:0000463!2.20e-08!15;UBERON:0002791!2.35e-08!33;UBERON:0000955!6.23e-08!69;UBERON:0006238!6.23e-08!69;UBERON:0001869!6.75e-08!32;UBERON:0002619!1.65e-07!22;UBERON:0001017!1.66e-07!82;UBERON:0005743!2.61e-07!86;UBERON:0002405!3.79e-07!115;UBERON:0001950!3.87e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;6.46e-09;34!UBERON:0002619;1.11e-08;22!UBERON:0007023;1.14e-08;114!UBERON:0003528;1.95e-08;34!UBERON:0002020;1.95e-08;34!UBERON:0002780;2.57e-08;41!UBERON:0001890;2.57e-08;41!UBERON:0001869;2.95e-08;32!UBERON:0001950;3.48e-08;20!UBERON:0002791;3.52e-08;32!UBERON:0000178;4.73e-08;15!UBERON:0000179;4.73e-08;15!UBERON:0000463;4.73e-08;15!UBERON:0000073;1.35e-07;53!UBERON:0002616;1.35e-07;53!UBERON:0000956;6.40e-07;25!UBERON:0000203;6.40e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.29e-27,114;UBERON:0002390,1.49e-20,98;UBERON:0003061,1.49e-20,98;UBERON:0002193,5.73e-18,108;UBERON:0001049,2.96e-14,56;UBERON:0005068,2.96e-14,56;UBERON:0006241,2.96e-14,56;UBERON:0007135,2.96e-14,56;UBERON:0000073,1.49e-13,53;UBERON:0002616,1.49e-13,53;UBERON:0002371,1.92e-12,76;UBERON:0002405,2.61e-12,93;UBERON:0002780,1.28e-11,41;UBERON:0001890,1.28e-11,41;UBERON:0003080,1.28e-11,41;UBERON:0006240,1.28e-11,41;UBERON:0001474,2.22e-11,82;UBERON:0001893,2.68e-10,34;UBERON:0003528,4.17e-10,34;UBERON:0002020,4.17e-10,34;UBERON:0000955,2.21e-09,68;UBERON:0006238,2.21e-09,68;UBERON:0001869,3.23e-09,32;UBERON:0002791,3.55e-09,32;UBERON:0004765,6.34e-09,90;UBERON:0002619,9.10e-09,22;UBERON:0001950,2.63e-08,20;UBERON:0001017,4.31e-08,81;UBERON:0000178,5.15e-08,15;UBERON:0000179,5.15e-08,15;UBERON:0000463,5.15e-08,15;UBERON:0001434,4.51e-07,100;UBERON:0000956,5.43e-07,25;UBERON:0000203,5.43e-07,25 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,2.45733936501509,1.39560233594486,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29240217243854,1.31360943119913,1.33808328233255,12.194292582316,5.75744097145819,7.7408061658038,0,0.6024118375565,0.739508020333575,1.62681121218633,0.568676929949686,0.293600439334847,2.76997704265939,6.41742231904453,8.89744569934992,0.223915474239924,1.94336199611388,0.515151135268373,12.5042485350426,17.0044174659964,21.3473973845278,3.48643555358527,3.28934310417461,3.71647645074124,2.3015391385772,4.35473201099471,3.54723344832878,2.41321976515633,5.16387746867061,4.06279459783025,8.094420600332,3.27487380069415,2.24723484445085,3.36692281607993,2.88836124368484,5.11469700639233,4.28806690242731,6.38283704389222,8.95071976118658,0.580418477257168,1.13477044938228,1.24564449799115,4.27122730936464,2.08593167368081,4.56096573880745,1.21079900526674,3.31449872388808,2.21523671208619,6.12640330304631,6.80333759888139,6.28975936525128,4.15615935242032,4.6554836780867,5.30394436100364,7.41033133727246,6.56425034756997,10.2291926108195,7.03984977845291,3.27683166757279,5.33705552318133,6.40095333849761,4.80475184443215,3.4485146397269,7.27149360063348,4.77026877267682,11.9534723512984,5.28513470433845,8.41001101875504,0,5.60508562981536,0.790152254325231,9.04864942523632,8.25322601773246,10.074473450976,7.02183280640848,12.0591238654428,12.7830907548378,7.79306913631645,3.89936599098108,11.1950244840438,9.52595746709571,4.87446954777028,5.63601806792971,6.24284868287415,3.12432018746985,2.76350017785848,2.60822777161547,10.2317728581822,7.22360235842225,10.4535523804977,3.28597093822942,8.81407135284419,8.24705869158312,5.31341353240956,5.41561204350964,6.51083453856419,5.70271226669025,9.18508226374414,7.55121005811069,6.24653632761729,6.86654030927649,8.21127996921047,13.3060450528323,12.0348088102578,14.3376159843971,0,0,0,0,0,0,2.3858578411533,13.6257763684738,0,0.221729397462564,0.43917392846563,9.10304574709103,0.364295288292542,0.741568885568859,7.46459005405772,10.7960437125546,6.51494006542439,4.05434061319081,4.0039643754609,4.08603251462521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.2629085333764,38.7780264148325,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,1.35282597214308,0,1.43402297694502,0.609868530647977,0.132529768321485,0.69716365721711,1.14027160516907,0.504641701751257,0.72995471815166,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0.982827216677626,0,0,13.03677448557,0,0.658501712451753,1.1240175325762,0.703702806881416,0.555530670951178,0,0,0,0.115930404975077,0,0,0,0,7.11183958163348,7.72637545885385,0.492434012174795,3.51006397708857,0.891786973732369,0,0.839910640994298,0.141775097242386,0.0895585227028483,0,0,1.97065295158377,4.66656700270098,2.90259361757081,1.00883967391873,2.01987893482208,0.063497894292169,0,0,0,0,0.300343057843917,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0.299918973546171,1.2162378064119,0,0,0,0,0,0,0,0,4.03506518376698,12.6099686529233,13.1532820664306,16.9412807889268,0,0,1.54657762555539,0.335032530668698,0,41.9443933410422,47.865833472644,34.810903128627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.20304078368662,8.41285383192606,7.04401881502733,2.72814814301633,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,6.16383192917273,4.41114234667227,0.184161977871793,0,0,0,1.35359883872224,1.07821471946181,0,0,0.422206515571503,0,0,0,0,0,0.501689773854853,1.01950509218015,0.831076008928724,0.223874754722178,2.63111851975121,1.5686127061494,0,0.328014645699706,0.325378394664303,2.47298427954533,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0.661139661443912,0.192190067365106,0.127612712494584,1.2138933702666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0.288666338176536,0,0,2.16530741786592,3.01353760869861,1.68471475667626,2.66058092122005,1.37834040124176,15.7308758861972,26.7623022499831,17.0894156152249,13.3409794256362,20.1567513812235,21.3996192693597,17.8210374288578,19.0350042310625,1.6023610669121,0,1.22520107990516,0,0,0,0.159426272728822,0,0.191505370132367,0.423347165447766,0.324621940274555,0.561594356226918,0,0,0,0.169291777801603,0,0,1.27753871307098,0.343505344755765,0,0,0.166849141711909,0,0,0,0,0,0,3.18138918693974,0.293016358543788,0.121360521749513,0.222886768554957,0,3.81991175580304,2.07875276582847,1.53580351049616,5.96488588659779,3.79807424308384,0,0,3.1668811219199,1.19548792950642,6.63081397274754,1.51159648712566,0,0.984678443688556,0,0.0898683511473268,0.358042349351218,0,0.690503839458535,16.7638164642858,0,14.5399911914283,6.95760736213884,1.99613798001194,3.38556089410803,1.04951999995435,0.724999575434793,1.0241410345695,1.01701460117107,0.472775363535873,0.344743373241465,0,0,6.20018970069687,0.964771509003264,3.05163472634166,1.87984741883082,2.65992857058193,4.16832254592548,0,4.0432885840795,0.461701551022782,0,10.3753756974627,5.20594337576678,27.487785096268,4.14701507651495,0.0915975934018623,2.13213910407454,0,0.470940769185074,0,0.225595660617181,0,0.335643173951685,0,0,0.210998064528027,1.46909527343233,8.62253735747039,0.216388639742091,3.98104772431402,8.75729888583058,1.22206028986725,0.593042257361244,0.617819694732514,0.313265848516366,9.36875748431411,1.60515529459758,10.7761645033656,0.729819156862664,1.17398771359254,0,7.49710365413842,7.25944296291983,0.61214552326098,0.947798694427319,1.20258735531594,0.207376382794494,0,0.330991955875499,0,0,0.569219092059585,0,7.63662848674576,3.13575671726008,0.69647365264322,8.21215340737542,0,0,0,0,0.775912131907355,2.29465929397901,4.06765333404958,0,0,6.90087675919078,2.15106521008283,0.0801588202515337,2.77488893161158,1.39866726707491,1.15272333723285,0,1.02956998717179,0,0.124252535565433,0.707082103850386,0,0,0,0.577901179803038,7.80546375322726,7.66670121795161,1.27746588066972,0,0,0,0.687481272035051,0,0.998395002494955,3.43380838509257,1.78537165953498,0.134366944973453,0,11.6495949527454,14.811238273758,14.0106959247983,11.8630237183365,1.47641222272123,0,2.38568906942791,2.17925449778521,0.321506296930038,0.825236619583403,0,4.94942561413301,13.1546332274851,5.77120788251234,2.34804281319486,2.75819975547194,1.67854682031994,0,0,0,0,1.32418394073086,1.27134268827375,0,0,0,0,0,0,0,0.879313402068495,0,8.14482625077768,3.83474545053801,0,0.704815022316672,1.38823636338003,0.943225830597996,2.48543433208317,5.95399226174341,0.592834895693833,0,0.638341257770182,0.544017803369474,0,0,0,0.785270481251171,2.65820453990096,4.39294553647067,3.6305369904885,7.45431954397093,3.32787154610557,5.96125468237281,0.415045904808692,0.124980407962107,1.21319294033318,0.285465333544967,0.235265819698172,0,2.3187364577732,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463044948647668,0,0,0.926404341482917,1.75427239662966,0.176689145945881,0.578742114812744,0,0.76872455576384,0,0,5.80685431837269,0.974301544196942,0.398594520940089,1.14495775979091,0,0,0.422624246717254,1.19992437512958,0.213383459388282,0.344429959321631,0,0,0.419638523158333,1.24415452006595,0.127894371303652,0.215649622793364,0.157265941855896,0.109209638192014,0.678930119816101,0,0.247871528518004,0,0,0.23658523500376,1.60114149657094,0.352675943690684,0,6.74406863512825,7.08482881627925,5.58718506700029,9.84558548355624,0,10.6502168794896,5.81312324274664,9.99385941814081,1.27592034051333,0.589848616738702,1.46742878817343,0.924205329202706,0,0,1.39241355481392,0.752103283492572,0,7.81514011233093,14.6667748909597,0,2.51355346568977,6.75375846183946,2.34323429584154,5.78723030203315,5.96108615822724,0,2.19303106742873,0.496211178389294,0.175871244359621,0.127762427639595,1.07140367175657,1.00885116665647,1.82089681270989,0.682986574053893,4.87863035894514,3.22655165156182,0,5.7774273030307,8.09005114823044,0.354581522651905,0.111231401892069,0.627944742804112,1.72827148907602,4.76462677633441,0.913158720509496,0.215927591218621,0,2.287249413653,0.158013611732727,0.116241425368125,0.173858272302579,0,0.414432328326074,0,2.76503864725637,3.8720462293825,0,0,4.23387050190929,1.60374807980835,0,0,10.4025551571947,2.84635677484205,5.73014247416666,0,0,0,2.4285549652957,1.16969731731053,0.795803100645473,0,0.79062257427272,0.329821550236287,0.452888530700021,9.02937649862952,3.0598338470554,0.940634592723046,0,0.235676547101626,3.92616934229891,1.78227840196252,1.2679671827502,0,2.72553362141575,1.4180735354187,3.29805814552265,1.2498775702396,0.352894871715692,1.84555143385087,2.19100916473955,0.917458566809082,5.8769229092095,0.157771562193185,10.1987235286372,0.436350690340377,4.7612415646386,0,0,0,0,0.109265571963696,1.90047751517155,0.61193297845189,0.801652215796681,0.0918948995348449,0.50141507858475,10.0027881648076,19.561381501401,5.80418607621146,5.68881477240424,2.13233981900981,0.23806443146374,1.80848947540817,1.42771842880473,0,1.14564884900697,0.808468755832877,0.217716747896961,0.342233301085281,5.65757245322535,1.07583308089015,0.99798106963804,0.0814032686109745,0.106727345877715,0,0,0,0.733448665097199,2.03448089157869,0,3.42165449104745,0.320568492303233 | |||
|short_description=p4@RAB11FIP4 | |||
}} |
Latest revision as of 11:37, 19 September 2015
Short description: | p4@RAB11FIP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RAB11FIP4_5end |
Coexpression cluster: | NA |
Association with transcript: | 72bp_to_uc002hgo.2_5end |
EntrezGene: | RAB11FIP4 |
HGNC: | 30267 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 9.29e-27 | 114 |
hematopoietic system | 1.49e-20 | 98 |
blood island | 1.49e-20 | 98 |
hemolymphoid system | 5.73e-18 | 108 |
neural tube | 2.96e-14 | 56 |
neural rod | 2.96e-14 | 56 |
future spinal cord | 2.96e-14 | 56 |
neural keel | 2.96e-14 | 56 |
regional part of nervous system | 1.49e-13 | 53 |
regional part of brain | 1.49e-13 | 53 |
bone marrow | 1.92e-12 | 76 |
immune system | 2.61e-12 | 93 |
regional part of forebrain | 1.28e-11 | 41 |
forebrain | 1.28e-11 | 41 |
anterior neural tube | 1.28e-11 | 41 |
future forebrain | 1.28e-11 | 41 |
bone element | 2.22e-11 | 82 |
telencephalon | 2.68e-10 | 34 |
brain grey matter | 4.17e-10 | 34 |
gray matter | 4.17e-10 | 34 |
brain | 2.21e-09 | 68 |
future brain | 2.21e-09 | 68 |
cerebral hemisphere | 3.23e-09 | 32 |
regional part of telencephalon | 3.55e-09 | 32 |
skeletal element | 6.34e-09 | 90 |
regional part of cerebral cortex | 9.10e-09 | 22 |
neocortex | 2.63e-08 | 20 |
central nervous system | 4.31e-08 | 81 |
blood | 5.15e-08 | 15 |
haemolymphatic fluid | 5.15e-08 | 15 |
organism substance | 5.15e-08 | 15 |
skeletal system | 4.51e-07 | 100 |
cerebral cortex | 5.43e-07 | 25 |
pallium | 5.43e-07 | 25 |