FFCP PHASE1:Hg19::chr11:842928..842980,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7106 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11859 | |||
|TSSclassifier=strong | |||
|UniProt=O14817 | |||
|association_with_transcript=0bp_to_ENST00000397408,NM_001025235,NM_001025236,uc001lsg.1,uc001lsh.1_5end | |||
|cluster_id=chr11:842928..842980,+ | |||
|coexpression_cluster_id=C3206 | |||
|description=CAGE_peak_3_at_TSPAN4_5end | |||
|id=chr11:842928..842980,+ | |||
|ontology_enrichment_celltype=CL:0000055!7.69e-38!180;CL:0002321!1.35e-24!248;CL:0000220!1.99e-24!246;CL:0000222!4.24e-24!119;CL:0000183!4.19e-19!59;CL:0000548!1.59e-18!679;CL:0000004!1.59e-18!679;CL:0000255!1.59e-18!679;CL:0000680!5.19e-18!57;CL:0000056!5.19e-18!57;CL:0000355!5.19e-18!57;CL:0000012!6.13e-18!682;CL:0000187!8.21e-17!54;CL:0000057!1.03e-16!75;CL:0000144!2.53e-15!625;CL:0000393!1.94e-14!60;CL:0000211!1.94e-14!60;CL:0000192!2.63e-14!42;CL:0000514!2.63e-14!42;CL:0002371!3.86e-14!591;CL:0000066!8.30e-11!254;CL:0000359!2.85e-10!32;CL:0000003!4.40e-07!722;CL:0000213!6.95e-07!57;CL:0000215!6.95e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000192;1.29e-10;43!CL:0000187;4.76e-10;55!CL:0000359;6.39e-10;32!CL:0000393;9.30e-08;61!CL:0000211;9.30e-08;61!CL:0000057;5.62e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,5.17e-25,121;CL:0002321,1.24e-24,250;CL:0000680,9.80e-19,58;CL:0000056,9.80e-19,58;CL:0000355,9.80e-19,58;CL:0000187,1.68e-17,55;CL:0000057,3.32e-17,76;CL:0000192,6.50e-15,43;CL:0000514,6.50e-15,43;CL:0000393,8.73e-15,61;CL:0000211,8.73e-15,61;CL:0000359,1.61e-10,32;CL:0000066,8.15e-10,253;CL:0000213,4.72e-07,58;CL:0000215,4.72e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000514;1.29e-10;43!CL:0000355;4.56e-10;58!CL:0000222;3.63e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.19e-18!143;UBERON:0000914!3.38e-18!83;UBERON:0002329!3.38e-18!83;UBERON:0003077!3.38e-18!83;UBERON:0003059!3.38e-18!83;UBERON:0007282!3.38e-18!83;UBERON:0009618!3.38e-18!83;UBERON:0007285!3.38e-18!83;UBERON:0004290!6.27e-18!70;UBERON:0000486!1.32e-17!82;UBERON:0002100!1.80e-17!216;UBERON:0001134!1.89e-16!61;UBERON:0002036!1.89e-16!61;UBERON:0003082!1.89e-16!61;UBERON:0003104!3.20e-16!238;UBERON:0009142!3.20e-16!238;UBERON:0002385!1.32e-15!63;UBERON:0001015!1.32e-15!63;UBERON:0000383!1.32e-15!63;UBERON:0002049!5.55e-15!79;UBERON:0007798!5.55e-15!79;UBERON:0000490!1.55e-14!138;UBERON:0003914!3.37e-13!118;UBERON:0000475!5.73e-12!365;UBERON:0000481!6.15e-12!347;UBERON:0000119!6.92e-12!312;UBERON:0000483!2.99e-11!309;UBERON:0004872!6.52e-11!84;UBERON:0000055!1.56e-10!69;UBERON:0001637!6.85e-10!42;UBERON:0003509!6.85e-10!42;UBERON:0004572!6.85e-10!42;UBERON:0004535!1.90e-09!110;UBERON:0001981!1.95e-09!60;UBERON:0007500!1.95e-09!60;UBERON:0004537!1.95e-09!60;UBERON:0006965!1.95e-09!60;UBERON:0001009!8.88e-09!113;UBERON:0004573!3.98e-08!33;UBERON:0004571!3.98e-08!33;UBERON:0000468!1.19e-07!659;UBERON:0000477!2.09e-07!286;UBERON:0003102!4.47e-07!95;UBERON:0000926!5.52e-07!448;UBERON:0004120!5.52e-07!448;UBERON:0006603!5.52e-07!448;UBERON:0001048!8.53e-07!168 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.56e-07;42!UBERON:0003509;1.56e-07;42!UBERON:0004572;1.56e-07;42!UBERON:0004573;1.72e-07;33!UBERON:0004571;1.72e-07;33!UBERON:0002049;1.88e-07;75!UBERON:0007798;1.88e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,3.89e-21,78;UBERON:0002329,1.88e-18,71;UBERON:0003059,1.88e-18,71;UBERON:0007282,1.88e-18,71;UBERON:0004290,1.88e-18,71;UBERON:0009618,1.88e-18,71;UBERON:0007524,2.77e-18,73;UBERON:0000486,3.89e-18,83;UBERON:0003077,1.09e-17,72;UBERON:0007285,1.09e-17,72;UBERON:0001134,6.36e-17,62;UBERON:0002036,6.36e-17,62;UBERON:0003082,6.36e-17,62;UBERON:0003104,7.22e-17,160;UBERON:0009142,7.22e-17,160;UBERON:0002385,6.35e-16,64;UBERON:0001015,6.35e-16,64;UBERON:0000383,6.35e-16,64;UBERON:0002100,6.92e-16,199;UBERON:0000490,7.09e-16,148;UBERON:0005256,1.30e-15,122;UBERON:0002049,2.15e-15,78;UBERON:0007798,2.15e-15,78;UBERON:0003914,1.04e-12,117;UBERON:0000055,6.83e-11,68;UBERON:0004872,7.66e-11,83;UBERON:0001637,3.96e-10,42;UBERON:0003509,3.96e-10,42;UBERON:0004572,3.96e-10,42;UBERON:0000119,4.40e-10,309;UBERON:0004535,5.98e-10,109;UBERON:0007500,1.13e-09,59;UBERON:0001981,1.13e-09,59;UBERON:0004537,1.13e-09,59;UBERON:0006965,1.13e-09,59;UBERON:0000483,1.72e-09,306;UBERON:0001009,3.71e-09,112;UBERON:0004573,2.58e-08,33;UBERON:0004571,2.58e-08,33;UBERON:0003102,6.91e-07,99 | |||
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| |||
|short_description=p3@TSPAN4 | |||
}} |
Latest revision as of 20:03, 24 September 2015
Short description: | p3@TSPAN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TSPAN4_5end |
Coexpression cluster: | C3206_Mesenchymal_Osteoblast_tenocyte_Synoviocyte_Alveolar_Fibroblast_Smooth |
Association with transcript: | 0bp_to_ENST00000397408, NM_001025235, NM_001025236, uc001lsg.1, uc001lsh.1_5end |
EntrezGene: | TSPAN4 |
HGNC: | 11859 |
UniProt: | O14817 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 5.17e-25 | 121 |
embryonic cell | 1.24e-24 | 250 |
muscle precursor cell | 9.80e-19 | 58 |
myoblast | 9.80e-19 | 58 |
multi-potent skeletal muscle stem cell | 9.80e-19 | 58 |
muscle cell | 1.68e-17 | 55 |
fibroblast | 3.32e-17 | 76 |
smooth muscle cell | 6.50e-15 | 43 |
smooth muscle myoblast | 6.50e-15 | 43 |
electrically responsive cell | 8.73e-15 | 61 |
electrically active cell | 8.73e-15 | 61 |
vascular associated smooth muscle cell | 1.61e-10 | 32 |
epithelial cell | 8.15e-10 | 253 |
lining cell | 4.72e-07 | 58 |
barrier cell | 4.72e-07 | 58 |