FFCP PHASE1:Hg19::chr7:17338239..17338262,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:17338239..17338262,+
|short_description=p2@AHR
|description=CAGE_peak_2_at_AHR_5end
|association_with_transcript=0bp_to_ENST00000242057_5end
|EntrezGene=1...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=196 | |EntrezGene=196 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=348 | |HGNC=348 | ||
|TSSclassifier=strong | |||
|UniProt=P35869 | |UniProt=P35869 | ||
|association_with_transcript=0bp_to_ENST00000242057_5end | |||
|cluster_id=chr7:17338239..17338262,+ | |||
|coexpression_cluster_id=C4670 | |||
|description=CAGE_peak_2_at_AHR_5end | |||
|id=chr7:17338239..17338262,+ | |||
|ontology_enrichment_celltype=CL:0000557!1.95e-22!71;CL:0002057!8.96e-22!42;CL:0000860!1.49e-19!45;CL:0000839!3.71e-19!70;CL:0002009!5.67e-19!65;CL:0000766!3.42e-18!76;CL:0002194!4.70e-18!63;CL:0000576!4.70e-18!63;CL:0000040!4.70e-18!63;CL:0000559!4.70e-18!63;CL:0002320!3.39e-08!365;CL:0000763!9.40e-08!112;CL:0000049!9.40e-08!112;CL:0000134!9.61e-08!358;CL:0002031!1.65e-07!124;CL:0000738!2.17e-07!140;CL:0000048!2.59e-07!430;CL:0000723!9.36e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.45e-19;33!CL:0002057;1.45e-19;33!CL:0000473;4.49e-17;39!CL:0000234;4.49e-17;39!CL:0000576;8.83e-13;48!CL:0000766;1.20e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,6.95e-24,67;CL:0000473,8.67e-23,48;CL:0000234,8.67e-23,48;CL:0000860,8.65e-22,42;CL:0002057,8.65e-22,42;CL:0000839,2.26e-20,66;CL:0002009,2.57e-20,61;CL:0002194,2.25e-19,59;CL:0000576,2.25e-19,59;CL:0000040,2.25e-19,59;CL:0000559,2.25e-19,59;CL:0000766,2.27e-19,72;CL:0002320,1.18e-08,361;CL:0000134,3.43e-08,354;CL:0000763,3.53e-08,108;CL:0000049,3.53e-08,108;CL:0000048,7.93e-08,427;CL:0002031,7.94e-08,120;CL:0000738,9.32e-08,136;CL:0000723,3.09e-07,433;CL:0002087,8.77e-07,115 | |||
|ontology_enrichment_development_v019=CL:0002057;2.81e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.57e-22!80;UBERON:0004765!1.30e-19!101;UBERON:0001434!1.30e-19!101;UBERON:0002405!1.67e-19!115;UBERON:0002390!3.39e-19!102;UBERON:0003061!3.39e-19!102;UBERON:0001474!4.31e-19!86;UBERON:0002193!9.25e-19!112;UBERON:0002204!8.40e-17!167;UBERON:0003081!2.64e-14!216;UBERON:0000926!4.17e-13!448;UBERON:0004120!4.17e-13!448;UBERON:0006603!4.17e-13!448;UBERON:0000062!3.23e-08!511;UBERON:0002384!5.85e-08!375;UBERON:0000467!2.14e-07!625;UBERON:0000480!3.89e-07!626 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.27e-23,76;UBERON:0002405,3.78e-22,93;UBERON:0001434,3.38e-21,100;UBERON:0001474,3.84e-20,82;UBERON:0002390,4.20e-20,98;UBERON:0003061,4.20e-20,98;UBERON:0004765,1.36e-19,90;UBERON:0002193,1.42e-19,108;UBERON:0002204,3.33e-18,167;UBERON:0003081,1.41e-15,203;UBERON:0000926,1.06e-13,315;UBERON:0004120,1.06e-13,315;UBERON:0006603,1.06e-13,315;UBERON:0002384,2.13e-08,371;UBERON:0000923,1.14e-07,560;UBERON:0010316,1.14e-07,560;UBERON:0005291,1.14e-07,560;UBERON:0006598,1.14e-07,560;UBERON:0010317,1.14e-07,560;UBERON:0002532,1.14e-07,560;UBERON:0002050,1.81e-07,564 | |||
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| ||
|short_description=p2@AHR | |||
}} | }} |
Latest revision as of 13:29, 17 September 2015
Short description: | p2@AHR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_AHR_5end |
Coexpression cluster: | C4670_CD14_Mast_Basophils_placenta_Fibroblast_transitionalcell_Chondrocyte |
Association with transcript: | 0bp_to_ENST00000242057_5end |
EntrezGene: | AHR |
HGNC: | 348 |
UniProt: | P35869 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 6.95e-24 | 67 |
defensive cell | 8.67e-23 | 48 |
phagocyte | 8.67e-23 | 48 |
classical monocyte | 8.65e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.65e-22 | 42 |
myeloid lineage restricted progenitor cell | 2.26e-20 | 66 |
macrophage dendritic cell progenitor | 2.57e-20 | 61 |
monopoietic cell | 2.25e-19 | 59 |
monocyte | 2.25e-19 | 59 |
monoblast | 2.25e-19 | 59 |
promonocyte | 2.25e-19 | 59 |
myeloid leukocyte | 2.27e-19 | 72 |
connective tissue cell | 1.18e-08 | 361 |
mesenchymal cell | 3.43e-08 | 354 |
myeloid cell | 3.53e-08 | 108 |
common myeloid progenitor | 3.53e-08 | 108 |
multi fate stem cell | 7.93e-08 | 427 |
hematopoietic lineage restricted progenitor cell | 7.94e-08 | 120 |
leukocyte | 9.32e-08 | 136 |
somatic stem cell | 3.09e-07 | 433 |
nongranular leukocyte | 8.77e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.27e-23 | 76 |
immune system | 3.78e-22 | 93 |
skeletal system | 3.38e-21 | 100 |
bone element | 3.84e-20 | 82 |
hematopoietic system | 4.20e-20 | 98 |
blood island | 4.20e-20 | 98 |
skeletal element | 1.36e-19 | 90 |
hemolymphoid system | 1.42e-19 | 108 |
musculoskeletal system | 3.33e-18 | 167 |
lateral plate mesoderm | 1.41e-15 | 203 |
mesoderm | 1.06e-13 | 315 |
mesoderm-derived structure | 1.06e-13 | 315 |
presumptive mesoderm | 1.06e-13 | 315 |
connective tissue | 2.13e-08 | 371 |
germ layer | 1.14e-07 | 560 |
germ layer / neural crest | 1.14e-07 | 560 |
embryonic tissue | 1.14e-07 | 560 |
presumptive structure | 1.14e-07 | 560 |
germ layer / neural crest derived structure | 1.14e-07 | 560 |
epiblast (generic) | 1.14e-07 | 560 |
embryonic structure | 1.81e-07 | 564 |