FFCP PHASE1:Hg19::chr7:23309611..23309632,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr7:23309611..23309632,+
|short_description=p6@GPNMB
|description=CAGE_peak_6_at_GPNMB_5end
|association_with_transcript=-29bp_to_ENST00000470994_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10457 | |EntrezGene=10457 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4462 | |HGNC=4462 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-29bp_to_ENST00000470994_5end | |||
|cluster_id=chr7:23309611..23309632,+ | |||
|coexpression_cluster_id=C71 | |||
|description=CAGE_peak_6_at_GPNMB_5end | |||
|id=chr7:23309611..23309632,+ | |||
|ontology_enrichment_celltype=CL:0000147!2.09e-08!14;CL:0000148!8.36e-08!10;CL:0000541!8.36e-08!10 | |||
|ontology_enrichment_celltype_v019=CL:0000235;1.31e-46;6!CL:0002619;1.56e-34;3!CL:0002623;9.99e-34;3!CL:0000622;1.58e-20;5!CL:0000150;7.57e-20;9!CL:0000154;3.22e-17;6!CL:0002567;1.77e-15;3!CL:0000148;2.17e-10;10!CL:0000147;1.43e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000235,1.14e-46,6;CL:0002619,1.56e-34,3;CL:0002623,1.06e-33,3;CL:0000622,1.63e-20,5;CL:0000150,8.56e-20,9;CL:0000154,3.31e-17,6;CL:0002567,1.53e-15,3;CL:0002194,3.81e-11,59;CL:0000576,3.81e-11,59;CL:0000040,3.81e-11,59;CL:0000559,3.81e-11,59;CL:0002009,9.33e-11,61;CL:0000148,2.17e-10,10;CL:0000541,2.17e-10,10;CL:0000839,6.94e-10,66;CL:0000557,1.00e-09,67;CL:0000766,5.37e-09,72;CL:0000147,1.43e-07,14 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3151;3.08e-12;1!DOID:3149;3.08e-12;1!DOID:3451;9.53e-07;2!DOID:4159;9.53e-07;2!DOID:0060122;9.53e-07;2!DOID:1909;9.53e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,4.81e-12,1;DOID:3149,4.81e-12,1;DOID:1909,8.52e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0000161!4.84e-08!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0001044;3.22e-17;6!UBERON:0003293;3.22e-17;6!UBERON:0003294;3.22e-17;6!UBERON:0010047;3.22e-17;6!UBERON:0003408;3.22e-17;6!UBERON:0000167;3.22e-17;6!UBERON:0001041;1.07e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001044,3.31e-17,6;UBERON:0003293,3.31e-17,6;UBERON:0003294,3.31e-17,6;UBERON:0010047,3.31e-17,6;UBERON:0000167,3.31e-17,6;UBERON:0003408,1.46e-10,10;UBERON:0002371,1.76e-08,76;UBERON:0001474,8.45e-08,82;UBERON:0004765,4.96e-07,90;UBERON:0002405,8.91e-07,93 | |||
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| ||
|short_description=p6@GPNMB | |||
}} | }} |
Latest revision as of 20:27, 17 September 2015
Short description: | p6@GPNMB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_GPNMB_5end |
Coexpression cluster: | C71_Monocytederived_Macrophage_CD14_Dendritic_Osteoblast_leiomyoma_Prostate |
Association with transcript: | -29bp_to_ENST00000470994_5end |
EntrezGene: | GPNMB |
HGNC: | 4462 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 1.14e-46 | 6 |
adult endothelial progenitor cell | 1.56e-34 | 3 |
acinar cell of salivary gland | 1.06e-33 | 3 |
acinar cell | 1.63e-20 | 5 |
glandular epithelial cell | 8.56e-20 | 9 |
protein secreting cell | 3.31e-17 | 6 |
light melanocyte | 1.53e-15 | 3 |
monopoietic cell | 3.81e-11 | 59 |
monocyte | 3.81e-11 | 59 |
monoblast | 3.81e-11 | 59 |
promonocyte | 3.81e-11 | 59 |
macrophage dendritic cell progenitor | 9.33e-11 | 61 |
melanocyte | 2.17e-10 | 10 |
melanoblast | 2.17e-10 | 10 |
myeloid lineage restricted progenitor cell | 6.94e-10 | 66 |
granulocyte monocyte progenitor cell | 1.00e-09 | 67 |
myeloid leukocyte | 5.37e-09 | 72 |
pigment cell | 1.43e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
saliva-secreting gland | 3.31e-17 | 6 |
gland of oral region | 3.31e-17 | 6 |
gland of foregut | 3.31e-17 | 6 |
oral gland | 3.31e-17 | 6 |
oral cavity | 3.31e-17 | 6 |
gland of gut | 1.46e-10 | 10 |
bone marrow | 1.76e-08 | 76 |
bone element | 8.45e-08 | 82 |
skeletal element | 4.96e-07 | 90 |
immune system | 8.91e-07 | 93 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 4.81e-12 | 1 |
keratoacanthoma | 4.81e-12 | 1 |
melanoma | 8.52e-07 | 2 |