FFCP PHASE1:Hg19::chr15:66994561..66994597,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4091 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6772 | |||
|TSSclassifier=strong | |||
|UniProt=O43541 | |||
|association_with_transcript=-72bp_to_ENST00000288840_5end | |||
|cluster_id=chr15:66994561..66994597,+ | |||
|coexpression_cluster_id=C3505 | |||
|description=CAGE_peak_2_at_SMAD6_5end | |||
|id=chr15:66994561..66994597,+ | |||
|ontology_enrichment_celltype=CL:0000055!6.83e-10!180;CL:0002078!9.05e-08!44;CL:0000213!3.29e-07!57;CL:0000215!3.29e-07!57;CL:0000057!4.19e-07!75;CL:0000222!4.62e-07!119 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002078,5.34e-08,45;CL:0000136,4.67e-07,15;CL:0000213,5.05e-07,58;CL:0000215,5.05e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!1.66e-15!118;UBERON:0000477!2.07e-14!286;UBERON:0000025!7.33e-12!194;UBERON:0000481!1.40e-11!347;UBERON:0000468!1.67e-11!659;UBERON:0004111!1.08e-10!241;UBERON:0000475!7.14e-10!365;UBERON:0002417!1.16e-09!61;UBERON:0000916!1.16e-09!61;UBERON:0000119!3.31e-09!312;UBERON:0000483!3.57e-09!309;UBERON:0003103!5.30e-09!69;UBERON:0004872!5.40e-09!84;UBERON:0009569!5.59e-09!113;UBERON:0002100!1.85e-08!216;UBERON:0000467!3.75e-08!625;UBERON:0000480!4.90e-08!626;UBERON:0005172!8.72e-08!55;UBERON:0005173!8.72e-08!55;UBERON:0000062!2.39e-07!511;UBERON:0003104!2.61e-07!238;UBERON:0009142!2.61e-07!238;UBERON:0002049!7.15e-07!79;UBERON:0007798!7.15e-07!79;UBERON:0007100!7.22e-07!27 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,4.10e-14,117;UBERON:0000025,3.54e-10,192;UBERON:0002417,2.01e-09,60;UBERON:0000916,2.01e-09,60;UBERON:0003103,6.16e-09,68;UBERON:0004111,7.62e-09,240;UBERON:0009569,1.29e-08,112;UBERON:0004872,3.57e-08,83;UBERON:0000483,8.20e-08,306;UBERON:0000119,9.96e-08,309;UBERON:0005172,1.86e-07,54;UBERON:0005173,1.86e-07,54;UBERON:0002100,2.02e-07,199;UBERON:0007100,6.02e-07,27;UBERON:0003104,7.23e-07,160;UBERON:0009142,7.23e-07,160 | |||
|phase1_expression=5.81370813665781,7.92171938396638,5.63817616383885,6.00439790118782,4.91657203870017,6.97870819280295,2.53299878168311,7.58063848112197,2.87304191019822,1.96587149201207,9.07141518364156,0.873765488520689,0.791300934685361,3.09415882400117,2.31978163009541,0,0.602694528023977,1.46062018077475,0.487932798790507,3.20114750999649,6.12002073732759,4.70182082217132,1.71741592278634,3.42186062682211,3.51519390865448,0,0,0,0,0,0.619264493264304,0,0,0,0,0.284338464974843,0,0,0.200544447470142,0.651032612147555,0.223915474239924,0.32389366601898,0.257575567634187,1.30858414901608,1.51150377475524,3.63876091781724,0,0.411167888021826,0.309706370895104,0.28769239232215,0.512321413058201,0.47296445977717,0.344745680736619,0,1.35426486594342,0.941211697713023,0.545812300115692,0.674170453335254,0.612167784741805,0.641858054152187,0,0.989553900560148,0.598390972864896,1.27867425159808,0,0,0.622822248995575,0.502497330513487,0.521482918420201,0.217188844705117,0.605399502633369,0,0.316462387440884,0,0,0.419317291016752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,1.12101712596307,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0.579606171470105,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,63.38978524163,4.02420515822182,15.3435074212236,16.62620100969,23.5628817998868,16.8021961994556,4.7717156823066,7.78615792484217,4.63220604103932,7.09534071880205,6.0606002128257,5.82856885964821,0,0,0.649094787309367,1.0447784237956,0.531831842075461,0,0,0,3.9752481473341,3.4409383804245,3.12426451446835,10.7408508965562,10.9069853414576,4.12677062910101,5.8518590630307,2.06733407335463,2.13459757612026,1.33888245105868,1.61131726843659,3.80136052859256,0.24406205754817,1.47065232138347,7.29127753093584,2.50039239195423,5.38870494302808,4.39184773884957,4.5994991239765,0.949265659568129,3.84723662253855,0,0,0,1.49091585508596,3.54565432660823,0.662045904066094,3.44203944898576,2.83734705758686,6.16745360156538,6.4049397437823,3.94668077467456,8.40269795579369,4.58016285036939,9.48079038058061,1.96764655938411,5.18558332031999,0.234321431833797,0.624320153660641,0.570471821544449,0.597794722207204,0.352303495931295,0.647491777472526,0.280901613404497,1.02077085627447,1.22834317311768,2.58314452939414,2.37600571456411,3.4617370098998,0,0.718618141816238,1.17835279767846,1.12606667884768,0.554128230968366,3.95079858792754,2.75839016219118,6.15976041517047,5.55817697484103,5.74046834204358,1.49490172172997,1.69545520927649,5.70173082560364,3.7098910525838,3.86460810068444,3.90845398296339,5.90717162844432,4.87185025805993,3.02920529092937,2.57739716198438,11.4768700341356,4.9701342952326,2.61955455391865,6.95198428472999,0,0.272746120590835,0,1.21973706129595,0.927708378250397,2.5562667431294,1.34759371519982,2.01856680700503,0.72995471815166,1.56449532329816,2.57296375277154,0,1.39310378409594,2.16563844500876,4.49565840151407,7.58631105351458,4.57920956778616,6.72793233667603,7.1900216550494,4.50814176311084,2.96628877952362,4.51309369788296,3.8474715694639,2.95262181849859,8.41450642820675,5.7620361586396,7.3504355692771,6.33775174109154,2.94848165003288,6.49868897349544,0,1.47586126251736,4.80389868835872,0,0,0,0.185176890317059,0,1.03993478527958,4.3299402607582,3.4779121492523,1.76113041353732,5.05282567163758,1.85194205030644,2.47330397904978,1.58040879591855,0.858486162094873,0.738651018262192,2.34004265139238,0.891786973732369,0,0,0.141775097242386,0.0895585227028483,0,0.383382679165211,0,0,0.207328115540772,0,0.12624243342638,0.825472625798197,0,0,6.84289784090821,1.64523988325318,0,0.571652865261156,0.897048674762886,2.61576041299968,1.24675085895615,0.517086863031111,7.15312891703765,0,1.06375246633948,1.04007436911366,1.02882949704857,0,3.99633268524149,4.57529579706072,5.96883765930587,2.46972101034231,0,2.84313558994037,2.37585561880029,0.301439377059586,0,2.69927076191554,0,0.502257091432126,0,2.39624855491583,2.29723871668228,1.42636905040718,3.04040744001916,2.87666851570537,1.07436577943937,0.336255431980582,0,0,0,0.254094624222463,0,1.54657762555539,0.502548796003046,0.637938751653163,0,0,0,4.41689370188904,1.00034104211935,1.62759014219841,2.49565033836969,2.3195768543631,2.05013139544115,2.92853537481783,1.80567659836631,6.82222512167955,4.1389228517002,1.99267679560631,2.76553752812555,2.25897397617015,2.15381273209015,3.0882908142977,0,0.215714200818617,0,0.909382714338778,0,3.62868351995616,3.2254015016441,5.37116906508219,4.49056151092918,5.76626171650654,3.58195074346692,4.66476371316462,2.96836132889982,0.308419387605311,2.66342587969691,2.87445046048332,0.519254429183621,2.20799719073923,1.45031339509947,0,0,2.64073230778596,1.0925470080403,3.01586154406675,1.80479845162965,2.6185214615501,6.27479815341484,2.92278449306521,2.84989398010764,5.68666920354483,5.10281115829547,3.45465465763423,10.7959076883203,5.41892875087706,5.51858751240339,0.509752546090077,3.3243040357149,2.68649705666614,0.438519753291869,1.0457418040996,9.23220450419001,22.9610251989794,7.48370307727897,8.655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| |||
|short_description=p2@SMAD6 | |||
}} |
Latest revision as of 16:38, 18 September 2015
Short description: | p2@SMAD6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SMAD6_5end |
Coexpression cluster: | C3505_Cardiac_Retinal_lung_Chondrocyte_Synoviocyte_tenocyte_seminal |
Association with transcript: | -72bp_to_ENST00000288840_5end |
EntrezGene: | SMAD6 |
HGNC: | 6772 |
UniProt: | O43541 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
meso-epithelial cell | 5.34e-08 | 45 |
fat cell | 4.67e-07 | 15 |
lining cell | 5.05e-07 | 58 |
barrier cell | 5.05e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 4.10e-14 | 117 |
tube | 3.54e-10 | 192 |
abdominal segment of trunk | 2.01e-09 | 60 |
abdomen | 2.01e-09 | 60 |
compound organ | 6.16e-09 | 68 |
anatomical conduit | 7.62e-09 | 240 |
subdivision of trunk | 1.29e-08 | 112 |
splanchnic layer of lateral plate mesoderm | 3.57e-08 | 83 |
epithelium | 8.20e-08 | 306 |
cell layer | 9.96e-08 | 309 |
abdomen element | 1.86e-07 | 54 |
abdominal segment element | 1.86e-07 | 54 |
trunk | 2.02e-07 | 199 |
primary circulatory organ | 6.02e-07 | 27 |
mesenchyme | 7.23e-07 | 160 |
entire embryonic mesenchyme | 7.23e-07 | 160 |