FFCP PHASE1:Hg19::chr8:133637624..133637635,-: Difference between revisions
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|id=chr8:133637624..133637635,-
|short_description=p5@LRRC6
|description=CAGE_peak_5_at_LRRC6_5end
|association_with_transcript=0bp_to_ENST00000522789_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23639 | |EntrezGene=23639 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16725 | |HGNC=16725 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000522789_5end | |||
|cluster_id=chr8:133637624..133637635,- | |||
|coexpression_cluster_id=C45 | |||
|description=CAGE_peak_5_at_LRRC6_5end | |||
|id=chr8:133637624..133637635,- | |||
|ontology_enrichment_celltype=CL:0000039!4.80e-25!7;CL:0000586!4.80e-25!7;CL:0002322!2.47e-09!5;CL:0000540!4.82e-08!6;CL:0000031!4.82e-08!6;CL:0000404!4.82e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000039;3.15e-112;7!CL:0000586;3.15e-112;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,3.15e-112,7;CL:0000586,3.15e-112,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;5.78e-79;10!UBERON:0005564;5.78e-79;10!UBERON:0006603;8.18e-08;65 | |||
|ontology_enrichment_disease=DOID:0060085!8.64e-12!1;DOID:3165!8.64e-12!1;DOID:0060121!8.64e-12!1;DOID:2438!8.64e-12!1;DOID:4418!8.64e-12!1;DOID:3095!4.05e-08!22;DOID:2994!4.05e-08!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.49e-36;22!DOID:2994;1.49e-36;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.49e-36,22;DOID:2994,1.49e-36,22;DOID:305,2.62e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0000473!5.89e-22!8;UBERON:0003135!4.78e-16!11;UBERON:0002146!6.97e-12!1;UBERON:0005623!6.97e-12!1;UBERON:0007190!1.81e-11!1;UBERON:0002021!2.68e-09!5;UBERON:0000991!1.69e-08!21;UBERON:0009196!1.69e-08!21;UBERON:0009117!1.69e-08!21;UBERON:0005564!1.69e-08!21;UBERON:0004176!4.05e-08!22;UBERON:0003101!4.05e-08!22;UBERON:0000079!4.05e-08!22;UBERON:0002323!5.51e-08!46;UBERON:0004458!1.81e-07!49 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.26e-98;8!UBERON:0003135;6.65e-72;11!UBERON:0000991;3.06e-38;21!UBERON:0003101;1.49e-36;22!UBERON:0000079;1.49e-36;22!UBERON:0002323;4.90e-17;45!UBERON:0003133;5.62e-14;44!UBERON:0000922;1.74e-13;49!UBERON:0002553;4.72e-11;52!UBERON:0004458;1.35e-09;48!UBERON:0005156;4.32e-09;59!UBERON:0000990;4.32e-09;59 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.26e-98,8;UBERON:0003135,6.65e-72,11;UBERON:0000991,3.06e-38,21;UBERON:0009196,3.06e-38,21;UBERON:0009117,3.06e-38,21;UBERON:0005564,3.06e-38,21;UBERON:0004176,1.49e-36,22;UBERON:0003101,1.49e-36,22;UBERON:0000079,1.49e-36,22;UBERON:0002323,5.01e-18,46;UBERON:0003133,2.57e-17,48;UBERON:0004458,5.55e-17,49;UBERON:0003886,1.70e-15,54;UBERON:0005156,2.92e-14,59;UBERON:0000990,2.92e-14,59;UBERON:0002553,7.99e-14,61 | |||
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|short_description=p5@LRRC6 | |||
}} | }} |
Latest revision as of 10:50, 16 September 2015
Short description: | p5@LRRC6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LRRC6_5end |
Coexpression cluster: | C45_testicular_choriocarcinoma_H9_teratocarcinoma_Wilms_pancreatic_iPS |
Association with transcript: | 0bp_to_ENST00000522789_5end |
EntrezGene: | LRRC6 |
HGNC: | 16725 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 3.15e-112 | 7 |
germ cell | 3.15e-112 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 2.26e-98 | 8 |
male reproductive organ | 6.65e-72 | 11 |
gonad | 3.06e-38 | 21 |
indifferent external genitalia | 3.06e-38 | 21 |
indifferent gonad | 3.06e-38 | 21 |
gonad primordium | 3.06e-38 | 21 |
external genitalia | 1.49e-36 | 22 |
male organism | 1.49e-36 | 22 |
male reproductive system | 1.49e-36 | 22 |
body cavity | 5.01e-18 | 46 |
reproductive organ | 2.57e-17 | 48 |
body cavity or lining | 5.55e-17 | 49 |
body cavity precursor | 1.70e-15 | 54 |
reproductive structure | 2.92e-14 | 59 |
reproductive system | 2.92e-14 | 59 |
anatomical cavity | 7.99e-14 | 61 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.49e-36 | 22 |
germ cell cancer | 1.49e-36 | 22 |
carcinoma | 2.62e-08 | 106 |