FFCP PHASE1:Hg19::chr11:123501964..123501974,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55800 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=20665 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-27bp_to_AK055033_5end | |||
|cluster_id=chr11:123501964..123501974,- | |||
|coexpression_cluster_id=C16 | |||
|description=CAGE_peak_24_at_SCN3B_5end | |||
|id=chr11:123501964..123501974,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:169!8.66e-10!6 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.89e-57!34;UBERON:0003528!1.89e-57!34;UBERON:0001869!1.69e-56!32;UBERON:0001893!6.32e-53!34;UBERON:0002619!2.62e-50!22;UBERON:0002791!9.34e-50!33;UBERON:0001049!4.74e-48!57;UBERON:0005068!4.74e-48!57;UBERON:0006241!4.74e-48!57;UBERON:0007135!4.74e-48!57;UBERON:0000073!1.14e-47!94;UBERON:0001016!1.14e-47!94;UBERON:0001017!2.18e-44!82;UBERON:0000955!3.94e-44!69;UBERON:0006238!3.94e-44!69;UBERON:0000956!5.74e-44!25;UBERON:0000203!5.74e-44!25;UBERON:0001950!1.97e-43!20;UBERON:0002780!4.22e-43!41;UBERON:0001890!4.22e-43!41;UBERON:0006240!4.22e-43!41;UBERON:0002616!8.51e-43!59;UBERON:0005743!5.46e-42!86;UBERON:0003080!5.85e-42!42;UBERON:0003075!2.48e-34!86;UBERON:0007284!2.48e-34!86;UBERON:0002346!1.75e-32!90;UBERON:0003056!7.14e-30!61;UBERON:0007023!5.88e-26!115;UBERON:0004121!1.58e-24!169;UBERON:0001871!8.60e-24!7;UBERON:0000924!9.24e-24!173;UBERON:0006601!9.24e-24!173;UBERON:0000033!1.74e-23!123;UBERON:0000153!4.74e-22!129;UBERON:0007811!4.74e-22!129;UBERON:0002420!4.65e-15!9;UBERON:0007245!4.65e-15!9;UBERON:0010009!4.65e-15!9;UBERON:0010011!4.65e-15!9;UBERON:0000454!4.65e-15!9;UBERON:0002308!1.21e-14!9;UBERON:0000125!1.21e-14!9;UBERON:0000349!8.56e-13!5;UBERON:0002021!1.52e-12!5;UBERON:0000013!1.00e-11!5;UBERON:0002410!1.00e-11!5;UBERON:0000988!3.26e-11!3;UBERON:0000025!3.48e-11!194;UBERON:0000200!1.43e-10!6;UBERON:0000064!6.57e-10!219;UBERON:0000483!1.60e-09!309;UBERON:0000119!2.39e-09!312;UBERON:0009663!4.30e-09!7;UBERON:0001954!6.59e-09!2;UBERON:0003022!6.59e-09!2;UBERON:0002421!6.59e-09!2;UBERON:0002600!6.59e-09!2;UBERON:0001876!8.98e-09!2;UBERON:0001875!1.18e-08!2;UBERON:0006514!1.18e-08!2;UBERON:0004111!2.34e-08!241;UBERON:0002148!3.92e-08!2;UBERON:0009662!3.92e-08!2;UBERON:0003076!5.49e-08!15;UBERON:0003057!5.49e-08!15;UBERON:0000475!1.92e-07!365;UBERON:0001872!2.72e-07!5;UBERON:0000477!3.22e-07!286;UBERON:0002298!3.53e-07!8;UBERON:0004733!4.09e-07!12;UBERON:0002028!4.09e-07!12;UBERON:0007277!4.09e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0001871;3.16e-29;6!UBERON:0002771;4.32e-26;2!UBERON:0001950;4.76e-22;20!UBERON:0002619;3.18e-20;22!UBERON:0000956;5.19e-18;25!UBERON:0000203;5.19e-18;25!UBERON:0002791;6.20e-15;32!UBERON:0001869;6.20e-15;32!UBERON:0001893;3.95e-14;34!UBERON:0003528;7.80e-13;34!UBERON:0002020;7.80e-13;34!UBERON:0002021;3.26e-11;5!UBERON:0000200;1.22e-09;6!UBERON:0000955;2.64e-08;68!UBERON:0002780;2.68e-08;41!UBERON:0001890;2.68e-08;41!UBERON:0001016;9.78e-08;83!UBERON:0001017;2.46e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001871,3.65e-29,6;UBERON:0002771,4.32e-26,2;UBERON:0001950,5.11e-22,20;UBERON:0002619,3.39e-20,22;UBERON:0000956,5.50e-18,25;UBERON:0000203,5.50e-18,25;UBERON:0002791,2.21e-14,32;UBERON:0001869,2.21e-14,32;UBERON:0003528,1.29e-13,34;UBERON:0002020,1.29e-13,34;UBERON:0001893,1.29e-13,34;UBERON:0000955,3.68e-12,68;UBERON:0006238,3.68e-12,68;UBERON:0002780,1.67e-11,41;UBERON:0001890,1.67e-11,41;UBERON:0003080,1.67e-11,41;UBERON:0006240,1.67e-11,41;UBERON:0002021,3.26e-11,5;UBERON:0001017,2.17e-10,81;UBERON:0000200,1.22e-09,6;UBERON:0001016,1.88e-09,89;UBERON:0000073,3.82e-09,53;UBERON:0002616,3.82e-09,53;UBERON:0001049,1.04e-08,56;UBERON:0005068,1.04e-08,56;UBERON:0006241,1.04e-08,56;UBERON:0007135,1.04e-08,56;UBERON:0003056,4.50e-08,61 | |||
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|short_description=p24@SCN3B | |||
}} |
Latest revision as of 10:15, 16 September 2015
Short description: | p24@SCN3B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_24_at_SCN3B_5end |
Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
Association with transcript: | -27bp_to_AK055033_5end |
EntrezGene: | SCN3B |
HGNC: | 20665 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
temporal lobe | 3.65e-29 | 6 |
middle temporal gyrus | 4.32e-26 | 2 |
neocortex | 5.11e-22 | 20 |
regional part of cerebral cortex | 3.39e-20 | 22 |
cerebral cortex | 5.50e-18 | 25 |
pallium | 5.50e-18 | 25 |
regional part of telencephalon | 2.21e-14 | 32 |
cerebral hemisphere | 2.21e-14 | 32 |
brain grey matter | 1.29e-13 | 34 |
gray matter | 1.29e-13 | 34 |
telencephalon | 1.29e-13 | 34 |
brain | 3.68e-12 | 68 |
future brain | 3.68e-12 | 68 |
regional part of forebrain | 1.67e-11 | 41 |
forebrain | 1.67e-11 | 41 |
anterior neural tube | 1.67e-11 | 41 |
future forebrain | 1.67e-11 | 41 |
occipital lobe | 3.26e-11 | 5 |
central nervous system | 2.17e-10 | 81 |
gyrus | 1.22e-09 | 6 |
nervous system | 1.88e-09 | 89 |
regional part of nervous system | 3.82e-09 | 53 |
regional part of brain | 3.82e-09 | 53 |
neural tube | 1.04e-08 | 56 |
neural rod | 1.04e-08 | 56 |
future spinal cord | 1.04e-08 | 56 |
neural keel | 1.04e-08 | 56 |
pre-chordal neural plate | 4.50e-08 | 61 |