FFCP PHASE1:Hg19::chr10:17686193..17686220,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8027 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11357 | |||
|TSSclassifier=strong | |||
|UniProt=A6NMU3,C9J1E5 | |||
|association_with_transcript=0bp_to_ENST00000377500,ENST00000445846_5end | |||
|cluster_id=chr10:17686193..17686220,+ | |||
|description=CAGE_peak_3_at_STAM_5end | |||
|id=chr10:17686193..17686220,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.33e-18!94;UBERON:0001016!5.33e-18!94;UBERON:0005743!5.81e-17!86;UBERON:0001017!3.55e-16!82;UBERON:0000955!1.11e-12!69;UBERON:0006238!1.11e-12!69;UBERON:0001049!7.74e-11!57;UBERON:0005068!7.74e-11!57;UBERON:0006241!7.74e-11!57;UBERON:0007135!7.74e-11!57;UBERON:0002616!9.33e-11!59;UBERON:0002780!1.30e-10!41;UBERON:0001890!1.30e-10!41;UBERON:0006240!1.30e-10!41;UBERON:0001893!1.80e-10!34;UBERON:0001869!2.46e-10!32;UBERON:0002791!5.22e-10!33;UBERON:0003080!5.31e-10!42;UBERON:0003075!1.17e-09!86;UBERON:0007284!1.17e-09!86;UBERON:0002020!1.73e-09!34;UBERON:0003528!1.73e-09!34;UBERON:0002346!2.62e-09!90;UBERON:0003056!2.72e-09!61;UBERON:0004121!4.36e-09!169;UBERON:0000956!4.98e-09!25;UBERON:0000203!4.98e-09!25;UBERON:0000924!6.25e-09!173;UBERON:0006601!6.25e-09!173;UBERON:0002619!1.05e-08!22;UBERON:0001950!4.02e-08!20;UBERON:0000153!4.40e-07!129;UBERON:0007811!4.40e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.82e-09;32!UBERON:0001893;2.44e-09;34!UBERON:0000956;6.34e-09;25!UBERON:0000203;6.34e-09;25!UBERON:0002791;6.50e-09;32!UBERON:0003528;1.40e-08;34!UBERON:0002020;1.40e-08;34!UBERON:0002619;1.96e-08;22!UBERON:0001950;6.87e-08;20!UBERON:0002780;7.92e-08;41!UBERON:0001890;7.92e-08;41!UBERON:0000073;4.99e-07;53!UBERON:0002616;4.99e-07;53!UBERON:0001016;5.61e-07;83!UBERON:0001017;6.87e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.58e-18,89;UBERON:0001017,9.87e-17,81;UBERON:0000955,3.35e-13,68;UBERON:0006238,3.35e-13,68;UBERON:0001049,2.28e-11,56;UBERON:0005068,2.28e-11,56;UBERON:0006241,2.28e-11,56;UBERON:0007135,2.28e-11,56;UBERON:0000073,1.12e-10,53;UBERON:0002616,1.12e-10,53;UBERON:0002780,1.30e-10,41;UBERON:0001890,1.30e-10,41;UBERON:0003080,1.30e-10,41;UBERON:0006240,1.30e-10,41;UBERON:0001893,1.80e-10,34;UBERON:0001869,2.45e-10,32;UBERON:0003056,9.47e-10,61;UBERON:0002791,1.38e-09,32;UBERON:0003528,1.73e-09,34;UBERON:0002020,1.73e-09,34;UBERON:0000956,4.97e-09,25;UBERON:0000203,4.97e-09,25;UBERON:0003075,5.07e-09,82;UBERON:0007284,5.07e-09,82;UBERON:0002619,1.04e-08,22;UBERON:0002346,1.11e-08,86;UBERON:0004121,1.68e-08,171;UBERON:0000924,1.68e-08,171;UBERON:0006601,1.68e-08,171;UBERON:0001950,4.01e-08,20;UBERON:0010371,4.85e-07,104 | |||
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| |||
|short_description=p3@STAM | |||
}} |
Latest revision as of 11:29, 17 September 2015
Short description: | p3@STAM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_STAM_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000377500, ENST00000445846_5end |
EntrezGene: | STAM |
HGNC: | 11357 |
UniProt: | A6NMU3C9J1E5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 9.58e-18 | 89 |
central nervous system | 9.87e-17 | 81 |
brain | 3.35e-13 | 68 |
future brain | 3.35e-13 | 68 |
neural tube | 2.28e-11 | 56 |
neural rod | 2.28e-11 | 56 |
future spinal cord | 2.28e-11 | 56 |
neural keel | 2.28e-11 | 56 |
regional part of nervous system | 1.12e-10 | 53 |
regional part of brain | 1.12e-10 | 53 |
regional part of forebrain | 1.30e-10 | 41 |
forebrain | 1.30e-10 | 41 |
anterior neural tube | 1.30e-10 | 41 |
future forebrain | 1.30e-10 | 41 |
telencephalon | 1.80e-10 | 34 |
cerebral hemisphere | 2.45e-10 | 32 |
pre-chordal neural plate | 9.47e-10 | 61 |
regional part of telencephalon | 1.38e-09 | 32 |
brain grey matter | 1.73e-09 | 34 |
gray matter | 1.73e-09 | 34 |
cerebral cortex | 4.97e-09 | 25 |
pallium | 4.97e-09 | 25 |
neural plate | 5.07e-09 | 82 |
presumptive neural plate | 5.07e-09 | 82 |
regional part of cerebral cortex | 1.04e-08 | 22 |
neurectoderm | 1.11e-08 | 86 |
ectoderm-derived structure | 1.68e-08 | 171 |
ectoderm | 1.68e-08 | 171 |
presumptive ectoderm | 1.68e-08 | 171 |
neocortex | 4.01e-08 | 20 |
ecto-epithelium | 4.85e-07 | 104 |