FFCP PHASE1:Hg19::chr16:55527084..55527124,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4313 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=7166 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=33bp_to_uc002eia.3_5end | |||
|cluster_id=chr16:55527084..55527124,+ | |||
|coexpression_cluster_id=C351 | |||
|description=CAGE_peak_5_at_MMP2_5end | |||
|id=chr16:55527084..55527124,+ | |||
|ontology_enrichment_celltype=CL:0000055!6.01e-34!180;CL:0000057!5.50e-20!75;CL:0000680!1.99e-13!57;CL:0000056!1.99e-13!57;CL:0000355!1.99e-13!57;CL:0000192!1.12e-12!42;CL:0000514!1.12e-12!42;CL:0000187!4.49e-12!54;CL:0000183!1.04e-11!59;CL:0000393!2.16e-11!60;CL:0000211!2.16e-11!60;CL:0000359!9.17e-11!32;CL:0000048!1.45e-09!430;CL:0002334!1.98e-09!12;CL:0000723!4.43e-09!436;CL:0002371!2.23e-08!591;CL:0000034!2.63e-08!444;CL:0000222!9.78e-08!119;CL:0002620!1.66e-07!23;CL:0000144!7.63e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0002334;5.30e-13;12!CL:0002539;1.78e-08;10!CL:0000192;4.06e-08;43!CL:0000359;4.25e-08;32!CL:0000134;1.23e-07;55!CL:0000048;1.59e-07;58!CL:0000723;3.03e-07;61!CL:0000499;5.83e-07;28!CL:0000569;9.89e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,1.91e-16,427;CL:0000057,5.32e-16,76;CL:0000723,8.76e-16,433;CL:0000034,6.21e-15,441;CL:0002334,3.55e-13,12;CL:0000192,1.81e-10,43;CL:0000514,1.81e-10,43;CL:0000680,1.96e-10,58;CL:0000056,1.96e-10,58;CL:0000355,1.96e-10,58;CL:0002320,4.50e-09,361;CL:0002539,8.74e-09,10;CL:0000134,9.52e-09,354;CL:0000187,1.03e-08,55;CL:0000136,1.21e-08,15;CL:0000359,2.14e-08,32;CL:0000393,3.15e-07,61;CL:0000211,3.15e-07,61;CL:0000499,4.69e-07,28;CL:0002595,6.93e-07,5;CL:0000219,7.00e-07,386;CL:0000569,7.30e-07,4;CL:0000011,7.30e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000514;4.06e-08;43!CL:0000011;9.89e-07;4 | |||
|ontology_enrichment_disease=DOID:2394!9.17e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;5.45e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.80e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.65e-15!83;UBERON:0002329!3.65e-15!83;UBERON:0003077!3.65e-15!83;UBERON:0003059!3.65e-15!83;UBERON:0007282!3.65e-15!83;UBERON:0009618!3.65e-15!83;UBERON:0007285!3.65e-15!83;UBERON:0004290!1.90e-14!70;UBERON:0002385!2.56e-14!63;UBERON:0001015!2.56e-14!63;UBERON:0000383!2.56e-14!63;UBERON:0000486!3.42e-14!82;UBERON:0001134!6.29e-14!61;UBERON:0002036!6.29e-14!61;UBERON:0003082!6.29e-14!61;UBERON:0001637!1.32e-13!42;UBERON:0003509!1.32e-13!42;UBERON:0004572!1.32e-13!42;UBERON:0004872!4.15e-13!84;UBERON:0001981!1.59e-12!60;UBERON:0007500!1.59e-12!60;UBERON:0004537!1.59e-12!60;UBERON:0006965!1.59e-12!60;UBERON:0002049!2.49e-11!79;UBERON:0007798!2.49e-11!79;UBERON:0004573!2.67e-11!33;UBERON:0004571!2.67e-11!33;UBERON:0000055!6.72e-11!69;UBERON:0005256!1.01e-10!143;UBERON:0004535!6.14e-09!110;UBERON:0002100!7.24e-09!216;UBERON:0000490!1.54e-08!138;UBERON:0002199!2.11e-08!45;UBERON:0002416!2.11e-08!45;UBERON:0003102!3.10e-08!95;UBERON:0001009!3.19e-08!113;UBERON:0000947!4.40e-08!21;UBERON:0010191!4.40e-08!21;UBERON:0001135!1.25e-07!15;UBERON:0003914!2.04e-07!118;UBERON:0001013!5.97e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.87e-12;33!UBERON:0004571;1.87e-12;33!UBERON:0004457;2.45e-10;9!UBERON:0000042;2.45e-10;9!UBERON:0000947;2.76e-10;21!UBERON:0010191;2.76e-10;21!UBERON:0001637;2.92e-09;42!UBERON:0003509;2.92e-09;42!UBERON:0004572;2.92e-09;42!UBERON:0003688;5.96e-09;6!UBERON:0002358;5.96e-09;6!UBERON:0003684;5.96e-09;6!UBERON:0001178;5.96e-09;6!UBERON:0001013;6.77e-09;14!UBERON:0004237;1.78e-08;10!UBERON:0004695;1.78e-08;10!UBERON:0002111;1.78e-08;10!UBERON:0004178;1.78e-08;10!UBERON:0002384;5.25e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,2.05e-13,33;UBERON:0004571,2.05e-13,33;UBERON:0001637,1.89e-12,42;UBERON:0003509,1.89e-12,42;UBERON:0004572,1.89e-12,42;UBERON:0000947,2.95e-10,21;UBERON:0010191,2.95e-10,21;UBERON:0007524,4.36e-10,73;UBERON:0001134,4.56e-10,62;UBERON:0002036,4.56e-10,62;UBERON:0003082,4.56e-10,62;UBERON:0002384,6.45e-10,371;UBERON:0002329,1.18e-09,71;UBERON:0003059,1.18e-09,71;UBERON:0007282,1.18e-09,71;UBERON:0004290,1.18e-09,71;UBERON:0009618,1.18e-09,71;UBERON:0000486,1.44e-09,83;UBERON:0002385,1.64e-09,64;UBERON:0001015,1.64e-09,64;UBERON:0000383,1.64e-09,64;UBERON:0004872,1.80e-09,83;UBERON:0003077,2.08e-09,72;UBERON:0007285,2.08e-09,72;UBERON:0003688,3.83e-09,6;UBERON:0002358,3.83e-09,6;UBERON:0003684,3.83e-09,6;UBERON:0001178,3.83e-09,6;UBERON:0001013,7.79e-09,14;UBERON:0004237,8.74e-09,10;UBERON:0004695,8.74e-09,10;UBERON:0002111,8.74e-09,10;UBERON:0004178,8.74e-09,10;UBERON:0007500,1.72e-08,59;UBERON:0001981,1.72e-08,59;UBERON:0004537,1.72e-08,59;UBERON:0006965,1.72e-08,59;UBERON:0007503,4.54e-08,78;UBERON:0005256,1.00e-07,122;UBERON:0000926,1.54e-07,315;UBERON:0004120,1.54e-07,315;UBERON:0006603,1.54e-07,315;UBERON:0004457,2.09e-07,12;UBERON:0000042,2.09e-07,12;UBERON:0002100,3.62e-07,199;UBERON:0000055,3.71e-07,68;UBERON:0002199,6.35e-07,46;UBERON:0002416,6.35e-07,46;UBERON:0003834,6.93e-07,5;UBERON:0001533,6.93e-07,5 | |||
|phase1_expression=2.54349730978779,5.56661362116556,1.83240725324762,5.00366491765652,5.81049422755474,0.872338524100369,2.53299878168311,2.52687949370732,3.91778442299758,0,0,0,0,0.74259811776028,0.662794751455832,4.03395087871065,4.21886169616784,5.84248072309899,1.95173119516203,0.984968464614303,0.612002073732759,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80719576192283,0.50133791063589,1.01392563272577,2.3858578411533,5.35298357332899,0.189069634328136,0,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0.39752481473341,0,0,1.13061588384802,2.51699661725944,0,0.835979866147242,0.258416759169329,0,0,0.402829317109147,0,0.488124115096339,0,1.62028389576352,0.17859945656816,0,0,1.53316637465883,0,1.28241220751285,0,0,0,1.49091585508596,2.15271869829786,2.51577443545116,11.1866282092037,1.06400514659507,1.12135520028461,2.1349799145941,1.48000529050296,0.311211035399766,0.269421344139376,0.326923806226917,0.605429710579726,1.15235184896,0.468642863667593,0.312160076830321,0,0.597794722207204,0,0.161872944368132,0.280901613404497,0.408308342509787,0.122834317311768,0.309977343527296,20.1960485737949,8.15980866619238,0.910161361938026,1.43723628363248,0.336672227908132,0,0.277064115484183,0.438977620880838,2.45190236639216,4.6573798261045,0.340296549480063,0.717558542755448,0.85422955527427,0.847727604638247,1.20036438433761,1.8549455262919,1.54584324027377,1.67505170698431,2.70042131586026,1.94874010322397,1.51460264546469,1.93304787148829,0.80823028409406,3.19508633264953,0.604512589365842,0.508681776931463,0.193260853163297,0,0,0,0,0.116193942869518,0,0,0,3.12899064659632,4.5026865673502,0,3.25057549622385,1.44375896333917,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381988425558278,0,1.71072446022705,0.308482478109971,0,0.285826432630578,0,0,0.07333828582095,2.84397774667111,0,0,2.39344304926383,0,0.514414748524284,0,0,0.857867961948885,3.7983512377401,0,0.325736184293735,1.42156779497018,0.791951872933429,1.20575750823834,0,0.199945982364114,0,0,0,0,0,2.85273810081437,1.44781306667579,1.64381058040307,1.25342674267927,0,0,0,0,0.508189248444927,0,0.773288812777695,0,0,0,0,0,0.36807447515742,0,0,0.415941723061614,3.7470087647404,0.788512075169673,0.234282829985426,1.20378439891088,11.3703752027992,0,0.664225598535437,0.553107505625109,1.82455590382974,2.74121620447837,1.71571711905428,0,0,0,0,0,0,6.4508030032882,1.84154367945675,7.01650236082684,3.84417447767103,1.53512174720011,3.69964018630297,2.96836132889982,0.616838775210622,4.26148140751505,1.39616165223476,2.59627214591811,1.27831416305955,0,2.20557117333613,0,1.7222167224691,2.1850940160806,2.62248829918848,0,0.0770153371044148,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0.082509499920588,0,0.650060246036521,1.6068392984416,2.61010939388729,0.154048617114644,0,0.137836572484531,0.644521469209642,0.725083469571143,0,0.178064071293475,0.165284915360978,0.384380134730212,0,0,1.85938219718914,4.40737285562896,2.0911118104818,1.84820148105653,0,0.869932992075073,2.59453906745488,0.143124886741991,0,0.949138274156178,0.38126038784765,0.255897791311334,1.28381696410176,0.318203247925937,0,0.539617372749944,1.09814811894422,0.471249609382746,0.808729926293264,0,1.68503382495592,0,1.94970791705028,5.28250733783777,1.22849920267187,3.39373036688911,1.13008116620243,1.65409603063837,1.99031692572366,1.31535265576129,0,1.9676842561399,1.01455188481352,0.92947049429925,0.563391205064483,0,0.589494246078727,0.7133421029625,1.41904425628239,4.85547561184627,7.24448764511784,0,0.349934720244983,0,0,0,0.470719003883896,0,0,2.21715076768338,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63714722689409,0,0,0,0,0,0,0,0,0.445234820091624,0,0,0.796991953004279,0,0.251932747854276,0.409074730008619,0,1.55519793830904,0,0,0,0.690503839458535,0,1.11136990144637,0,0,0,0,0,1.44999915086959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07730361905316,1.82307289355202,0,0.628303510868405,0,0,2.01514705484097,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353830258013357,0,0,0,0,0,0.802577647298789,0,0,0,0,0.394584402849391,0,0,0.821425535170343,0,0,0,0,0,0,0,0.416024019039416,0,0,0,0.698906672968121,0,0,0,0,0.484945082442097,0,0.90392296312213,0,0,0,0,0.240476460754601,0.213452994739353,0.19980960958213,0,0,0,0,0,0,0.135904206073614,0.209205692624666,0.713987523454252,1.15580235960608,0,0,0,1.28929632425987,0,0.837847203816763,0,0,0,0,0,0.134366944973453,1.80149941771202,0,0,0,0,0,0,0,0,0.643012593860077,0.137539436597234,0,0,0,0,0,0.0788057072991982,0.104909176269996,0,0,0,0,0,0,0.542999601753713,0,2.28611152076586,0,0.082092520749339,0.340776043570843,0.113312091520126,0,0,0,0,0,0,0.213574825135389,0.628817220398664,1.24271716604159,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,2.23882204330311,3.73941295755559,1.10961172300523,1.89403005275089,3.77351852628863,4.44905610798268,3.20376095755693,2.57092570397506,2.95330681107283,3.99208904972012,0.63718706865481,2.24901556081802,0.621051827505038,1.65882483136342,2.39257543102195,2.60872530905867,1.35231848097497,1.52322084867518,1.62748293281865,2.72772988803839,0.966695013382396,2.78420255927096,2.78667122089031,0.400027764663154,2.74716564146234,2.35724642136143,0,0.192619830407303,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0.655219697692825,0.245772908753719,0,0,0,0,0,1.84105950251841,0,0.622077260032973,0,0,0.314531883711793,0,0,0,0,0,0.636008701306837,0,0,2.82140754952547,2.4499638188256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601682626794058,1.0085253435176,0,0.785720083444267,0,0,0,0,0,0,0.546974809018219,0,1.98484471355718,0,0,0,0,0,0,0.177404740325278,0,2.91529616043611,0,0,0,0,0.470958557103084,0,0,0,0,0,0.214429632529969,0,0.116241425368125,0.173858272302579,1.60342272946051,0,0,0,0,0.118332000730565,0,1.27016115057279,0,0.93061915699296,0.955538938977433,0,0,0,0,0.513314034281235,1.1598144313382,1.45713297917742,0,0,0,0,0,0.150962843566674,0.231522474323834,0.218559560503957,0,0.490296643507811,0,0,0,0.4226557275834,1.18948980281472,0,0.0644578879735772,0,0,0,0,0.730336388246517,0,0,0.315543124386369,0,0,0.5290268405154,8.55588541783528,4.62175628631418,2.59575937274273,0,0,0,0.101988829741982,0,0,0,1.36401656792831,0.267964130156178,0,0,0.426467963801962,0.23806443146374,0,0.124149428591716,0.112131862580613,0.12729431655633,0.202117188958219,1.08858373948481,0,0.134704106029175,0.143444410785353,1.33064142618405,0,0,0,0,0,0.611207220914332,0.813792356631477,0.665756774185513,0.805095174364105,0 | |||
|short_description=p5@MMP2 | |||
}} |
Latest revision as of 00:08, 17 September 2015
Short description: | p5@MMP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_MMP2_5end |
Coexpression cluster: | C351_Fibroblast_Smooth_mesenchymal_Adipocyte_tenocyte_Synoviocyte_Hair |
Association with transcript: | 33bp_to_uc002eia.3_5end |
EntrezGene: | MMP2 |
HGNC: | 7166 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 1.91e-16 | 427 |
fibroblast | 5.32e-16 | 76 |
somatic stem cell | 8.76e-16 | 433 |
stem cell | 6.21e-15 | 441 |
preadipocyte | 3.55e-13 | 12 |
smooth muscle cell | 1.81e-10 | 43 |
smooth muscle myoblast | 1.81e-10 | 43 |
muscle precursor cell | 1.96e-10 | 58 |
myoblast | 1.96e-10 | 58 |
multi-potent skeletal muscle stem cell | 1.96e-10 | 58 |
connective tissue cell | 4.50e-09 | 361 |
aortic smooth muscle cell | 8.74e-09 | 10 |
mesenchymal cell | 9.52e-09 | 354 |
muscle cell | 1.03e-08 | 55 |
fat cell | 1.21e-08 | 15 |
vascular associated smooth muscle cell | 2.14e-08 | 32 |
electrically responsive cell | 3.15e-07 | 61 |
electrically active cell | 3.15e-07 | 61 |
stromal cell | 4.69e-07 | 28 |
smooth muscle cell of the subclavian artery | 6.93e-07 | 5 |
motile cell | 7.00e-07 | 386 |
cardiac mesenchymal cell | 7.30e-07 | 4 |
migratory trunk neural crest cell | 7.30e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.80e-08 | 14 |