FFCP PHASE1:Hg19::chr12:25205248..25205262,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4033 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6690 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=7bp_to_uc001rgg.1,uc001rgh.2,uc001rgi.2,uc010sja.1,uc010sjb.1,uc010sjc.1,uc010sjd.1_5end | |||
|cluster_id=chr12:25205248..25205262,+ | |||
|coexpression_cluster_id=C3269 | |||
|description=CAGE_peak_8_at_LRMP_5end | |||
|id=chr12:25205248..25205262,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.16e-10!172;CL:0000566!1.16e-10!172;CL:0000988!7.19e-10!182;CL:0000838!6.51e-09!52;CL:0000542!1.23e-08!53;CL:0000051!1.23e-08!53;CL:0002032!1.93e-08!165;CL:0000837!1.93e-08!165 | |||
|ontology_enrichment_celltype_v019=CL:0002032;1.25e-09;1!CL:0000557;1.25e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,3.00e-07,168;CL:0000838,3.65e-07,52;CL:0000542,5.16e-07,53;CL:0000051,5.16e-07,53;CL:0000988,9.29e-07,177 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2531!1.33e-14!51;DOID:0060083!1.33e-14!51;DOID:1240!6.60e-10!39;DOID:0060058!8.10e-10!10;DOID:8692!9.41e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:0060058;8.00e-14;10!DOID:2531;6.71e-12;51!DOID:0060083;6.71e-12;51!DOID:0060060;4.85e-10;1!DOID:0060061;4.85e-10;1!DOID:8691;4.85e-10;1!DOID:9119;1.25e-09;1!DOID:2355;1.25e-09;1!DOID:1240;1.25e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,4.14e-18,51;DOID:0060083,4.14e-18,51;DOID:0060058,5.21e-14,10;DOID:0060060,4.46e-10,1;DOID:0060061,4.46e-10,1;DOID:8691,4.46e-10,1;DOID:2355,8.17e-10,1;DOID:1240,1.09e-09,39;DOID:9119,1.15e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.30e-26!115;UBERON:0002619!5.10e-10!22;UBERON:0001950!1.07e-09!20;UBERON:0001893!3.46e-09!34;UBERON:0002020!3.90e-09!34;UBERON:0003528!3.90e-09!34;UBERON:0002780!5.67e-09!41;UBERON:0001890!5.67e-09!41;UBERON:0006240!5.67e-09!41;UBERON:0001869!6.91e-09!32;UBERON:0003080!1.20e-08!42;UBERON:0001049!1.51e-08!57;UBERON:0005068!1.51e-08!57;UBERON:0006241!1.51e-08!57;UBERON:0007135!1.51e-08!57;UBERON:0002791!1.84e-08!33;UBERON:0000956!1.89e-08!25;UBERON:0000203!1.89e-08!25;UBERON:0002616!4.62e-08!59;UBERON:0000955!1.90e-07!69;UBERON:0006238!1.90e-07!69;UBERON:0001871!6.16e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.58e-17;2!UBERON:0005058;1.58e-17;2!UBERON:0009113;1.58e-17;2!UBERON:0004177;1.50e-07;5!UBERON:0005057;1.50e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.04e-09,4;UBERON:0005058,3.04e-09,4;UBERON:0009113,3.04e-09,4;UBERON:0003295,3.04e-09,4;UBERON:0005562,3.04e-09,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687720651731561,0.985207073399349,1.57421562627358,0.393364276848904,0.383829398097213,0,0,0,0,1.70427841276664,0.142169232487422,0.587200878669695,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35426486594342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0,0.790152254325231,0.393419540227666,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0.328875809207352,0,0,0.296573126324121,0,0,0.113309342697566,0,0.34362744548263,0,0,0,0,0,0.127986611154418,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0.132957960518865,0,0,0.371457501329565,0,0,0,0,0,0,0,1.29208379584664,0.71153252537342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.85609409356116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0.414656231081544,0.288239906833923,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13733384070897,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,1.01489521846434,0,0,0.238231775457789,0,1.29694662238543,0.540031437238115,0,0,0,0,0,0.28853842595289,3.62823401076912,1.27541018183058,1.1974762285969,0,0.846694330895531,0,0.280797178113459,0,0,0,0.677167111206413,1.605880751037,0.201799707191048,0,0.687010689511529,0.307240764308458,0.223676107892416,0.166849141711909,0.19538809540204,0,0,1.6227340708559,1.33228787199128,0,0.18714054040822,0.879049075631364,0,0.111443384277478,0,0,0,0,0.994147647766298,2.53204949538923,0,0,0,0.796991953004279,0.276283915531148,0,0,0.246169610922139,0,0,0,0,0.0986434056369336,0,0,0.969332746095218,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0,0,0,1.02193298195737,0,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50648636764703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27746588066972,0,0,0.279282401272254,0.229160424011684,0,0,0.429226048136571,0,0,0,0,0,0,0,0,1.6087933092499,0,0.272406812223151,0,0,0,0.2249738915515,0,0.182248669974074,0,0.630445658393585,0.209818352539992,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.533937062838473,0.157204305099666,0.828478110694391,0,0.790446527591777,0.852548188666271,0,0,0.2506898940227,0,0,0,0,0.244052529803926,0.625954653532499,0.573409195690071,0.887432412294818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829550616910385,0,0,0,0,0,0,2.79982354196902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89268188003008,0,0,0,0.128458450192919,0,1.11743701340006,0.41023272848151,0,0,0.484426936895553,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.202612753855184,0,0.413373593002368,0.253663240775627,0,0,0,0,0,0,0,0.606965604236632,0.227662191351298,0,0.345701962667338,0,2.24300118823545,0.0657727735628491,0,0,0.627944742804112,0,0,0,0,0,0.357382720883282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205325613712494,0,0.971421986118279,0,0,0,0,0,0,0.154348316215889,0.218559560503957,0,0.490296643507811,0,0,0,0,0,0,0,0.399764623699716,0,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714193294391221,1.0980114672121,1.80016671457988,0,0.509177266225319,0.202117188958219,0,0,0.134704106029175,0.143444410785353,0,0,0,0,0,0,0.122241444182866,0.406896178315738,0.665756774185513,0,0 | |||
|short_description=p8@LRMP | |||
}} |
Latest revision as of 22:23, 17 September 2015
Short description: | p8@LRMP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LRMP_5end |
Coexpression cluster: | C3269_Hodgkin_thymus_acute_Burkitt_mycosis_non_B |
Association with transcript: | 7bp_to_uc001rgg.1, uc001rgh.2, uc001rgi.2, uc010sja.1, uc010sjb.1, uc010sjc.1, uc010sjd.1_5end |
EntrezGene: | LRMP |
HGNC: | 6690 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 3.00e-07 | 168 |
lymphoid lineage restricted progenitor cell | 3.65e-07 | 52 |
lymphocyte | 5.16e-07 | 53 |
common lymphoid progenitor | 5.16e-07 | 53 |
hematopoietic cell | 9.29e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
thymus | 3.04e-09 | 4 |
hemolymphoid system gland | 3.04e-09 | 4 |
thymic region | 3.04e-09 | 4 |
pharyngeal gland | 3.04e-09 | 4 |
thymus primordium | 3.04e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 4.14e-18 | 51 |
immune system cancer | 4.14e-18 | 51 |
lymphoma | 5.21e-14 | 10 |
non-Hodgkin lymphoma | 4.46e-10 | 1 |
cutaneous T cell lymphoma | 4.46e-10 | 1 |
mycosis fungoides | 4.46e-10 | 1 |
anemia | 8.17e-10 | 1 |
leukemia | 1.09e-09 | 39 |
acute myeloid leukemia | 1.15e-09 | 1 |