FFCP PHASE1:Hg19::chr8:100025351..100025365,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:100025351..100025365,+
|short_description=p5@VPS13B
|description=CAGE_peak_5_at_VPS13B_5end
|association_with_transcript=-128bp_to_ENST00000355155,ENST0000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=157680 | |EntrezGene=157680 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2183 | |HGNC=2183 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z7G8 | |UniProt=Q7Z7G8 | ||
|association_with_transcript=-128bp_to_ENST00000355155,ENST00000357162,ENST00000358544,ENST00000395996,ENST00000496144,NM_015243,NM_017890,NM_152564,NM_181661,uc003yis.2,uc003yit.2,uc003yiu.1,uc003yiv.2,uc003yiw.2_5end | |||
|cluster_id=chr8:100025351..100025365,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_5_at_VPS13B_5end | |||
|id=chr8:100025351..100025365,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.03e-21!172;CL:0000566!1.03e-21!172;CL:0002032!1.26e-21!165;CL:0000837!1.26e-21!165;CL:0000988!7.85e-20!182;CL:0000763!3.50e-19!112;CL:0000049!3.50e-19!112;CL:0000738!5.38e-19!140;CL:0002031!3.80e-18!124;CL:0000766!1.29e-17!76;CL:0002057!3.45e-17!42;CL:0000557!6.34e-17!71;CL:0002087!1.07e-16!119;CL:0000839!3.41e-16!70;CL:0002009!4.21e-16!65;CL:0000860!1.37e-15!45;CL:0002194!3.21e-15!63;CL:0000576!3.21e-15!63;CL:0000040!3.21e-15!63;CL:0000559!3.21e-15!63;CL:0000134!3.93e-09!358;CL:0002320!4.42e-09!365;CL:0000219!1.27e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000775;1.35e-12;3!CL:0000094;7.28e-12;8!CL:0000860;1.21e-09;33!CL:0002057;1.21e-09;33!CL:0000081;1.62e-08;11!CL:0000771;2.42e-08;2!CL:0000576;3.26e-08;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.34e-14,72;CL:0000763,1.02e-12,108;CL:0000049,1.02e-12,108;CL:0000775,1.37e-12,3;CL:0000094,7.31e-12,8;CL:0000860,4.05e-11,42;CL:0002057,4.05e-11,42;CL:0002194,1.22e-09,59;CL:0000576,1.22e-09,59;CL:0000040,1.22e-09,59;CL:0000559,1.22e-09,59;CL:0000557,1.85e-09,67;CL:0000473,2.24e-09,48;CL:0000234,2.24e-09,48;CL:0002009,3.20e-09,61;CL:0000037,1.46e-08,168;CL:0000081,1.62e-08,11;CL:0000771,2.40e-08,2;CL:0002032,2.51e-08,161;CL:0000837,2.51e-08,161;CL:0000839,2.75e-08,66;CL:0000738,4.92e-08,136;CL:0000988,8.08e-08,177 | |||
|ontology_enrichment_development_v019=CL:0002057;7.78e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.69e-18!102;UBERON:0003061!1.69e-18!102;UBERON:0002193!1.15e-15!112;UBERON:0001474!1.31e-15!86;UBERON:0002371!3.93e-15!80;UBERON:0004765!4.04e-14!101;UBERON:0001434!4.04e-14!101;UBERON:0002405!2.98e-09!115;UBERON:0002384!3.58e-09!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,2.20e-09,82;UBERON:0002390,2.84e-09,98;UBERON:0003061,2.84e-09,98;UBERON:0004765,3.35e-08,90;UBERON:0002193,5.24e-08,108;UBERON:0001434,5.25e-08,100;UBERON:0002371,6.14e-08,76 | |||
|phase1_expression=0.363356758541113,0,0.140954404095971,0,0.893922188854576,0,0,0,0,0.245733936501509,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.328402357799783,0.629686250509434,0,0,0.619264493264304,0,0,0,0.619737604642413,0.710846162437108,0.293600439334847,1.10799081706375,0.802177789880567,0.434021741431704,0.671746422719773,0.32389366601898,0.515151135268373,0.872389432677388,0.755751887377619,0.970336244751265,0.232429036905685,1.23350366406548,0.929119112685311,0.863077176966451,1.5369642391746,2.12834006899727,0,1.29096936716765,1.35426486594342,0.564727018627814,0.818718450173537,1.34834090667051,0.918251677112708,0.641858054152187,0.639337125799041,0.329851300186716,0.997318288108159,0.852449501065388,0.580418477257168,0,1.24564449799115,0.502497330513487,1.5644487552606,0.434377689410233,1.21079900526674,2.57794345191295,1.89877432464531,0.422510572623884,0.425208599930087,1.25795187305026,0.22465726229299,0.750884464207532,0.48217676009124,0.570025487482497,0.19891667719909,0.547992461293902,0,0,0,0.853460445133014,0,0,1.32208974556972,0,0.569212969109448,0,0.764546456250458,0,1.68152568894461,0.263384084775077,0.196709770113833,0.393010762749165,0.411202997999018,0.334372990781356,0,0,0,0,0.294605907474837,0,0.270803863765016,0,0.260118695119756,0.164437904603676,0,0.289803085735052,0.14828656316206,0,0,0.339928028092699,0,0,0.253019692019503,0,1.30216690771284,0,0.451725357233318,0.383959833463255,0,0.236777252044017,0.821127996921047,0,0.267440195783507,0.144824403882799,2.43806866313962,1.34140171940727,0,0,0.50133791063589,0.144846518960824,0,0,0,0,0.175669571386252,0.589405839739707,0,0,0.324547393654683,0.522389211897802,0.132957960518865,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0.66944122552934,0,0,0,0,0,0.267899184852239,0,0.112611480483322,0,0,0.183201743930407,1.31780417436063,3.87780264148325,0,0,0,0.397227542439656,1.72101972449288,0.354668382198357,0,0,0,0,0,0.163461903113459,0.151357427644931,0.576175924479999,0.234321431833797,0,0,0,0,0,0,0.204154171254893,0,0.103325781175765,0,0,0,0,0,0.125118519871964,0,0,0.30648779579902,0.300476117813194,0,0.538168907066586,0.213557388818567,0.423863802319124,0.300091096084402,0.103052529238439,0.257640540045629,0.18611685633159,0.168776332241266,0.194874010322397,1.26216887122057,0.828449087780694,3.23292113637624,0.710019185033229,0,0.169560592310488,0,0.272746120590835,0,0,0,0,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0.4115740113314,0,0,0,0,1.32438929824395,0.368965315629341,0,0.219500570817251,0,0.100528972411631,0.0925884451585296,0,0,0,0,0.234817388471643,0,0,0,0.790204397959275,0,0,0.468008530278475,0.148631162288728,0,0.335964256397719,0.283550194484773,0,0,0,0.985326475791887,0.088048434013226,0.414656231081544,0.144119953416961,0.12624243342638,0,0,0,0,0.102827492703324,0.600686115687835,0,0.112131084345361,0.43596006883328,0.07333828582095,0.387815147273333,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0.289562613335158,0,0.179060963239896,0.448340575974109,0.788123040807709,0.215627574859517,0.385029108839245,0.508189248444927,0,0,0,0,5.99205619157746,5.9832291840805,11.189218862773,0.24538298343828,0,0.542530047399471,0.415941723061614,0.713715955188647,0.788512075169673,0.819989904948992,0.601892199455438,0,0,0.664225598535437,0,0.60818530127658,0.195801157462741,0,0.206768026122887,0.215714200818617,0.320182673410333,0,0,0,0.744323423456331,0.61384789315225,0,0.768834895534206,0.511707249066704,0,0,0.154209693802656,0,0.164254312027618,0,0.232420756919918,0.604297247958111,0,0,0.114814448164607,0.182091168006717,0.131124414959424,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0.657779629937804,0.522870902049801,0,0,0,0.103041011647722,0.0915694648183434,0.495056999523528,0,0,0,0.193341436584244,0.154048617114644,0,0.137836572484531,0.322260734604821,0,0.0852266274161009,0.267096106940212,0,0,1.78657797492418,0,0.464845549297286,0,0,0,0,0,0.18532421910392,0.143124886741991,0,0,0,0,0,0,0,0.539617372749944,0.823611089208164,0.471249609382746,0,0,0,0,0.243713489631284,0,0,0.282810863907425,0,0,0,0,0,0.655894752046633,0,0.30982349809975,0,0.143411352204052,0.196498082026242,0,0.354761064070598,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,1.01489521846434,0,1.70894156152249,0.476463550915578,1.64544909234478,0.648473311192717,0.540031437238115,1.58625035258854,0.213648142254946,0,0.245040215981032,0.371606350251437,0.28853842595289,0.640276590135727,0.318852545457645,0.199579371432817,1.1490322207942,0.846694330895531,0.649243880549111,0.280797178113459,1.14117339516596,0.156679895773023,0,1.35433422241283,0.642352300414798,0.403599414382095,0.851692475380653,0.343505344755765,0.307240764308458,2.23676107892416,1.50164227540718,0.19538809540204,0,0,0.270455678475983,0,0,0,0.293016358543788,0.242721043499027,0.222886768554957,0,0,0,0,0,0.281338832821026,0.890469640183247,0.329607748453519,0,0.398495976502139,0.552567831062295,0.503865495708552,0.10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| ||
|short_description=p5@VPS13B | |||
}} | }} |
Latest revision as of 18:42, 24 September 2015
Short description: | p5@VPS13B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_VPS13B_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -128bp_to_ENST00000355155, ENST00000357162, ENST00000358544, ENST00000395996, ENST00000496144, NM_015243, NM_017890, NM_152564, NM_181661, uc003yis.2, uc003yit.2, uc003yiu.1, uc003yiv.2, uc003yiw.2_5end |
EntrezGene: | VPS13B |
HGNC: | 2183 |
UniProt: | Q7Z7G8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.34e-14 | 72 |
myeloid cell | 1.02e-12 | 108 |
common myeloid progenitor | 1.02e-12 | 108 |
neutrophil | 1.37e-12 | 3 |
granulocyte | 7.31e-12 | 8 |
classical monocyte | 4.05e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.05e-11 | 42 |
monopoietic cell | 1.22e-09 | 59 |
monocyte | 1.22e-09 | 59 |
monoblast | 1.22e-09 | 59 |
promonocyte | 1.22e-09 | 59 |
granulocyte monocyte progenitor cell | 1.85e-09 | 67 |
defensive cell | 2.24e-09 | 48 |
phagocyte | 2.24e-09 | 48 |
macrophage dendritic cell progenitor | 3.20e-09 | 61 |
hematopoietic stem cell | 1.46e-08 | 168 |
blood cell | 1.62e-08 | 11 |
eosinophil | 2.40e-08 | 2 |
hematopoietic oligopotent progenitor cell | 2.51e-08 | 161 |
hematopoietic multipotent progenitor cell | 2.51e-08 | 161 |
myeloid lineage restricted progenitor cell | 2.75e-08 | 66 |
leukocyte | 4.92e-08 | 136 |
hematopoietic cell | 8.08e-08 | 177 |
Ontology term | p-value | n |
---|---|---|
bone element | 2.20e-09 | 82 |
hematopoietic system | 2.84e-09 | 98 |
blood island | 2.84e-09 | 98 |
skeletal element | 3.35e-08 | 90 |
hemolymphoid system | 5.24e-08 | 108 |
skeletal system | 5.25e-08 | 100 |
bone marrow | 6.14e-08 | 76 |