FFCP PHASE1:Hg19::chr16:2653434..2653457,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=652276 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=49bp_to_NR_015441,uc002cqx.2,uc002cqy.3_5end | |||
|cluster_id=chr16:2653434..2653457,+ | |||
|description=CAGE_peak_1_at_LOC652276_5end | |||
|id=chr16:2653434..2653457,+ | |||
|ontology_enrichment_celltype=CL:0000557!5.23e-11!71;CL:0002009!7.83e-09!65;CL:0000839!2.08e-08!70;CL:0000860!3.93e-08!45;CL:0002194!5.32e-08!63;CL:0000576!5.32e-08!63;CL:0000040!5.32e-08!63;CL:0000559!5.32e-08!63;CL:0002057!3.10e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.61e-11;33!CL:0002057;7.61e-11;33!CL:0000473;1.11e-09;39!CL:0000234;1.11e-09;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,1.68e-10,67;CL:0002009,2.47e-08,61;CL:0000839,6.11e-08,66;CL:0000473,8.30e-08,48;CL:0000234,8.30e-08,48;CL:0002194,1.66e-07,59;CL:0000576,1.66e-07,59;CL:0000040,1.66e-07,59;CL:0000559,1.66e-07,59;CL:0000860,3.08e-07,42;CL:0002057,3.08e-07,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.53e-12!57;UBERON:0005068!1.53e-12!57;UBERON:0006241!1.53e-12!57;UBERON:0007135!1.53e-12!57;UBERON:0002780!5.00e-11!41;UBERON:0001890!5.00e-11!41;UBERON:0006240!5.00e-11!41;UBERON:0003080!6.26e-11!42;UBERON:0000062!1.28e-10!511;UBERON:0002616!1.43e-10!59;UBERON:0001474!1.85e-10!86;UBERON:0003075!1.36e-09!86;UBERON:0007284!1.36e-09!86;UBERON:0002371!1.44e-09!80;UBERON:0002619!2.35e-09!22;UBERON:0000955!3.95e-09!69;UBERON:0006238!3.95e-09!69;UBERON:0003056!8.25e-09!61;UBERON:0000073!9.50e-09!94;UBERON:0001016!9.50e-09!94;UBERON:0002346!1.04e-08!90;UBERON:0001893!1.13e-08!34;UBERON:0002791!1.77e-08!33;UBERON:0001017!2.36e-08!82;UBERON:0001950!2.94e-08!20;UBERON:0002020!3.22e-08!34;UBERON:0003528!3.22e-08!34;UBERON:0005743!6.12e-08!86;UBERON:0001869!6.19e-08!32;UBERON:0000956!6.29e-08!25;UBERON:0000203!6.29e-08!25;UBERON:0000480!1.81e-07!626;UBERON:0004765!1.96e-07!101;UBERON:0001434!1.96e-07!101;UBERON:0000467!2.37e-07!625;UBERON:0000922!3.06e-07!612;UBERON:0000468!3.09e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.16e-09;22!UBERON:0002780;5.54e-09;41!UBERON:0001890;5.54e-09;41!UBERON:0001950;1.45e-08;20!UBERON:0000956;2.67e-08;25!UBERON:0000203;2.67e-08;25!UBERON:0000073;4.29e-08;53!UBERON:0002616;4.29e-08;53!UBERON:0001893;8.25e-08;34!UBERON:0001869;9.38e-08;32!UBERON:0002791;9.97e-08;32!UBERON:0003528;1.30e-07;34!UBERON:0002020;1.30e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.28e-12,56;UBERON:0005068,1.28e-12,56;UBERON:0006241,1.28e-12,56;UBERON:0007135,1.28e-12,56;UBERON:0000073,3.74e-12,53;UBERON:0002616,3.74e-12,53;UBERON:0002780,4.93e-11,41;UBERON:0001890,4.93e-11,41;UBERON:0003080,4.93e-11,41;UBERON:0006240,4.93e-11,41;UBERON:0001474,6.03e-10,82;UBERON:0010371,6.16e-10,104;UBERON:0003075,1.15e-09,82;UBERON:0007284,1.15e-09,82;UBERON:0002619,2.32e-09,22;UBERON:0001016,3.35e-09,89;UBERON:0000955,3.74e-09,68;UBERON:0006238,3.74e-09,68;UBERON:0003056,4.55e-09,61;UBERON:0002371,4.62e-09,76;UBERON:0002346,9.51e-09,86;UBERON:0001893,1.12e-08,34;UBERON:0001017,2.17e-08,81;UBERON:0001950,2.92e-08,20;UBERON:0003528,3.19e-08,34;UBERON:0002020,3.19e-08,34;UBERON:0002791,4.60e-08,32;UBERON:0001869,6.14e-08,32;UBERON:0000956,6.24e-08,25;UBERON:0000203,6.24e-08,25;UBERON:0004765,2.14e-07,90 | |||
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| |||
|short_description=p1@LOC652276 | |||
}} |
Latest revision as of 20:53, 15 September 2015
Short description: | p1@LOC652276 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LOC652276_5end |
Coexpression cluster: | NA |
Association with transcript: | 49bp_to_NR_015441, uc002cqx.2, uc002cqy.3_5end |
EntrezGene: | LOC652276 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 1.68e-10 | 67 |
macrophage dendritic cell progenitor | 2.47e-08 | 61 |
myeloid lineage restricted progenitor cell | 6.11e-08 | 66 |
defensive cell | 8.30e-08 | 48 |
phagocyte | 8.30e-08 | 48 |
monopoietic cell | 1.66e-07 | 59 |
monocyte | 1.66e-07 | 59 |
monoblast | 1.66e-07 | 59 |
promonocyte | 1.66e-07 | 59 |
classical monocyte | 3.08e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.08e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
neural tube | 1.28e-12 | 56 |
neural rod | 1.28e-12 | 56 |
future spinal cord | 1.28e-12 | 56 |
neural keel | 1.28e-12 | 56 |
regional part of nervous system | 3.74e-12 | 53 |
regional part of brain | 3.74e-12 | 53 |
regional part of forebrain | 4.93e-11 | 41 |
forebrain | 4.93e-11 | 41 |
anterior neural tube | 4.93e-11 | 41 |
future forebrain | 4.93e-11 | 41 |
bone element | 6.03e-10 | 82 |
ecto-epithelium | 6.16e-10 | 104 |
neural plate | 1.15e-09 | 82 |
presumptive neural plate | 1.15e-09 | 82 |
regional part of cerebral cortex | 2.32e-09 | 22 |
nervous system | 3.35e-09 | 89 |
brain | 3.74e-09 | 68 |
future brain | 3.74e-09 | 68 |
pre-chordal neural plate | 4.55e-09 | 61 |
bone marrow | 4.62e-09 | 76 |
neurectoderm | 9.51e-09 | 86 |
telencephalon | 1.12e-08 | 34 |
central nervous system | 2.17e-08 | 81 |
neocortex | 2.92e-08 | 20 |
brain grey matter | 3.19e-08 | 34 |
gray matter | 3.19e-08 | 34 |
regional part of telencephalon | 4.60e-08 | 32 |
cerebral hemisphere | 6.14e-08 | 32 |
cerebral cortex | 6.24e-08 | 25 |
pallium | 6.24e-08 | 25 |
skeletal element | 2.14e-07 | 90 |