FFCP PHASE1:Hg19::chr12:49208498..49208510,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr12:49208498..49208510,- | |||
|description=CAGE_peak_at_chr12:49208498..49208510,- | |||
|id=chr12:49208498..49208510,- | |||
|ontology_enrichment_celltype=CL:0000055!2.43e-15!180;CL:0000057!1.74e-12!75;CL:0000183!6.28e-11!59;CL:0000680!1.06e-09!57;CL:0000056!1.06e-09!57;CL:0000355!1.06e-09!57;CL:0000187!1.55e-09!54;CL:0000192!5.06e-09!42;CL:0000514!5.06e-09!42;CL:0002620!6.14e-09!23;CL:0000393!3.12e-07!60;CL:0000211!3.12e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0000317;1.59e-10;2!CL:1000448;1.59e-10;2!CL:0002308;1.59e-10;2!CL:0002140;1.59e-10;2!CL:0002600;1.59e-10;2!CL:0002567;2.73e-07;3!CL:0000594;2.73e-07;3!CL:0000393;2.82e-07;61!CL:0000211;2.82e-07;61!CL:0000187;4.32e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,3.02e-11,58;CL:0000056,3.02e-11,58;CL:0000355,3.02e-11,58;CL:0000317,5.75e-11,2;CL:1000448,5.75e-11,2;CL:0002308,5.75e-11,2;CL:0002140,5.75e-11,2;CL:0002600,1.14e-10,2;CL:0000187,3.45e-10,55;CL:0000393,5.95e-09,61;CL:0000211,5.95e-09,61;CL:0002567,1.59e-07,3;CL:0000192,1.64e-07,43;CL:0000514,1.64e-07,43;CL:0000594,2.34e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000355;4.26e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!3.34e-11!95;UBERON:0000914!9.57e-11!83;UBERON:0002329!9.57e-11!83;UBERON:0003077!9.57e-11!83;UBERON:0003059!9.57e-11!83;UBERON:0007282!9.57e-11!83;UBERON:0009618!9.57e-11!83;UBERON:0007285!9.57e-11!83;UBERON:0004290!1.17e-09!70;UBERON:0002385!6.03e-09!63;UBERON:0001015!6.03e-09!63;UBERON:0000383!6.03e-09!63;UBERON:0005256!6.43e-09!143;UBERON:0000486!1.23e-08!82;UBERON:0000475!3.12e-08!365;UBERON:0001134!4.01e-08!61;UBERON:0002036!4.01e-08!61;UBERON:0003082!4.01e-08!61;UBERON:0002097!2.23e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0002419;1.59e-10;2!UBERON:0007771;1.59e-10;2!UBERON:0003297;1.59e-10;2!UBERON:0001821;1.59e-10;2!UBERON:0003487;1.59e-10;2!UBERON:0001820;1.59e-10;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002419,5.75e-11,2;UBERON:0007771,5.75e-11,2;UBERON:0003297,5.75e-11,2;UBERON:0001821,5.75e-11,2;UBERON:0003487,5.75e-11,2;UBERON:0001820,5.75e-11,2;UBERON:0005089,5.75e-11,2;UBERON:0005088,5.75e-11,2;UBERON:0007503,1.69e-10,78;UBERON:0001134,2.39e-10,62;UBERON:0002036,2.39e-10,62;UBERON:0003082,2.39e-10,62;UBERON:0002329,2.99e-10,71;UBERON:0003059,2.99e-10,71;UBERON:0007282,2.99e-10,71;UBERON:0004290,2.99e-10,71;UBERON:0009618,2.99e-10,71;UBERON:0003077,4.56e-10,72;UBERON:0007285,4.56e-10,72;UBERON:0002385,6.09e-10,64;UBERON:0001015,6.09e-10,64;UBERON:0000383,6.09e-10,64;UBERON:0007524,6.86e-10,73;UBERON:0000486,2.37e-08,83 | |||
|phase1_expression=0,0.428201047781966,0.422863212287913,0,0,0,0,0,0,0,0,0.218441372130172,0.527533956456907,0,0.331397375727916,0,0,0,0.487932798790507,0,0.204000691244253,0,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0,0,0.6024118375565,1.10926203050036,0.0774672005803016,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0.334372990781356,0,0,0,0.334231370655521,0.589211814949674,0,0,0,0,0.164437904603676,0.276350017785848,0,0,0.267540828089713,1.04535523804977,0.226618685395132,0,0.34362744548263,0.506039384039006,0,0.651083453856419,0,0,0.127986611154418,1.24930726552346,0,0,0.403213486449465,0,0.144824403882799,4.87613732627923,0,0,0.361439152384566,0,0.579386075843295,0,0.486634870302636,0.283604451492204,0.221729397462564,0.087834785693126,0.327447688744282,0.728590576585084,0.370784442784429,0,0,0,0.238490624305342,0,0,0,0,0,0.56530794192401,0.419499436209906,0,0,0,0.35576626268671,0.66944122552934,0.402829317109147,0,0.24406205754817,0,0,0.0892997282840798,0.22452937262617,0.337834441449967,0,0,0,0,0,0,0,0,1.32409180813219,2.58152958673932,0.354668382198357,0,0,0.24666754841716,0,0,0,0.454072282934794,0.576175924479999,0.234321431833797,0.624320153660641,0.570471821544449,0.149448680551801,0.469737994575059,0,0.280901613404497,0.61246251376468,0.61417158655884,0.723280468230358,2.37600571456411,0.741800787835671,0,0,1.0100166837244,0.625592599359821,0.831192346452549,0,0.30648779579902,0.600952235626387,0.113432183160021,0.358779271377724,0.427114777637135,0.635795703478686,0.600182192168805,1.03052529238439,1.54584324027377,0.558350568994769,0.675105328965065,0.584622030967192,2.77677151668526,0.460249493211497,1.61646056818812,0.710019185033229,0.503760491138201,0.169560592310488,0,0.545492241181669,0,0,0,0,0,0,0,0,0.643240938192885,1.38134921352481,0,0.721879481669586,0.354920400119532,0.168584690078102,0.241011029883482,0.220587945464788,0,0.237270619111097,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0.439001141634502,0,0.301586917234893,0.277765335475589,0.651616610620649,2.07986957055916,0,0.231860809950154,0.117408694235822,0.144366447761074,0,0,0,1.71697232418975,0.246217006087397,0.234004265139238,0,0,0.16798212819886,0.283550194484773,0.179117045405697,0.581267877027924,0.766765358330422,0,0,0,0.288239906833923,0,0.190493682876507,0,1.17217447210047,1.71072446022705,0.102827492703324,0,0.285826432630578,0.224262168690721,0,0.07333828582095,0.387815147273333,0,0,0,0,0.514414748524284,0,0.799266537048298,0.57191197463259,0,0,0,0.710783897485092,0,0.301439377059586,0,0.199945982364114,0,0,0,0.239624855491583,0,0,0,1.02738161275192,0.179060963239896,0.224170287987055,0,0,0.256686072559497,0,0,0,0,0,0,0,0,0.36807447515742,0,0.542530047399471,0,0.178428988797162,0,0.702848489956279,0,0,0,0,0,0.60818530127658,0.391602314925481,0.343143423810856,0,0,0.213455115606889,0,0,0.30239029332968,0.248107807818777,0.460385919864187,0.841980283299221,0.256278298511402,1.02341449813341,0,0,0,0.355123450626254,0.246381468041427,0,0.464841513839837,0,0,0.368323955743585,0.229628896329213,0.910455840033585,0.655622074797121,0,0.15403067420883,0,0,0.105551628892876,0,0.170093705276516,0.215915916102139,0,0.270946437543853,1.00337954770971,0.254876273045038,0.831076008928724,0.447749509444357,0,0,0,0.328014645699706,0.325378394664303,0.103041011647722,0,0,1.72279661398852,1.30012049207304,0,0.193341436584244,0.308097234229289,0.307007349452259,0.137836572484531,1.07420244868274,1.45016693914229,0.170453254832202,0,0.165284915360978,0.576570202095319,2.16941611240793,0.4046311234222,0.929691098594572,2.83331112147576,0.6970372701606,0.308033580176089,1.06461206063404,0,0.74129687641568,0,0.372158369359667,0,0.190630193923825,0.255897791311334,0.855877976067841,0.636406495851874,1.56989728039846,0.179872457583315,1.09814811894422,0.235624804691373,0.606547444719948,0,0.421258456238981,0,0.731140468893853,1.05650146756755,1.09199929126389,0.282810863907425,1.13008116620243,0.551365343546124,0.66343897524122,0,1.15755106853338,1.31178950409327,0.202910376962704,0.92947049429925,0.281695602532241,0.573645408816206,0.0982490410131212,0,0.709522128141196,0.422215270595328,0,0.379473173765715,1.04980416073495,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0.459446800413919,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0.144269212976445,0,0,0,0.191505370132367,0.211673582723883,0,0.561594356226918,0,0,0,0,0,0,0.425846237690326,1.37402137902306,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0.36408156524854,0.557216921387392,0,0.23874448473769,0,0,0,0,0.222617410045812,0.329607748453519,0.211125408127993,0.19924798825107,0.276283915531148,0,0.20453736500431,0,0.933118762985422,0,0,0.511572370226872,0.295930216910801,0,1.11136990144637,0,0,0,0,0.524759999977174,0,0.1137934482855,0,0.945550727071745,0,0.291604613383254,0.173624994933292,0,0,0,0,0,0,0.32681539055697,0.139423744278603,0.384751292518985,0,0,0,0.325942115766024,0,0.0915975934018623,0.533034776018635,0,0.31396051279005,0.166211681900156,0,0.392125068635479,0.671286347903371,0,0,0,0,0.141353071433941,0,0,0,0,0,0.123563938946503,0.208843899010911,0.134802265961354,0,0.234264445725339,0,0,0.971121518136371,0,0,0,0.31593289814244,0,0,0,0.330991955875499,0,0,0,0.277349346026277,0,0.293977192243133,0.174118413160805,0,0,0,0.0730893170861856,0.164230914106418,0.193978032976839,0,0,0.411125773940253,0,0.0633107959558787,0.195551382734803,0.320635281006135,0.85381197895741,0,0,0.229073192331831,0,0.14405479798815,0.124252535565433,0.235694034616795,0.135904206073614,0.209205692624666,0.611989305817931,0.288950589901519,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121499113316049,0,0.0788057072991982,0.157363764404994,0,0.179287339332845,0,0,0,0,2.17199840701485,0,0.979762080328227,0,0.164185041498678,0.170388021785422,0.226624183040251,0.146552233678082,0,0,0,0,0,0.213574825135389,0,0,0.496166021811951,0,0.243585196761792,0,0,0,0.306345576763462,0.655745261419609,0,0,0,0.250381861413,0,0,0.0620964029413835,0,0,0.151649117541648,0,0,0,0,0,0.934853239388898,0,0.568209015825267,0.251567901752575,0,0,0.604923695052956,0,0,0.318593534327405,0,0,0.414706207840855,0.53168342911599,0.521745061811734,0.300515217994437,0.380805212168795,0,0.363697318405119,0.107410557042488,0.464033759878494,0.398095888698616,0,0,0.336749488765919,0,0,0.214441591374926,0,0.226705925512272,0,0.244736704506468,0,0.308801447160972,0,0,0,0.168942440653073,0.256241518587947,0.345430341731199,0,0.276516872303462,0,0.132864840313363,0.327130788511688,0,0.245772908753719,0,0,0.106691729694141,1.03328987796489,0,0.184105950251841,0.139879507719444,0,0,0,0,0,0,0,0,0,0,1.02520268501629,0,0,0,0.0642292250964595,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.82731361184183,0,0.781514011233092,0,0,0.147856086217045,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0.115233987555779,0.171488009437418,0,0,0,0,0.156986185701028,0,0.280272163313789,0.913158720509496,0.647782773655864,0,0.285906176706625,0,0,0,1.60342272946051,0.414432328326074,0.3414369541879,0.691259661814092,0.430227358820278,1.06498800657509,0.511280428554946,0,0,0,0,0,0.392600934460972,0,0,0,0,0,0,0.198950775161368,0,0.11294608203896,0,0,0.540219106755613,0,0,0.980593287015622,0.235676547101626,0,0,0,0,0,0,0.0999411559249289,0.178553938605658,0,0,0,0,0,0.315543124386369,0.0679914901909147,0,0,0.371995018166751,0.924351257262837,0,0,0,0.126698501011437,0,0,0,0,0.454672189309436,0,0.829169439458779,0,0.213233981900981,0.23806443146374,0,0.0620747142958579,0,0,0,0,0,0.5388164241167,0.143444410785353,0,0.244209805832924,0,0,0.269475606319761,0,0.488965776731466,0.406896178315738,0.665756774185513,0.201273793591026,0 | |||
|short_description=p@chr12:49208498..49208510,- | |||
}} |
Latest revision as of 08:54, 24 July 2015
Short description: | p@chr12:49208498..49208510, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:49208498..49208510, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 3.02e-11 | 58 |
myoblast | 3.02e-11 | 58 |
multi-potent skeletal muscle stem cell | 3.02e-11 | 58 |
sebum secreting cell | 5.75e-11 | 2 |
epithelial cell of sweat gland | 5.75e-11 | 2 |
epithelial cell of skin gland | 5.75e-11 | 2 |
acinar cell of sebaceous gland | 5.75e-11 | 2 |
smooth muscle cell of trachea | 1.14e-10 | 2 |
muscle cell | 3.45e-10 | 55 |
electrically responsive cell | 5.95e-09 | 61 |
electrically active cell | 5.95e-09 | 61 |
light melanocyte | 1.59e-07 | 3 |
smooth muscle cell | 1.64e-07 | 43 |
smooth muscle myoblast | 1.64e-07 | 43 |
skeletal muscle satellite cell | 2.34e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
skin gland | 5.75e-11 | 2 |
epidermis gland | 5.75e-11 | 2 |
gland of integumental system | 5.75e-11 | 2 |
sebaceous gland | 5.75e-11 | 2 |
skin sebaceous gland | 5.75e-11 | 2 |
sweat gland | 5.75e-11 | 2 |
sweat gland placode | 5.75e-11 | 2 |
sebaceous gland placode | 5.75e-11 | 2 |
epithelial vesicle | 1.69e-10 | 78 |
skeletal muscle tissue | 2.39e-10 | 62 |
striated muscle tissue | 2.39e-10 | 62 |
myotome | 2.39e-10 | 62 |
somite | 2.99e-10 | 71 |
presomitic mesoderm | 2.99e-10 | 71 |
presumptive segmental plate | 2.99e-10 | 71 |
dermomyotome | 2.99e-10 | 71 |
trunk paraxial mesoderm | 2.99e-10 | 71 |
paraxial mesoderm | 4.56e-10 | 72 |
presumptive paraxial mesoderm | 4.56e-10 | 72 |
muscle tissue | 6.09e-10 | 64 |
musculature | 6.09e-10 | 64 |
musculature of body | 6.09e-10 | 64 |
dense mesenchyme tissue | 6.86e-10 | 73 |
multilaminar epithelium | 2.37e-08 | 83 |