FFCP PHASE1:Hg19::chr16:2723378..2723446,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=100507321 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=27548 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_NR_040023,uc002crb.2,uc010bsr.1,uc010bss.1_5end | |||
|cluster_id=chr16:2723378..2723446,- | |||
|coexpression_cluster_id=C3334 | |||
|description=CAGE_peak_1_at_ERVK13-1_5end | |||
|id=chr16:2723378..2723446,- | |||
|ontology_enrichment_celltype=CL:0000738!4.09e-13!140;CL:0000037!1.30e-12!172;CL:0000566!1.30e-12!172;CL:0000988!2.06e-11!182;CL:0002031!2.49e-11!124;CL:0002032!3.22e-11!165;CL:0000837!3.22e-11!165;CL:0002087!1.98e-09!119;CL:0000791!3.88e-07!18;CL:0000789!3.88e-07!18;CL:0002420!3.88e-07!18;CL:0002419!3.88e-07!18;CL:0000790!3.88e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.65e-07;18!CL:0000789;2.65e-07;18!CL:0002419;2.65e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.33e-13,136;CL:0000037,1.20e-12,168;CL:0000988,7.30e-12,177;CL:0002031,2.07e-11,120;CL:0002032,3.03e-11,161;CL:0000837,3.03e-11,161;CL:0002087,1.74e-09,115;CL:0000791,3.87e-07,18;CL:0000789,3.87e-07,18;CL:0002420,3.87e-07,18;CL:0002419,3.87e-07,18;CL:0000790,3.87e-07,18 | |||
|ontology_enrichment_development_v019=UBERON:0006601;5.44e-08;82!CL:0000790;2.65e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.30e-37!115;UBERON:0001049!1.04e-23!57;UBERON:0005068!1.04e-23!57;UBERON:0006241!1.04e-23!57;UBERON:0007135!1.04e-23!57;UBERON:0003080!6.68e-20!42;UBERON:0002780!1.04e-19!41;UBERON:0001890!1.04e-19!41;UBERON:0006240!1.04e-19!41;UBERON:0002616!1.57e-19!59;UBERON:0000955!5.41e-19!69;UBERON:0006238!5.41e-19!69;UBERON:0001017!5.38e-17!82;UBERON:0001893!4.78e-16!34;UBERON:0002020!4.83e-16!34;UBERON:0003528!4.83e-16!34;UBERON:0002791!1.07e-15!33;UBERON:0000073!1.15e-15!94;UBERON:0001016!1.15e-15!94;UBERON:0005743!1.95e-15!86;UBERON:0001869!3.09e-15!32;UBERON:0002619!1.38e-12!22;UBERON:0000956!9.06e-12!25;UBERON:0000203!9.06e-12!25;UBERON:0001950!2.27e-11!20;UBERON:0003075!3.08e-11!86;UBERON:0007284!3.08e-11!86;UBERON:0002346!4.18e-11!90;UBERON:0003056!2.37e-08!61;UBERON:0002390!7.08e-08!102;UBERON:0003061!7.08e-08!102;UBERON:0000153!2.97e-07!129;UBERON:0007811!2.97e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.19e-14;41!UBERON:0001890;1.19e-14;41!UBERON:0003528;6.23e-14;34!UBERON:0002020;6.23e-14;34!UBERON:0001869;7.68e-14;32!UBERON:0002791;9.14e-14;32!UBERON:0001893;9.35e-14;34!UBERON:0000073;2.29e-13;53!UBERON:0002616;2.29e-13;53!UBERON:0002619;1.31e-12;22!UBERON:0000956;8.95e-12;25!UBERON:0000203;8.95e-12;25!UBERON:0001950;2.18e-11;20!UBERON:0007023;1.16e-10;114!UBERON:0000955;1.56e-09;68!UBERON:0001017;1.87e-08;75!UBERON:0001016;3.24e-08;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.23e-36,114;UBERON:0001049,1.70e-23,56;UBERON:0005068,1.70e-23,56;UBERON:0006241,1.70e-23,56;UBERON:0007135,1.70e-23,56;UBERON:0000073,2.87e-22,53;UBERON:0002616,2.87e-22,53;UBERON:0002780,1.04e-19,41;UBERON:0001890,1.04e-19,41;UBERON:0003080,1.04e-19,41;UBERON:0006240,1.04e-19,41;UBERON:0000955,9.29e-19,68;UBERON:0006238,9.29e-19,68;UBERON:0001016,6.81e-17,89;UBERON:0001017,9.26e-17,81;UBERON:0001893,4.77e-16,34;UBERON:0003528,4.82e-16,34;UBERON:0002020,4.82e-16,34;UBERON:0001869,3.08e-15,32;UBERON:0002791,3.63e-15,32;UBERON:0002619,1.38e-12,22;UBERON:0003075,3.18e-12,82;UBERON:0007284,3.18e-12,82;UBERON:0002346,4.76e-12,86;UBERON:0000956,9.05e-12,25;UBERON:0000203,9.05e-12,25;UBERON:0001950,2.27e-11,20;UBERON:0003056,1.49e-08,61;UBERON:0002390,6.25e-08,98;UBERON:0003061,6.25e-08,98;UBERON:0010371,8.04e-07,104 | |||
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| |||
|short_description=p1@ERVK13-1 | |||
}} |
Latest revision as of 21:11, 15 September 2015
Short description: | p1@ERVK13-1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ERVK13-1_5end |
Coexpression cluster: | C3334_cerebellum_pineal_occipital_Dendritic_parietal_medial_pituitary |
Association with transcript: | 0bp_to_NR_040023, uc002crb.2, uc010bsr.1, uc010bss.1_5end |
EntrezGene: | ERVK13-1 |
HGNC: | 27548 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 3.33e-13 | 136 |
hematopoietic stem cell | 1.20e-12 | 168 |
hematopoietic cell | 7.30e-12 | 177 |
hematopoietic lineage restricted progenitor cell | 2.07e-11 | 120 |
hematopoietic oligopotent progenitor cell | 3.03e-11 | 161 |
hematopoietic multipotent progenitor cell | 3.03e-11 | 161 |
nongranular leukocyte | 1.74e-09 | 115 |
mature alpha-beta T cell | 3.87e-07 | 18 |
alpha-beta T cell | 3.87e-07 | 18 |
immature T cell | 3.87e-07 | 18 |
mature T cell | 3.87e-07 | 18 |
immature alpha-beta T cell | 3.87e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.23e-36 | 114 |
neural tube | 1.70e-23 | 56 |
neural rod | 1.70e-23 | 56 |
future spinal cord | 1.70e-23 | 56 |
neural keel | 1.70e-23 | 56 |
regional part of nervous system | 2.87e-22 | 53 |
regional part of brain | 2.87e-22 | 53 |
regional part of forebrain | 1.04e-19 | 41 |
forebrain | 1.04e-19 | 41 |
anterior neural tube | 1.04e-19 | 41 |
future forebrain | 1.04e-19 | 41 |
brain | 9.29e-19 | 68 |
future brain | 9.29e-19 | 68 |
nervous system | 6.81e-17 | 89 |
central nervous system | 9.26e-17 | 81 |
telencephalon | 4.77e-16 | 34 |
brain grey matter | 4.82e-16 | 34 |
gray matter | 4.82e-16 | 34 |
cerebral hemisphere | 3.08e-15 | 32 |
regional part of telencephalon | 3.63e-15 | 32 |
regional part of cerebral cortex | 1.38e-12 | 22 |
neural plate | 3.18e-12 | 82 |
presumptive neural plate | 3.18e-12 | 82 |
neurectoderm | 4.76e-12 | 86 |
cerebral cortex | 9.05e-12 | 25 |
pallium | 9.05e-12 | 25 |
neocortex | 2.27e-11 | 20 |
pre-chordal neural plate | 1.49e-08 | 61 |
hematopoietic system | 6.25e-08 | 98 |
blood island | 6.25e-08 | 98 |
ecto-epithelium | 8.04e-07 | 104 |