FFCP PHASE1:Hg19::chr17:2206801..2206845,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23293 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17809 | |||
|TSSclassifier=strong | |||
|UniProt=Q86US8,Q9H7Y8 | |||
|association_with_transcript=0bp_to_ENST00000544865,NM_001170957,uc002fud.1_5end | |||
|cluster_id=chr17:2206801..2206845,- | |||
|description=CAGE_peak_2_at_SMG6_5end | |||
|id=chr17:2206801..2206845,- | |||
|ontology_enrichment_celltype=CL:0000220!9.43e-11!246;CL:0000222!3.51e-10!119;CL:0002321!3.52e-10!248;CL:0002078!3.04e-07!44;CL:0000055!6.14e-07!180;CL:0000213!9.00e-07!57;CL:0000215!9.00e-07!57 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.28e-10,121;CL:0002321,1.78e-10,250;CL:0002078,1.95e-07,45;CL:0000213,6.48e-07,58;CL:0000215,6.48e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!4.26e-18!365;UBERON:0000119!1.50e-16!312;UBERON:0000483!2.96e-16!309;UBERON:0000477!1.61e-15!286;UBERON:0004111!2.91e-15!241;UBERON:0000468!3.59e-14!659;UBERON:0000481!1.13e-13!347;UBERON:0002049!1.23e-12!79;UBERON:0007798!1.23e-12!79;UBERON:0000467!2.89e-12!625;UBERON:0000480!3.55e-12!626;UBERON:0004872!5.20e-10!84;UBERON:0000055!7.26e-10!69;UBERON:0000025!1.87e-09!194;UBERON:0002100!4.13e-09!216;UBERON:0003914!5.61e-09!118;UBERON:0001981!2.27e-08!60;UBERON:0007500!2.27e-08!60;UBERON:0004537!2.27e-08!60;UBERON:0006965!2.27e-08!60;UBERON:0002050!2.33e-08!605;UBERON:0005423!2.33e-08!605;UBERON:0000923!4.15e-08!604;UBERON:0005291!4.15e-08!604;UBERON:0006598!4.15e-08!604;UBERON:0002532!4.15e-08!604;UBERON:0009569!4.43e-08!113;UBERON:0001009!4.47e-08!113;UBERON:0000922!4.96e-08!612;UBERON:0001008!7.50e-08!45;UBERON:0004535!1.21e-07!110;UBERON:0003103!1.36e-07!69;UBERON:0006554!2.25e-07!44 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,3.19e-16,309;UBERON:0000483,6.26e-16,306;UBERON:0004111,1.08e-14,240;UBERON:0002049,3.53e-12,78;UBERON:0007798,3.53e-12,78;UBERON:0004872,1.33e-09,83;UBERON:0000055,1.96e-09,68;UBERON:0000025,5.23e-09,192;UBERON:0003914,9.64e-09,117;UBERON:0002100,2.38e-08,199;UBERON:0003104,3.20e-08,160;UBERON:0009142,3.20e-08,160;UBERON:0000922,5.35e-08,592;UBERON:0009569,5.49e-08,112;UBERON:0005423,5.89e-08,581;UBERON:0007500,5.99e-08,59;UBERON:0001981,5.99e-08,59;UBERON:0004537,5.99e-08,59;UBERON:0006965,5.99e-08,59;UBERON:0001008,6.10e-08,48;UBERON:0001009,9.00e-08,112;UBERON:0006554,1.80e-07,47;UBERON:0004535,2.41e-07,109;UBERON:0003103,2.60e-07,68 | |||
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| |||
|short_description=p2@SMG6 | |||
}} |
Latest revision as of 02:53, 19 September 2015
Short description: | p2@SMG6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SMG6_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000544865, NM_001170957, uc002fud.1_5end |
EntrezGene: | SMG6 |
HGNC: | 17809 |
UniProt: | Q86US8Q9H7Y8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.28e-10 | 121 |
embryonic cell | 1.78e-10 | 250 |
meso-epithelial cell | 1.95e-07 | 45 |
lining cell | 6.48e-07 | 58 |
barrier cell | 6.48e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
cell layer | 3.19e-16 | 309 |
epithelium | 6.26e-16 | 306 |
anatomical conduit | 1.08e-14 | 240 |
vasculature | 3.53e-12 | 78 |
vascular system | 3.53e-12 | 78 |
splanchnic layer of lateral plate mesoderm | 1.33e-09 | 83 |
vessel | 1.96e-09 | 68 |
tube | 5.23e-09 | 192 |
epithelial tube | 9.64e-09 | 117 |
trunk | 2.38e-08 | 199 |
mesenchyme | 3.20e-08 | 160 |
entire embryonic mesenchyme | 3.20e-08 | 160 |
embryo | 5.35e-08 | 592 |
subdivision of trunk | 5.49e-08 | 112 |
developing anatomical structure | 5.89e-08 | 581 |
epithelial tube open at both ends | 5.99e-08 | 59 |
blood vessel | 5.99e-08 | 59 |
blood vasculature | 5.99e-08 | 59 |
vascular cord | 5.99e-08 | 59 |
renal system | 6.10e-08 | 48 |
circulatory system | 9.00e-08 | 112 |
urinary system structure | 1.80e-07 | 47 |
cardiovascular system | 2.41e-07 | 109 |
compound organ | 2.60e-07 | 68 |