FFCP PHASE1:Hg19::chr13:37494342..37494348,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4093 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6774 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=26bp_to_ENST00000350148_5end | |||
|cluster_id=chr13:37494342..37494348,- | |||
|description=CAGE_peak_7_at_SMAD9_5end | |||
|id=chr13:37494342..37494348,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000214;6.90e-11;3!CL:0000222;8.65e-09;1!CL:0000153;5.44e-08;9!CL:0000447;5.44e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000214,1.14e-10,3;CL:0000153,5.53e-08,9;CL:0000447,5.53e-08,9 | |||
|ontology_enrichment_development_v019=UBERON:0000358;3.05e-09;1!UBERON:0006242;8.65e-09;1!UBERON:0010115;8.65e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;3.09e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,2.26e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.63e-20!115;UBERON:0000073!5.75e-12!94;UBERON:0001016!5.75e-12!94;UBERON:0002346!2.86e-11!90;UBERON:0001049!4.37e-10!57;UBERON:0005068!4.37e-10!57;UBERON:0006241!4.37e-10!57;UBERON:0007135!4.37e-10!57;UBERON:0003075!7.56e-10!86;UBERON:0007284!7.56e-10!86;UBERON:0005743!1.36e-09!86;UBERON:0001017!2.79e-09!82;UBERON:0000955!1.46e-08!69;UBERON:0006238!1.46e-08!69;UBERON:0002780!8.56e-08!41;UBERON:0001890!8.56e-08!41;UBERON:0006240!8.56e-08!41;UBERON:0000924!8.79e-08!173;UBERON:0006601!8.79e-08!173;UBERON:0000468!9.87e-08!659;UBERON:0003080!1.98e-07!42;UBERON:0002616!3.77e-07!59;UBERON:0004111!8.04e-07!241;UBERON:0004121!8.44e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0002346;2.47e-17;4!UBERON:0000923;2.47e-17;4!UBERON:0010316;2.47e-17;4!UBERON:0005291;2.47e-17;4!UBERON:0002050;5.54e-14;5!UBERON:0005423;5.54e-14;5!UBERON:0006915;6.90e-11;3!UBERON:0007616;6.90e-11;3!UBERON:0002217;6.90e-11;3!UBERON:0002018;6.90e-11;3!UBERON:0002363;8.65e-09;1!UBERON:0002038;8.65e-09;1!UBERON:0009661;8.65e-09;1!UBERON:0002950;8.65e-09;1!UBERON:0001891;8.65e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006915,1.14e-10,3;UBERON:0007616,1.14e-10,3;UBERON:0002217,1.14e-10,3;UBERON:0002018,1.14e-10,3;UBERON:0002038,8.36e-09,1;UBERON:0009661,8.36e-09,1;UBERON:0002950,8.36e-09,1;UBERON:0001891,8.36e-09,1;UBERON:0009616,8.36e-09,1;UBERON:0010286,8.36e-09,1;UBERON:0002363,1.13e-08,1;UBERON:0007645,1.13e-08,1;UBERON:0007647,1.13e-08,1;UBERON:0010115,1.13e-08,1 | |||
|phase1_expression=0.726713517082227,0.428201047781966,0.422863212287913,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0.286235987131057,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0.50133791063589,1.59331170856906,0,0.486634870302636,0.0945348171640679,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0.550236083880135,0,0.258416759169329,0,0,0,0.760272105718513,0.24406205754817,0,0,0.17859945656816,0.22452937262617,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0.25326102332916,0,0,1.06400514659507,0,0,0,0.622422070799533,0,0.163461903113459,0,0,0,0,0,0.149448680551801,0,0,0.140450806702248,0,0.122834317311768,0.103325781175765,0,0.247266929278557,0,0.718618141816238,0,0,0,0,0.612975591598039,0,0,0,0.213557388818567,0.211931901159562,0,0,0,0.18611685633159,0.337552664482532,0.0974370051611986,0.252433774244115,0.184099797284599,0,0,0.201504196455281,0.169560592310488,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0.185176890317059,0,0,0,0.115930404975077,0.117408694235822,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.176096868026452,0,0,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0.1466765716419,0,0,0,0,0,0,0,0.799266537048298,1.00084595560703,0,0,0,0.710783897485092,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0,0,0,0,1.52456774533478,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0.157702415033935,0,0.300946099727719,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0.561320188866147,0.256278298511402,0,0,0,0.154209693802656,0.177561725313127,0.0821271560138091,0,0.232420756919918,0,0.200506470303285,0.276242966807689,0.114814448164607,0.182091168006717,0.262248829918848,0,0,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0.501689773854853,0,0,0,0,0,0.256450125116389,0,0,0.412164046590889,0.366277859273374,0.330037999682352,0,0,0,0,0,0.15350367472613,0,0.107420244868274,0.145016693914229,0.170453254832202,0.178064071293475,0,0,0,0.2023155617111,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0.359744915166629,0.274537029736055,0,0,0,0,0,0.243713489631284,0,0,0.141405431953713,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,1.05553817648832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0.121360521749513,0,0,0,0,0,0,0.562677665642051,0.222617410045812,0,0.211125408127993,0.996239941255349,0.828851746593443,0.755798243562828,0.20453736500431,0,0.311039587661807,0,0,0,0.690503839458535,0,0,0,0.649376687132959,0,0,0,0,0.1137934482855,0,0,0,0,0.520874984799877,0,0.482385754501632,0,0.884634079449797,0,0.219385397153973,0.10893846351899,0.139423744278603,0.230850775511391,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.442287822516696,1.83309043480088,0,0,0.104421949505455,0.808813595768125,0,0.468528891450678,0,0,0,0.394584402849391,0,0.30607276163049,1.0741718536843,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0.171986032471617,0,0,0,0.775912131907355,0.0882561266915003,0.90392296312213,0,0,0.189932387867636,0,0,1.06726497369676,0.19980960958213,0,0.343609788497747,0,0,0.124252535565433,0,0.271808412147228,0.209205692624666,0.305994652908965,0,0,0.273810757783986,0,0.859530882839914,0,0.558564802544508,0.916641696046735,0.717873024576814,0,0.429226048136571,0.446342914883745,0.739018197353989,0.720599767084807,1.16495949527454,0.945398187686684,0.329663433524666,0.202210631562555,0,0,0,1.0896272488926,0,0,0,0,0,0.182248669974074,0,0.315222829196793,0.577000469484979,0,0,0,0,0,0,0,0,0.653174720218818,0,0,0,0,0,0,0.517131825446202,1.05786081394152,0,0,0.213574825135389,0.314408610199332,0.414239055347196,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0.876336514945499,0,0.998361463831671,1.05563885000352,1.10678907948985,0,0.303298235083296,0,0,0.468334905806882,0.869526171664951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26184898228651,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0.337884881306145,0,0.345430341731199,0.607719912354764,0.691292180758654,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0.639471856518258,0.539124056983409,0.314531883711793,0.54604819096007,0,1.2754495206101,1.23935764259002,0.558644917973244,0.636008701306837,0,0,0,1.2249819094128,0.128458450192919,0,0.957803154342908,0,0,0.276629009856872,0.807378228159255,0,0,0,0,0,0.381382095467167,0,0,0.300841313397029,0.20170506870352,0,0,0,0,0.337687923091973,0,0.206686796501184,0.0634158101939068,0,0,0.496211178389294,1.23109871051734,0,0.535701835878287,0.672567444437648,0,0.455324382702595,0.0887023701626388,0,0,0.543757863814654,0.263091094251396,0,0.111231401892069,0.627944742804112,0.314231179832004,0,0,0.215927591218621,0.47775168788705,1.00067161847319,0.1580136117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| |||
|short_description=p7@SMAD9 | |||
}} |
Latest revision as of 06:21, 17 September 2015
Short description: | p7@SMAD9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SMAD9_5end |
Coexpression cluster: | NA |
Association with transcript: | 26bp_to_ENST00000350148_5end |
EntrezGene: | SMAD9 |
HGNC: | 6774 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
synovial cell | 1.14e-10 | 3 |
GAG secreting cell | 5.53e-08 | 9 |
carbohydrate secreting cell | 5.53e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelium | 1.14e-10 | 3 |
layer of synovial tissue | 1.14e-10 | 3 |
synovial joint | 1.14e-10 | 3 |
synovial membrane of synovial joint | 1.14e-10 | 3 |
substantia nigra | 8.36e-09 | 1 |
midbrain nucleus | 8.36e-09 | 1 |
regional part of midbrain | 8.36e-09 | 1 |
midbrain | 8.36e-09 | 1 |
presumptive midbrain | 8.36e-09 | 1 |
midbrain neural tube | 8.36e-09 | 1 |
dura mater | 1.13e-08 | 1 |
future meninx | 1.13e-08 | 1 |
ectomeninx | 1.13e-08 | 1 |
future dura mater | 1.13e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 2.26e-07 | 10 |