FFCP PHASE1:Hg19::chr10:118031730..118031758,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2674 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4243 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=35bp_to_ENST00000369236_5end | |||
|cluster_id=chr10:118031730..118031758,- | |||
|coexpression_cluster_id=C1565 | |||
|description=CAGE_peak_1_at_GFRA1_5end | |||
|id=chr10:118031730..118031758,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:1000497;5.31e-07;17!CL:0002518;5.31e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,6.44e-07,17;CL:0002518,6.44e-07,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.13e-23!115;UBERON:0000475!5.07e-19!365;UBERON:0003075!2.64e-16!86;UBERON:0007284!2.64e-16!86;UBERON:0001049!2.75e-15!57;UBERON:0005068!2.75e-15!57;UBERON:0006241!2.75e-15!57;UBERON:0007135!2.75e-15!57;UBERON:0005743!8.03e-15!86;UBERON:0002346!1.75e-14!90;UBERON:0002616!1.97e-14!59;UBERON:0000955!2.82e-14!69;UBERON:0006238!2.82e-14!69;UBERON:0003056!2.91e-14!61;UBERON:0000153!4.90e-14!129;UBERON:0007811!4.90e-14!129;UBERON:0001017!5.34e-14!82;UBERON:0000481!6.24e-14!347;UBERON:0000033!1.69e-13!123;UBERON:0000073!7.84e-13!94;UBERON:0001016!7.84e-13!94;UBERON:0003080!1.18e-12!42;UBERON:0002780!4.79e-12!41;UBERON:0001890!4.79e-12!41;UBERON:0006240!4.79e-12!41;UBERON:0002020!9.34e-11!34;UBERON:0003528!9.34e-11!34;UBERON:0001893!1.09e-10!34;UBERON:0000468!1.53e-10!659;UBERON:0002791!1.78e-10!33;UBERON:0001869!2.39e-10!32;UBERON:0004121!2.87e-10!169;UBERON:0000483!6.32e-10!309;UBERON:0000119!7.68e-10!312;UBERON:0000924!2.24e-09!173;UBERON:0006601!2.24e-09!173;UBERON:0000477!6.63e-09!286;UBERON:0000956!8.50e-08!25;UBERON:0000203!8.50e-08!25;UBERON:0004111!2.76e-07!241;UBERON:0000062!8.32e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.49e-08;34!UBERON:0002791;2.60e-08;32!UBERON:0003528;2.84e-08;34!UBERON:0002020;2.84e-08;34!UBERON:0001869;3.08e-08;32!UBERON:0002780;4.80e-07;41!UBERON:0001890;4.80e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.53e-22,114;UBERON:0003075,7.45e-14,82;UBERON:0007284,7.45e-14,82;UBERON:0002346,2.00e-12,86;UBERON:0003056,1.83e-11,61;UBERON:0001049,8.11e-11,56;UBERON:0005068,8.11e-11,56;UBERON:0006241,8.11e-11,56;UBERON:0007135,8.11e-11,56;UBERON:0010371,3.10e-10,104;UBERON:0000955,5.02e-10,68;UBERON:0006238,5.02e-10,68;UBERON:0001017,9.87e-10,81;UBERON:0000073,1.12e-09,53;UBERON:0002616,1.12e-09,53;UBERON:0003528,2.00e-09,34;UBERON:0002020,2.00e-09,34;UBERON:0002780,2.31e-09,41;UBERON:0001890,2.31e-09,41;UBERON:0003080,2.31e-09,41;UBERON:0006240,2.31e-09,41;UBERON:0001893,2.35e-09,34;UBERON:0011216,5.42e-09,223;UBERON:0002791,6.08e-09,32;UBERON:0001869,6.30e-09,32;UBERON:0010314,8.16e-09,132;UBERON:0001016,1.05e-08,89;UBERON:0004121,2.82e-08,171;UBERON:0000924,2.82e-08,171;UBERON:0006601,2.82e-08,171;UBERON:0000483,9.74e-08,306;UBERON:0000119,2.17e-07,309;UBERON:0000489,3.77e-07,31 | |||
|phase1_expression=1.45342703416445,0.428201047781966,0.845726424575827,0,0,0,2.53299878168311,1.26343974685366,2.35067065379855,2.21160542851358,5.58240934377942,0,0,0.866364470720326,1.98838425436749,0,0,0,0,5.29420549730188,6.12002073732759,5.32873026512749,2.0036519099174,6.98059567871709,6.90484517771415,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,13.7346877906135,3.00802746381534,6.22840031531542,0,0.486634870302636,12.0059217798366,7.31707011626461,7.46595678391571,2.16115474571226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67360306382335,4.02829317109147,1.52054421143703,3.1728067481262,0,0,0,0,0,0,0,0,0,0,0,3.47880366186723,0,0,0,0.354668382198357,1.68203280042692,0,0.49333509683432,0,0.134710672069688,0,0.302714855289863,0,0.70296429550139,0,0,0,0.469737994575059,0.809364721840658,0.842704840213491,0,0.245668634623536,0,1.18800285728205,0.741800787835671,0.910161361938026,2.15585442544872,0,0.125118519871964,0,1.31693286264251,0.612975591598039,0.600952235626387,0,2.69084453533293,4.69826255400848,4.66250182551036,0,1.64884046781502,3.86460810068444,10.0503102419058,0.337552664482532,0.0974370051611986,6.81571190459109,6.07529331039176,6.62748832957129,12.7803453305981,4.03008392910561,2.54340888465731,0,0,0,0.365921118388786,0.132529768321485,0.232387885739037,1.0366105501537,0,0,6.25798129319264,17.3675053312079,0,7.89425477654364,0.721879481669586,0,0,0,0,0,0,0,0,0,0,2.80483547606892,0.8231480226628,2.94017422771084,7.60530208930985,4.91413608338813,5.31710916013264,0,0,14.4116960650761,0,0,0,0,1.62904152655162,0,7.21656710126366,8.23105875323045,2.81780866165972,7.94015462685906,8.33373922637899,5.13686211033415,141.44658723471,139.074758259369,0,0,0,0,0.16798212819886,0,0,0,0.383382679165211,0.492663237895943,1.58487181223807,0.207328115540772,0.576479813667846,0.6312121671319,0.253991577168676,2.67391897890794,1.17217447210047,0,0.102827492703324,0,0,0.112131084345361,0,0.1466765716419,2.84397774667111,3.57656445851882,0,2.39344304926383,4.16029747645464,0,2.83698264046557,0.532844358032199,0,0,0,0.325736184293735,0.355391948742546,0,0,0,0.399891964728228,0,0,0,5.75099653179798,9.18895486672911,1.42636905040718,4.92256442669769,1.84928690295345,12.3552064635528,0,0,0,0,0,0,3.09315525111078,1.50764638800914,0.637938751653163,0,0,0,3.18997878469764,0.500170521059677,0.271265023699736,9.98260135347874,19.2703307900935,23.3399574250223,2.22568688486155,0,0,0,0,0.368738337083406,0.173767228936166,0.587403472388222,0,0,0,0,0,0,0,0.744323423456331,0.153461973288062,0.280660094433074,0.384417447767103,0,0,2.96836132889982,0.771048469013278,0,0.246381468041427,0,0.464841513839837,0,0,0,9.64441364582697,0.364182336013434,4.06485686374215,1.80479845162965,0.539107359730903,7.84349769176855,13.1525302187935,1.47772280450026,1.13733384070897,0,9.71621622459627,3.08454505380579,10.0250181891226,12.5422443463713,2.03901018436031,0,10.5221134719424,0,0,2.82095137628028,1.31205858279882,0.325378394664303,5.25509159403384,0,0,0,0,6.42735719376638,0.48335359146061,0.308097234229289,1.38153307253517,1.65403886981437,1.6113036730241,2.90033387828457,2.13066568540252,2.04773681987496,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0.744316738719335,1.89827654831236,6.48142659341004,0.511795582622668,0,0,0,6.83515338816596,4.11805544604082,6.36186972666707,0,0,0,59.9789499080196,0,0,2.04749867111979,4.10075752665767,0,0,0,0,0,0,0.405820753925408,0.92947049429925,0,0.143411352204052,0.589494246078727,0,0,18.3663642708968,13.1717957183961,0,0,0,0,0,3.85989583184795,0,0,0,0,0,0,0,0,0,0,0,0,0.854592569019785,0,0,0,0.577076851905779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.9881134453921,0,0,0,0,0,0,2.98244294329889,2.2507106625682,0,0,0,2.59022384726391,7.73594963487214,0,4.49982203009481,0,7.77598969154519,0,0,0,6.60910817767455,0,21.116028127481,1.93866549219044,2.31920245404628,1.99613798001194,42.7101528179783,0,10.8749936315219,0,0,0,0,0,0.347249989866585,7.97167247232455,6.75340056302285,0,0.221158519862449,0.295547618953547,0.87754158861589,0,0,9.23403102045565,0,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,10.9478812418636,5.04208117669033,14.664723478407,4.44781693020933,6.42532482521815,6.68300476834914,1.07841812769083,8.02577647298789,3.04543779442941,0,0,0,4.3404284313433,4.83962864194656,0.91821828489147,2.02197054811161,0,0,0,0,0,0,0,0,0,0,0,8.56160674385948,0,0,0,0,4.46149475846729,0,4.06765333404958,0,0,1.32952671507345,0,0,5.12287187374446,0,0,0,0,0,0,0,1.08723364858891,1.882851233622,2.95794831145333,0,1.80126086612937,1.09524303113594,0,1.71906176567983,0,5.58564802544508,1.3749625440701,1.43574604915363,0.798716001995964,1.71690419254628,2.67805748930247,2.5529719544956,0.360299883542404,0,0,0,0,0.393709926058995,0,0.795229689809303,2.31545790389679,0,0,0,0,0,2.12623448303086,0,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| |||
|short_description=p1@GFRA1 | |||
}} |
Latest revision as of 13:47, 16 September 2015
Short description: | p1@GFRA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GFRA1_5end |
Coexpression cluster: | C1565_MCF7_normal_mesothelioma_Smooth_breast_thyroid_bone |
Association with transcript: | 35bp_to_ENST00000369236_5end |
EntrezGene: | GFRA1 |
HGNC: | 4243 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 6.44e-07 | 17 |
kidney epithelial cell | 6.44e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.53e-22 | 114 |
neural plate | 7.45e-14 | 82 |
presumptive neural plate | 7.45e-14 | 82 |
neurectoderm | 2.00e-12 | 86 |
pre-chordal neural plate | 1.83e-11 | 61 |
neural tube | 8.11e-11 | 56 |
neural rod | 8.11e-11 | 56 |
future spinal cord | 8.11e-11 | 56 |
neural keel | 8.11e-11 | 56 |
ecto-epithelium | 3.10e-10 | 104 |
brain | 5.02e-10 | 68 |
future brain | 5.02e-10 | 68 |
central nervous system | 9.87e-10 | 81 |
regional part of nervous system | 1.12e-09 | 53 |
regional part of brain | 1.12e-09 | 53 |
brain grey matter | 2.00e-09 | 34 |
gray matter | 2.00e-09 | 34 |
regional part of forebrain | 2.31e-09 | 41 |
forebrain | 2.31e-09 | 41 |
anterior neural tube | 2.31e-09 | 41 |
future forebrain | 2.31e-09 | 41 |
telencephalon | 2.35e-09 | 34 |
organ system subdivision | 5.42e-09 | 223 |
regional part of telencephalon | 6.08e-09 | 32 |
cerebral hemisphere | 6.30e-09 | 32 |
structure with developmental contribution from neural crest | 8.16e-09 | 132 |
nervous system | 1.05e-08 | 89 |
ectoderm-derived structure | 2.82e-08 | 171 |
ectoderm | 2.82e-08 | 171 |
presumptive ectoderm | 2.82e-08 | 171 |
epithelium | 9.74e-08 | 306 |
cell layer | 2.17e-07 | 309 |
cavitated compound organ | 3.77e-07 | 31 |